Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 1.0e-157 560.1 291 100.0
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 1.5e-87 327.0 221 79.2
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 4.2e-87 325.5 221 76.0
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 4.7e-86 322.0 221 77.8
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 2.7e-78 296.2 193 76.2
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 6.1e-78 295.0 188 80.9
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 6.1e-78 295.0 214 73.4
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 1.8e-77 293.5 252 63.1
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 2.3e-77 293.1 218 70.6
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 3.0e-77 292.7 225 69.8
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 2.6e-76 289.7 189 79.4
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 2.6e-76 289.7 204 76.5
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 5.7e-76 288.5 187 78.1
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 7.5e-76 288.1 188 79.3
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 9.8e-76 287.7 218 70.2
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 1.4e-74 283.9 193 73.6
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 2.4e-74 283.1 209 69.9
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 3.1e-74 282.7 239 65.3
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 5.4e-74 282.0 188 75.0
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 7.0e-74 281.6 221 67.9
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 1.2e-73 280.8 211 70.1
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.6e-73 280.4 194 75.3
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 2.0e-73 280.0 221 64.3
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 2.7e-73 279.6 217 67.7
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 2.7e-73 279.6 194 75.3
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 3.5e-73 279.3 207 70.5
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 4.5e-73 278.9 207 71.0
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 5.9e-73 278.5 216 67.1
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 1.0e-72 277.7 199 71.9
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 2.3e-72 276.6 221 66.5
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 2.9e-72 276.2 187 74.3
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 2.9e-72 276.2 212 66.5
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 5.0e-72 275.4 186 73.7
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 5.0e-72 275.4 186 74.2
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 6.6e-72 275.0 186 73.7
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 8.6e-72 274.6 189 74.1
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 8.6e-72 274.6 219 65.8
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 8.6e-72 274.6 215 66.0
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 1.1e-71 274.2 189 73.0
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 1.5e-71 273.9 189 75.1
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 1.9e-71 273.5 196 73.5
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 2.5e-71 273.1 212 67.0
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 2.5e-71 273.1 219 65.3
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.5e-71 273.1 225 65.3
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 3.3e-71 272.7 210 68.6
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 4.2e-71 272.3 216 67.1
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 5.5e-71 271.9 189 72.5
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 9.5e-71 271.2 197 71.1
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 9.5e-71 271.2 210 68.6
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.6e-70 270.4 224 65.2
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 2.1e-70 270.0 210 68.6
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.1e-70 270.0 201 68.7
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 2.8e-70 269.6 222 64.0
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 2.8e-70 269.6 193 72.0
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 2.8e-70 269.6 218 64.2
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 3.6e-70 269.2 194 71.6
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 4.7e-70 268.9 190 70.0
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 6.1e-70 268.5 199 68.8
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 6.1e-70 268.5 172 79.1
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 8.0e-70 268.1 207 69.1
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 8.0e-70 268.1 193 72.0
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 1.8e-69 266.9 197 70.1
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 1.8e-69 266.9 187 70.6
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 8.9e-69 264.6 193 72.0
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 1.2e-68 264.2 206 65.0
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 1.2e-68 264.2 196 68.4
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 2.0e-68 263.5 197 69.0
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 2.0e-68 263.5 187 71.1
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 2.0e-68 263.5 221 62.9
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 3.4e-68 262.7 188 68.6
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 4.4e-68 262.3 171 77.2
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 5.7e-68 261.9 215 63.7
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 5.7e-68 261.9 219 63.5
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 1.7e-67 260.4 174 74.1
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 1.7e-67 260.4 190 69.5
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 2.8e-67 259.6 190 69.5
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 4.9e-67 258.8 188 69.1
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 4.9e-67 258.8 172 74.4
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 1.1e-66 257.7 204 65.7
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 1.4e-66 257.3 189 69.3
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 1.4e-66 257.3 172 75.6
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 5.4e-66 255.4 221 61.5
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 5.4e-66 255.4 187 67.4
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 7.0e-66 255.0 199 65.3
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.0e-64 251.1 204 64.2
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 8.6e-64 248.1 222 60.8
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.1e-63 247.7 190 67.9
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.5e-63 247.3 192 66.7
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 7.3e-63 245.0 206 63.1
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 9.5e-63 244.6 189 64.6
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 2.1e-62 243.4 282 51.8
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.2e-60 237.7 139 83.5
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 7.5e-60 235.0 188 64.9
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 1.7e-59 233.8 276 51.1
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 2.9e-59 233.0 195 61.5
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 2.7e-57 226.5 186 62.9
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 5.0e-56 222.2 137 78.1
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 5.2e-53 212.2 202 55.9
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 4.4e-52 209.1 186 58.6
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 5.8e-52 208.8 190 57.4
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 3.2e-50 203.0 152 67.1
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 2.7e-49 199.9 150 64.7
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 4.6e-49 199.1 156 63.5
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.5e-47 194.1 184 56.5
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 2.5e-39 166.8 166 55.4
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 1.6e-38 164.1 166 53.6
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 8.1e-38 161.8 92 84.8
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 2.4e-37 160.2 166 53.0
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 7.8e-33 145.2 180 45.0
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 6.6e-32 142.1 92 75.0
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.1e-26 124.8 77 77.9
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.1e-26 124.8 77 77.9
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.9e-26 124.0 134 53.7
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 2.1e-25 120.6 73 78.1
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.1e-25 120.6 77 75.3
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 3.1e-21 106.7 116 52.6
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 1.9e-18 97.4 57 78.9
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 5.4e-18 95.9 57 77.2
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 2.7e-17 93.6 219 35.2
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.5e-15 87.0 53 81.1
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 2.5e-15 87.0 77 55.8
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 9.3e-10 68.6 39 82.1
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 1.2e-09 68.2 37 78.4
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 3.5e-09 66.6 119 42.9
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 7.9e-09 65.5 39 76.9
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.0e-08 65.1 38 81.6
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 3.9e-08 63.2 35 85.7
Mapoly0122s0043 Marchantia polymorpha HOM05D029718 ORTHO05D026695 2.1e-06 57.4 95 37.9


User provided reference genes

Program Settings