Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 1.2e-184 649.8 309 100.0
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 7.9e-144 514.2 300 81.0
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 9.6e-142 507.3 302 79.8
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 4.8e-141 505.0 294 82.0
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.0e-139 499.6 294 81.0
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 6.5e-138 494.6 309 76.4
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 8.4e-138 494.2 309 76.7
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.1e-137 493.8 308 76.6
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.1e-137 493.8 298 80.2
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.4e-137 493.4 290 80.3
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.5e-137 492.7 309 76.7
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 2.5e-137 492.7 280 82.5
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 5.5e-137 491.5 293 80.5
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 5.5e-137 491.5 296 79.7
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 7.1e-137 491.1 302 78.5
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 7.1e-137 491.1 297 79.5
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 9.3e-137 490.7 307 77.2
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.1e-136 489.6 313 75.1
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 2.1e-136 489.6 305 77.4
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 2.7e-136 489.2 300 79.0
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 2.7e-136 489.2 303 77.6
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 4.6e-136 488.4 307 76.9
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 6.0e-136 488.0 309 74.8
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 7.9e-136 487.6 288 79.9
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 7.9e-136 487.6 304 76.6
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 7.9e-136 487.6 304 76.6
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 1.3e-135 486.9 289 79.2
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 1.8e-135 486.5 293 78.8
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 3.9e-135 485.3 280 80.7
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 3.9e-135 485.3 298 77.2
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 3.9e-135 485.3 287 78.4
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.1e-135 485.0 304 76.3
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 5.1e-135 485.0 300 77.7
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 5.1e-135 485.0 301 77.4
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 6.7e-135 484.6 285 80.4
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.1e-134 483.8 304 77.3
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 1.1e-134 483.8 309 74.8
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.9e-134 483.0 302 77.5
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.5e-134 482.6 294 78.2
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.5e-134 482.6 308 75.3
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.3e-134 482.3 308 75.6
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.3e-134 481.9 302 77.5
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 7.4e-134 481.1 309 74.1
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 9.6e-134 480.7 301 77.1
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 9.6e-134 480.7 280 80.4
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 9.6e-134 480.7 278 80.6
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 9.6e-134 480.7 280 80.7
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 1.6e-133 479.9 309 72.8
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 1.6e-133 479.9 285 80.4
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 2.1e-133 479.6 278 80.6
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 2.8e-133 479.2 287 79.4
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.8e-133 479.2 302 75.5
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 6.3e-133 478.0 288 78.5
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 8.2e-133 477.6 279 80.3
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.4e-132 476.9 303 75.2
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 1.4e-132 476.9 280 80.0
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.8e-132 476.5 300 77.3
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 1.8e-132 476.5 278 79.9
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 5.3e-132 474.9 293 76.1
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 1.5e-131 473.4 298 75.2
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 3.4e-131 472.2 301 74.8
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 3.4e-131 472.2 298 74.8
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 3.4e-131 472.2 309 73.1
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 3.4e-131 472.2 287 78.0
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 4.5e-131 471.9 287 78.4
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 7.6e-131 471.1 287 77.0
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 7.6e-131 471.1 285 79.3
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 1.0e-130 470.7 298 74.8
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.0e-130 470.7 287 77.0
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 1.0e-130 470.7 287 78.4
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 1.0e-130 470.7 278 79.1
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 2.9e-130 469.2 298 74.2
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 2.9e-130 469.2 307 73.9
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 5.0e-130 468.4 287 77.0
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 5.0e-130 468.4 285 78.2
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 6.5e-130 468.0 282 77.7
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 6.5e-130 468.0 285 77.5
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.1e-129 467.2 309 72.2
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.9e-129 466.5 309 72.2
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 2.5e-129 466.1 301 73.8
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 2.5e-129 466.1 307 72.6
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 2.5e-129 466.1 280 78.6
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 2.5e-129 466.1 293 75.8
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 3.2e-129 465.7 309 71.8
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 3.2e-129 465.7 285 77.9
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 3.2e-129 465.7 287 76.3
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 4.2e-129 465.3 288 75.7
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 7.2e-129 464.5 289 76.5
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.2e-128 463.8 309 71.8
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.2e-128 463.8 308 71.8
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.2e-128 463.8 292 75.0
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 2.1e-128 463.0 309 71.8
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 2.7e-128 462.6 288 75.3
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 2.7e-128 462.6 288 75.3
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 2.7e-128 462.6 284 75.7
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 5.1e-127 458.4 295 75.6
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.1e-126 457.2 288 75.0
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 2.5e-126 456.1 296 72.6
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 3.3e-126 455.7 289 75.4
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 4.3e-126 455.3 287 76.3
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 5.7e-126 454.9 288 74.7
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 5.7e-126 454.9 288 74.7
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 7.4e-126 454.5 311 71.4
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 1.3e-125 453.8 287 74.9
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 1.3e-125 453.8 287 74.9
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.6e-125 453.4 310 70.6
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 8.2e-125 451.1 288 74.0
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 9.1e-124 447.6 286 73.8
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.5e-123 446.8 296 73.3
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 2.6e-123 446.0 280 76.8
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.3e-122 443.7 255 83.1
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 5.0e-122 441.8 264 78.4
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.5e-121 439.5 293 71.7
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 3.2e-121 439.1 291 73.5
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 3.2e-121 439.1 291 73.5
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 7.4e-118 427.9 285 73.0
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 2.2e-117 426.4 235 84.7
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 2.8e-117 426.0 218 90.8
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 3.1e-116 422.5 218 89.0
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 9.1e-116 421.0 222 85.1
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 1.2e-115 420.6 223 85.7
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 2.6e-115 419.5 216 86.6
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 7.7e-115 417.9 218 88.1
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.7e-114 416.8 213 89.7
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.4e-113 413.7 288 66.3
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 4.2e-113 412.1 286 69.2
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 7.2e-113 411.4 284 70.1
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 1.8e-108 396.7 208 87.5
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 1.9e-105 386.7 290 66.9
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.5e-105 386.3 288 65.3
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 3.6e-104 382.5 289 66.1
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 3.1e-100 369.4 219 75.8
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 7.2e-97 358.2 234 73.5
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 2.0e-94 350.1 288 59.0
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.0e-90 337.8 294 58.5
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.4e-79 300.8 159 86.2
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 4.0e-79 299.3 291 52.2
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.7e-77 293.9 206 68.4
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.4e-76 290.8 151 88.1
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 7.8e-75 285.0 216 67.1
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 3.4e-70 269.6 200 66.5
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 9.8e-70 268.1 186 70.4
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 7.8e-67 258.5 189 69.3
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 4.7e-64 249.2 186 66.1
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 4.9e-61 239.2 167 70.1
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.9e-57 227.3 128 80.5
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.4e-52 210.3 150 67.3
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 2.5e-41 173.7 161 58.4
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 2.2e-16 90.9 49 79.6
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 3.1e-15 87.0 106 44.3
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 1.0e-13 82.0 45 82.2
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 1.4e-12 78.2 51 70.6
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 6.1e-11 72.8 46 71.7


User provided reference genes

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