Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 2431.4 1215 100.0
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2077.0 1222 85.8
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2072.0 1221 83.9
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2013.0 1239 81.1
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2011.9 1222 82.1
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2008.0 1220 81.4
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2004.6 1221 80.8
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2002.3 1221 80.6
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 1998.0 1221 80.3
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 1992.2 1222 80.5
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 1991.9 1222 80.9
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 1991.1 1221 80.3
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 1989.5 1221 80.8
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 1986.1 1221 80.2
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 1981.1 1221 80.2
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 1980.7 1222 80.5
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 1973.4 1221 80.6
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 1972.6 1219 80.2
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 1971.1 1219 80.1
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 1968.7 1221 79.9
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 1965.3 1220 79.4
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 1964.1 1220 79.8
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 1962.6 1221 79.7
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1959.1 1219 79.7
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 1958.0 1227 79.3
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1957.2 1222 79.9
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1956.4 1227 79.5
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1951.4 1232 79.0
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1942.2 1237 78.2
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 1938.7 1221 78.9
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1936.4 1237 77.8
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 1936.0 1221 78.8
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 1934.5 1223 78.3
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 1933.3 1221 78.5
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 1933.3 1223 78.3
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 1931.4 1219 79.0
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 1929.8 1223 78.7
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 1928.7 1219 78.7
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 1928.3 1219 78.7
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 1927.5 1223 78.0
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 1927.5 1229 78.4
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 1926.4 1223 77.9
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 1925.6 1219 78.5
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 1923.7 1219 78.4
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 1923.3 1218 78.2
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 1923.3 1220 77.8
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 1922.1 1228 77.8
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 1920.6 1258 76.8
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 1916.4 1223 77.3
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 1914.8 1223 78.5
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 1914.0 1223 78.1
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 1912.9 1227 77.7
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 1909.4 1225 77.6
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 1907.5 1235 77.6
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 1907.1 1223 77.5
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 1906.3 1223 77.3
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 1904.8 1225 77.5
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 1904.0 1230 78.0
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 1898.6 1230 77.2
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 1895.6 1222 77.4
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 1894.8 1222 77.1
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 1890.9 1220 77.9
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 1889.0 1221 76.3
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 1884.4 1221 76.2
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 1881.7 1222 77.1
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 1870.9 1246 75.8
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1866.7 1223 76.8
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 1865.9 1226 76.7
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1849.7 1221 76.3
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 1834.3 1231 75.1
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1834.3 1179 77.4
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 1830.8 1242 75.0
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1818.5 1335 70.4
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1775.4 1234 76.4
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1747.3 1483 63.0
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1739.2 1221 72.6
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1723.4 1225 69.9
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1694.1 1223 68.6
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1545.0 917 82.8
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1505.7 946 78.4
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1474.1 882 82.0
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1462.2 1219 61.5
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1442.2 911 78.3
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1430.6 943 75.1
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1417.5 996 72.3
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1397.1 920 75.3
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1395.6 1225 57.6
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1391.3 1256 55.6
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1390.9 915 75.3
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1389.0 917 75.2
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1388.6 1224 57.8
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1379.0 1117 63.7
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1343.2 1228 55.9
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1326.2 844 77.6
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1315.8 919 71.9
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1269.2 962 67.2
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1220.3 1235 51.1
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1213.4 924 65.3
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1103.2 687 79.2
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.2e-263 914.1 824 61.3
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 6.0e-244 848.6 803 56.9
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 5.3e-232 808.9 476 84.7
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 3.7e-193 679.9 550 64.9
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 1.1e-192 678.3 426 81.5
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 1.3e-166 591.7 378 79.1
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.7e-159 567.4 390 71.8
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 4.6e-151 540.0 459 60.8
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 3.9e-150 537.0 373 69.7
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 2.6e-138 497.7 274 90.5
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 3.4e-138 497.3 581 46.0
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 5.4e-136 490.0 274 89.8
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 9.2e-136 489.2 274 89.4
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 3.0e-134 484.2 274 89.1
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 8.6e-134 482.6 280 86.1
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 8.9e-131 472.6 274 85.8
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 1.7e-129 468.4 343 70.0
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.7e-126 458.4 347 70.9
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 7.3e-125 453.0 253 89.7
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 2.9e-121 441.0 301 70.4
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 1.9e-120 438.3 274 81.8
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 1.4e-115 422.2 274 79.2
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 5.8e-114 416.8 274 79.6
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 9.9e-114 416.0 310 69.4
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 1.2e-111 409.1 243 80.2
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 1.6e-95 355.5 418 51.0
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 3.9e-86 324.3 222 77.5
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.7e-76 292.4 205 74.6
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 8.2e-76 290.0 274 56.9
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 7.5e-69 266.9 166 74.7
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.1e-67 261.5 271 53.9
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 3.7e-60 238.0 475 31.6
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 4.2e-56 224.6 134 82.8
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 4.2e-56 224.6 142 73.9
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 2.9e-49 201.8 119 78.2
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 9.8e-45 186.8 425 33.9
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 5.4e-43 181.0 127 66.1
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 9.2e-43 180.3 161 57.1
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 3.4e-37 161.8 104 73.1
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 2.2e-36 159.1 104 72.1
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 1.1e-35 156.8 114 71.1
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 1.4e-35 156.4 81 92.6
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 9.2e-35 153.7 98 80.6
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.2e-34 153.3 79 94.9
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.3e-33 149.8 128 65.6
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 7.3e-32 144.1 113 61.1
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 4.0e-30 138.3 114 64.9
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 7.5e-29 134.0 95 60.0
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 6.0e-26 124.4 82 69.5
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 5.1e-25 121.3 75 74.7
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 5.1e-25 121.3 75 73.3
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 4.3e-24 118.2 74 77.0
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 5.2e-22 111.3 73 69.9
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 1.9e-19 102.8 57 87.7
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.4e-14 86.7 54 75.9
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 8.7e-09 67.4 141 35.5
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 5.3e-06 58.2 32 78.1


User provided reference genes

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