Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07159 Selenicereus undatus HOM05D002498 ORTHO05D002553 9.0e-24 112.8 61 100.0
EL10Ac4g09793 Beta vulgaris HOM05D002498 ORTHO05D002553 7.7e-15 83.2 62 75.8
AUR62000647 Chenopodium quinoa HOM05D002498 ORTHO05D002553 2.2e-14 81.6 62 72.6
Thecc.06G119300 Theobroma cacao HOM05D002498 ORTHO05D002553 1.0e-11 72.8 62 66.1
Duzib235G0745 Durio zibethinus HOM05D002498 ORTHO05D002553 1.8e-11 72.0 61 63.9
Gohir.A06G193600 Gossypium hirsutum HOM05D002498 ORTHO05D002553 2.3e-11 71.6 62 66.1
Gohir.D06G201400 Gossypium hirsutum HOM05D002498 ORTHO05D002553 8.8e-11 69.7 61 65.6
Lalb_Chr01g0013581 Lupinus albus HOM05D002498 ORTHO05D002553 8.8e-11 69.7 61 65.6
Manes.11G020700 Manihot esculenta HOM05D002498 ORTHO05D002553 8.8e-11 69.7 62 64.5
Duzib192G0999 Durio zibethinus HOM05D002498 ORTHO05D002553 1.5e-10 68.9 62 62.9
Sc12g0010550 Simmondsia chinensis HOM05D002498 ORTHO05D002553 1.5e-10 68.9 61 62.3
Dinv30674 Davidia involucrata HOM05D002498 ORTHO05D002553 2.0e-10 68.6 62 62.9
Dinv34334 Davidia involucrata HOM05D002498 ORTHO05D002553 2.0e-10 68.6 62 62.9
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 3.3e-10 67.8 62 64.5
Gorai.010G235100 Gossypium raimondii HOM05D002498 ORTHO05D002553 3.3e-10 67.8 61 63.9
Hma1.2p1_0291F.1_g115140 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 3.3e-10 67.8 62 64.5
Cpa.g.sc25.113 Carica papaya HOM05D002498 ORTHO05D002553 4.4e-10 67.4 62 61.3
Rhsim12G0209700 Rhododendron simsii HOM05D002498 ORTHO05D002553 4.4e-10 67.4 62 64.5
vmacro22041 Vaccinium macrocarpon HOM05D002498 ORTHO05D002553 4.4e-10 67.4 62 64.5
Potri.001G169900 Populus trichocarpa HOM05D002498 ORTHO05D002553 5.7e-10 67.0 62 64.5
Potri.003G064100 Populus trichocarpa HOM05D002498 ORTHO05D002553 5.7e-10 67.0 62 66.1
Lalb_Chr04g0263441 Lupinus albus HOM05D002498 ORTHO05D002553 9.7e-10 66.2 61 62.3
Gohir.D10G055000 Gossypium hirsutum HOM05D002498 ORTHO05D002553 1.3e-09 65.9 60 61.7
Gorai.011G058700 Gossypium raimondii HOM05D002498 ORTHO05D002553 1.3e-09 65.9 60 61.7
Lj3g0023911 Lotus japonicus HOM05D002498 ORTHO05D002553 1.3e-09 65.9 61 63.9
GSVIVG01016770001 Vitis vinifera HOM05D002498 ORTHO05D002553 1.3e-09 65.9 65 64.6
COL.COLO4_30763 Corchorus olitorius HOM05D002498 ORTHO05D002553 1.7e-09 65.5 62 59.7
MD09G1184100 Malus domestica HOM05D002498 ORTHO05D002553 2.2e-09 65.1 62 62.9
arahy.Tifrunner.gnm1.ann1.U78AI9 Arachis hypogaea HOM05D002498 ORTHO05D002553 3.7e-09 64.3 60 58.3
Phvul.010G130700 Phaseolus vulgaris HOM05D002498 ORTHO05D002553 6.3e-09 63.5 65 60.0
Sabra01G0141600 Salix brachista HOM05D002498 ORTHO05D002553 6.3e-09 63.5 62 62.9
Gohir.A10G053200 Gossypium hirsutum HOM05D002498 ORTHO05D002553 8.2e-09 63.2 60 60.0
Hma1.2p1_0496F.1_g166220 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 8.2e-09 63.2 62 62.9
FvH4_6g34640 Fragaria vesca HOM05D002498 ORTHO05D002553 1.1e-08 62.8 62 64.5
FAN09G3304 Fragaria x ananassa HOM05D002498 ORTHO05D002553 1.1e-08 62.8 62 64.5
FAN14G0943 Fragaria x ananassa HOM05D002498 ORTHO05D002553 1.1e-08 62.8 62 64.5
MD17G1168400 Malus domestica HOM05D002498 ORTHO05D002553 1.4e-08 62.4 62 62.9
arahy.Tifrunner.gnm1.ann1.T5SCHP Arachis hypogaea HOM05D002498 ORTHO05D002553 1.8e-08 62.0 59 57.6
Lj9A523T55 Lonicera japonica HOM05D002498 ORTHO05D002553 1.8e-08 62.0 62 59.7
VMungo0331G0210 Vigna mungo HOM05D002498 ORTHO05D002553 1.8e-08 62.0 63 58.7
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.1e-08 61.2 62 62.9
FAN05G3736 Fragaria x ananassa HOM05D002498 ORTHO05D002553 3.1e-08 61.2 62 62.9
Glyma.07G037600 Glycine max HOM05D002498 ORTHO05D002553 3.1e-08 61.2 63 58.7
Prupe.3G042400 Prunus persica HOM05D002498 ORTHO05D002553 3.1e-08 61.2 61 63.9
Medtr8g020480 Medicago truncatula HOM05D002498 ORTHO05D002553 4.1e-08 60.8 61 59.0
QL05p007807 Quercus lobata HOM05D002498 ORTHO05D002553 4.1e-08 60.8 60 58.3
A06p13370 Brassica napus HOM05D002498 ORTHO05D002553 1.2e-07 59.3 62 56.5
BraA06t24489Z Brassica rapa HOM05D002498 ORTHO05D002553 1.2e-07 59.3 62 56.5
Thhalv10006997m.g Eutrema salsugineum HOM05D002498 ORTHO05D002553 1.2e-07 59.3 62 53.2
Sabra03G0037900 Salix brachista HOM05D002498 ORTHO05D002553 1.2e-07 59.3 59 62.7
RcHm_v2.0_Chr2g0145171 Rosa chinensis HOM05D002498 ORTHO05D002553 1.5e-07 58.9 62 61.3
CARHR018030 Cardamine hirsuta HOM05D002498 ORTHO05D002553 2.0e-07 58.5 62 53.2
Actinidia26030 Actinidia chinensis HOM05D002498 ORTHO05D002553 2.6e-07 58.2 60 56.7
CANSAT56G2749 Cannabis sativa HOM05D002498 ORTHO05D002553 2.6e-07 58.2 62 54.8
Actinidia37365 Actinidia chinensis HOM05D002498 ORTHO05D002553 3.4e-07 57.8 62 54.8
Actinidia39082 Actinidia chinensis HOM05D002498 ORTHO05D002553 3.4e-07 57.8 62 54.8
C05p15830 Brassica napus HOM05D002498 ORTHO05D002553 4.5e-07 57.4 62 54.8
BolC5t30289H Brassica oleracea HOM05D002498 ORTHO05D002553 4.5e-07 57.4 62 54.8
Peaxi162Scf00038g01936 Petunia axillaris HOM05D002498 ORTHO05D002553 5.9e-07 57.0 62 56.5
Sp1g15580 Schrenkiella parvula HOM05D002498 ORTHO05D002553 5.9e-07 57.0 62 53.2
Eucgr.F03174 Eucalyptus grandis HOM05D002498 ORTHO05D002553 1.0e-06 56.2 62 53.2
Nitab4.5_0002072g0070 Nicotiana tabacum HOM05D002498 ORTHO05D002553 1.3e-06 55.8 62 54.8
Nitab4.5_0012529g0010 Nicotiana tabacum HOM05D002498 ORTHO05D002553 1.3e-06 55.8 62 54.8
PGSC0003DMG400002568 Solanum tuberosum HOM05D002498 ORTHO05D002553 1.3e-06 55.8 62 54.8
Aqoxy1G00838 Aquilegia oxysepala HOM05D002498 ORTHO05D002553 1.7e-06 55.5 61 52.5
AL1G29720 Arabidopsis lyrata HOM05D002498 ORTHO05D002553 1.7e-06 55.5 62 50.0
AT1G17440 Arabidopsis thaliana HOM05D002498 ORTHO05D002553 1.7e-06 55.5 62 51.6
MBI14_g32128_MAGBIO Magnolia biondii HOM05D002498 ORTHO05D002553 1.7e-06 55.5 62 53.2
CSS0029074 Camellia sinensis var. sinensis HOM05D002498 ORTHO05D002553 3.8e-06 54.3 57 56.1
CSS0031655 Camellia sinensis var. sinensis HOM05D002498 ORTHO05D002553 3.8e-06 54.3 57 56.1
Ciclev10025234m.g Citrus clementina HOM05D002498 ORTHO05D002553 6.5e-06 53.5 61 47.5
CsaV3_7G034500 Cucumis sativus L. HOM05D002498 ORTHO05D002553 6.5e-06 53.5 62 53.2
TAR633G2028 Trochodendron aralioides HOM05D002498 ORTHO05D002553 6.5e-06 53.5 62 54.8
Carub.0001s1720 Capsella rubella HOM05D002498 ORTHO05D002553 8.5e-06 53.1 62 50.0
THA.LOC104813958 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 8.5e-06 53.1 63 52.4


User provided reference genes

Program Settings