Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 7.3e-201 703.7 374 100.0
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 6.6e-125 451.4 379 70.4
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.8e-122 443.4 367 70.3
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 9.8e-121 437.6 376 68.6
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 6.6e-117 424.9 380 66.6
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 4.3e-108 395.6 382 61.5
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.1e-106 389.4 400 58.0
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.2e-106 388.7 400 58.2
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 5.2e-106 388.7 400 58.2
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 6.8e-106 388.3 382 61.0
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.0e-105 386.7 382 61.0
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 2.2e-104 383.3 394 60.4
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.4e-103 379.8 379 60.4
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 2.7e-102 376.3 375 60.3
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.5e-102 375.9 370 58.9
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 3.0e-101 372.9 377 59.7
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 6.6e-101 371.7 369 60.4
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 6.2e-99 365.2 379 59.6
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.8e-98 363.6 358 61.7
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 2.4e-98 363.2 364 59.3
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.1e-98 362.8 370 57.6
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 6.8e-98 361.7 375 59.2
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.6e-97 359.8 377 58.6
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.6e-97 359.8 356 59.0
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 4.9e-96 355.5 370 60.5
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.1e-95 354.4 377 58.4
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 3.2e-95 352.8 405 54.6
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 7.1e-95 351.7 379 58.0
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 9.2e-95 351.3 367 56.4
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 1.6e-94 350.5 403 55.8
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.7e-94 349.7 360 60.3
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.0e-93 347.8 385 55.8
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 3.3e-92 342.8 384 57.3
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 4.3e-92 342.4 377 54.9
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 5.6e-92 342.0 368 57.9
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.1e-91 340.1 386 57.5
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.8e-91 339.7 283 64.3
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 6.2e-91 338.6 386 57.3
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.4e-90 337.4 370 56.8
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 1.8e-90 337.0 381 55.9
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.1e-90 336.3 370 56.2
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 3.1e-90 336.3 453 50.1
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 9.0e-90 334.7 384 56.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 9.0e-90 334.7 384 56.8
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 9.0e-90 334.7 376 55.1
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 9.9e-89 331.3 390 55.6
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.3e-88 330.9 407 53.6
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 3.8e-88 329.3 380 54.7
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 2.4e-87 326.6 361 55.7
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 3.2e-87 326.2 382 54.7
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 6.0e-86 322.0 410 51.5
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 1.3e-85 320.9 409 51.1
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 2.3e-85 320.1 380 55.5
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 6.6e-85 318.5 382 54.2
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 8.7e-85 318.2 373 55.2
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 1.5e-84 317.4 378 54.2
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.9e-84 317.0 408 50.5
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.9e-84 317.0 399 51.1
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 1.9e-84 317.0 392 55.4
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 2.5e-84 316.6 394 51.8
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.5e-84 316.6 380 53.9
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 7.3e-84 315.1 359 54.0
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.6e-83 313.9 417 50.8
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.4e-82 310.8 427 50.4
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 2.4e-82 310.1 343 54.5
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.2e-81 307.8 379 51.7
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.5e-81 307.4 360 54.2
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 5.8e-81 305.4 285 58.9
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 7.6e-81 305.1 329 55.3
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 7.6e-81 305.1 397 49.9
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 7.6e-81 305.1 402 49.8
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 7.6e-81 305.1 369 53.4
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.7e-80 303.9 352 52.8
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 1.7e-80 303.9 341 54.0
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 3.8e-80 302.8 285 58.6
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 4.9e-80 302.4 340 57.1
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 6.4e-80 302.0 410 49.5
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 8.4e-80 301.6 431 48.7
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.1e-79 301.2 285 58.2
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 3.2e-79 299.7 379 51.2
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 3.5e-78 296.2 303 55.8
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 7.9e-78 295.0 378 50.5
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 8.7e-77 291.6 438 45.9
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 5.6e-76 288.9 377 50.7
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 6.2e-75 285.4 435 46.9
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.8e-74 283.9 490 44.3
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 4.0e-74 282.7 491 42.8
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 6.9e-74 282.0 455 45.9
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 9.0e-74 281.6 458 46.3
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 7.6e-73 278.5 465 44.5
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 1.3e-72 277.7 338 52.4
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 2.9e-72 276.6 486 43.0
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 4.9e-72 275.8 466 44.8
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 6.4e-72 275.4 402 49.8
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.9e-71 273.9 459 44.7
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.9e-71 273.9 459 44.7
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 5.5e-71 272.3 451 43.9
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 2.1e-70 270.4 395 45.8
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 2.7e-70 270.0 348 50.0
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 7.9e-70 268.5 294 54.1
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 3.9e-69 266.2 475 42.3
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 2.5e-68 263.5 375 47.2
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 3.3e-68 263.1 332 52.7
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 3.7e-67 259.6 375 49.9
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 1.4e-66 257.7 472 39.2
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 2.4e-66 256.9 425 45.2
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 9.3e-63 245.0 343 48.4
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.6e-62 242.7 335 46.6
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 4.6e-62 242.7 414 45.7
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 3.9e-61 239.6 459 41.4
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.1e-58 231.5 354 45.8
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.8e-58 230.7 422 42.7
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 2.4e-58 230.3 334 46.4
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.2e-57 228.0 393 40.7
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 5.9e-57 225.7 409 42.1
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 1.3e-51 208.0 279 49.8
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 2.2e-51 207.2 264 51.9
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 3.7e-51 206.5 391 43.7
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.2e-49 201.4 261 52.5
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.2e-49 201.4 431 35.7
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 4.5e-49 199.5 336 42.9
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 1.5e-44 184.5 316 40.8
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 3.3e-44 183.3 361 43.8
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 3.1e-42 176.8 343 40.5
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 7.2e-39 165.6 128 70.3
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.1e-36 158.3 315 39.4
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 4.5e-33 146.4 332 40.1
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 9.4e-31 138.7 382 36.1
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 2.3e-29 134.0 329 36.8
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 2.4e-26 124.0 76 77.6
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.5e-23 114.8 158 47.5
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 1.2e-22 111.7 76 76.3
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 1.6e-22 111.3 241 37.3
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 6.1e-22 109.4 329 33.1
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 3.4e-20 103.6 404 27.7
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.4e-18 97.4 71 63.4
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 7.7e-17 92.4 65 61.5
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 7.7e-17 92.4 66 63.6
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.3e-16 91.7 66 62.1
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 6.6e-16 89.4 63 66.7
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 4.2e-15 86.7 172 41.9
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 5.5e-15 86.3 107 49.5
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 6.1e-14 82.8 83 59.0
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-13 82.0 56 66.1
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 4.1e-10 70.1 123 37.4
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 9.2e-10 68.9 162 36.4
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.8e-06 57.4 37 81.1


User provided reference genes

Program Settings