Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06829 Selenicereus undatus HOM05D007286 ORTHO05D008955 1.3e-299 1032.3 548 100.0
AUR62041274 Chenopodium quinoa HOM05D007286 ORTHO05D008955 4.1e-107 392.9 597 48.4
EL10Ac4g08793 Beta vulgaris HOM05D007286 ORTHO05D008955 4.2e-104 382.9 571 47.8
AUR62034104 Chenopodium quinoa HOM05D007286 ORTHO05D008955 2.1e-103 380.6 592 48.6
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 3.1e-83 313.5 595 41.5
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 7.2e-80 302.4 532 44.7
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 1.5e-72 278.1 602 39.0
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 7.2e-72 275.8 605 37.2
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 4.7e-71 273.1 611 39.0
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 6.1e-71 272.7 606 37.1
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 3.8e-65 253.4 615 36.1
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 8.0e-63 245.7 554 40.1
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 3.4e-61 240.4 630 34.4
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 9.8e-61 238.8 584 37.3
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 6.4e-60 236.1 603 36.8
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.8e-59 234.6 584 36.8
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 1.8e-59 234.6 584 36.8
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 4.6e-58 229.9 609 36.1
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 5.0e-57 226.5 601 37.1
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 9.5e-56 222.2 592 37.7
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 1.6e-55 221.5 605 36.5
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 3.1e-54 217.2 620 35.5
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 2.6e-53 214.2 621 34.6
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 3.4e-53 213.8 594 36.7
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 7.5e-53 212.6 630 35.2
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 4.9e-52 209.9 603 35.3
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.4e-51 208.4 616 33.9
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 7.0e-51 206.1 579 34.2
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 7.0e-51 206.1 624 34.0
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 2.0e-50 204.5 584 37.0
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 2.0e-50 204.5 613 34.4
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 3.5e-50 203.8 614 32.9
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 4.6e-50 203.4 579 34.0
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 4.6e-50 203.4 616 33.6
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 7.8e-50 202.6 606 33.8
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 3.0e-49 200.7 579 34.4
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 5.0e-49 199.9 613 35.6
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 6.6e-49 199.5 596 34.6
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 6.6e-49 199.5 574 35.9
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 8.6e-49 199.1 596 35.6
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 8.6e-49 199.1 616 33.1
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 1.5e-48 198.4 594 35.7
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 7.3e-48 196.1 584 34.8
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 1.6e-47 194.9 620 34.0
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 6.2e-47 193.0 625 33.1
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 8.1e-47 192.6 576 33.2
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 1.4e-46 191.8 539 34.9
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 1.4e-46 191.8 543 34.1
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 1.8e-46 191.4 585 34.4
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 2.3e-46 191.0 607 33.4
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 8.9e-46 189.1 593 34.7
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 4.4e-45 186.8 610 32.1
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 7.5e-45 186.0 601 32.8
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 9.8e-45 185.7 534 33.1
Migut.B01162 Erythranthe guttata HOM05D007286 ORTHO05D008955 2.2e-44 184.5 529 35.0
CDE04G1177 Ceratophyllum demersum HOM05D007286 ORTHO05D008955 3.7e-44 183.7 522 36.0
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 6.4e-44 183.0 552 33.7
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 6.4e-44 183.0 572 34.3
arahy.Tifrunner.gnm1.ann1.VD1ICN Arachis hypogaea HOM05D007286 ORTHO05D008955 2.4e-43 181.0 608 32.6
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 3.2e-43 180.6 554 33.2
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 1.6e-42 178.3 580 32.1
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 1.6e-42 178.3 588 32.3
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 2.1e-42 177.9 582 32.1
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 7.8e-42 176.0 549 33.2
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 7.8e-42 176.0 581 31.8
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 1.7e-41 174.9 540 34.1
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 3.9e-41 173.7 550 34.0
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 5.1e-41 173.3 586 32.8
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 1.1e-40 172.2 374 37.2
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 1.9e-40 171.4 505 34.9
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.5e-37 161.8 611 31.3
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 2.9e-36 157.5 609 32.7
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 3.2e-35 154.1 578 31.7
SGA_v2.0_scaffold143G35713 Striga asiatica HOM05D007286 ORTHO05D008955 2.1e-34 151.4 535 33.5
HPP92_018000 Vanilla planifolia HOM05D007286 ORTHO05D008955 2.1e-34 151.4 575 31.5
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.3e-33 148.7 634 30.0
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 2.8e-31 141.0 364 33.0
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 3.6e-31 140.6 412 33.0
vmacro23447 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 1.1e-30 139.0 397 37.0
VMungo1127G2168 Vigna mungo HOM05D007286 ORTHO05D008955 1.8e-30 138.3 233 41.2
vmacro13789 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 3.1e-30 137.5 397 36.8
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 1.7e-28 131.7 466 34.3
Cc07_g21350 Coffea canephora HOM05D007286 ORTHO05D008955 6.4e-28 129.8 260 38.1
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 6.0e-26 123.2 89 71.9
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 4.0e-22 110.5 85 67.1
Cc07_g21330 Coffea canephora HOM05D007286 ORTHO05D008955 3.2e-19 100.9 301 34.2
Os11g0129800 Oryza sativa ssp. japonica HOM05D007286 ORTHO05D008955 1.6e-18 98.6 255 32.2
HPP92_026688 Vanilla planifolia HOM05D007286 ORTHO05D008955 1.3e-17 95.5 388 30.7
vmacro13790 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 3.0e-17 94.4 213 35.2
vmacro23446 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 3.0e-17 94.4 213 35.2
DCAR_025313 Daucus carota HOM05D007286 ORTHO05D008955 6.7e-17 93.2 436 31.2
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 3.3e-16 90.9 460 29.8
Zm00001eb093550 Zea mays HOM05D007286 ORTHO05D008955 6.2e-15 86.7 606 26.4
Glyma.15G221551 Glycine max HOM05D007286 ORTHO05D008955 8.1e-15 86.3 176 36.9
Cfa000528 Carpinus fangiana HOM05D007286 ORTHO05D008955 3.4e-13 80.9 300 32.7
PSO384G4662 Papaver somniferum HOM05D007286 ORTHO05D008955 7.6e-13 79.7 200 37.0
unitig_22.g5338 Utricularia gibba HOM05D007286 ORTHO05D008955 7.6e-13 79.7 226 35.8
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 2.9e-12 77.8 445 25.4
Dinv30991 Davidia involucrata HOM05D007286 ORTHO05D008955 4.9e-12 77.0 302 31.8
Dinv31112 Davidia involucrata HOM05D007286 ORTHO05D008955 4.9e-12 77.0 302 31.8
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 1.1e-11 75.9 441 29.7
Lalb_Chr08g0237001 Lupinus albus HOM05D005518 ORTHO05D001269 1.4e-11 75.5 569 26.9
FAN10G0279 Fragaria x ananassa HOM05D000139 ORTHO05D008955 2.4e-11 74.7 375 30.7
Aqoxy386s002 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 4.2e-11 73.9 197 34.0
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 4.2e-11 73.9 498 28.5
HPP92_026687 Vanilla planifolia HOM05D007286 ORTHO05D008955 7.1e-11 73.2 184 34.8
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 9.3e-11 72.8 593 27.5
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 9.3e-11 72.8 623 26.8
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.2e-10 72.4 453 31.1
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.2e-10 72.4 444 31.1
Glyma.15G221400 Glycine max HOM05D007286 ORTHO05D008955 2.1e-10 71.6 371 29.9
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 2.1e-10 71.6 90 44.4
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 2.7e-10 71.2 452 30.3
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 2.7e-10 71.2 609 27.3
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 6.0e-10 70.1 414 29.5
FAN01G1792 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.3e-09 68.9 315 30.2
Lalb_Chr11g0069691 Lupinus albus HOM05D005518 ORTHO05D001269 2.3e-09 68.2 582 25.9
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 3.0e-09 67.8 529 27.4
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 3.0e-09 67.8 429 29.8
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 3.9e-09 67.4 437 29.3
VMungo1127G0495 Vigna mungo HOM05D007286 ORTHO05D008955 6.7e-09 66.6 301 29.2
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 1.1e-08 65.9 589 27.3
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.1e-08 65.9 529 27.2
Aqoxy386s001 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 1.5e-08 65.5 286 36.0
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 1.9e-08 65.1 432 30.8
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 2.5e-08 64.7 514 28.0
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 2.5e-08 64.7 448 27.2
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 3.3e-08 64.3 608 26.8
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 5.6e-08 63.5 590 26.3
Lj1g0006481 Lotus japonicus HOM05D005518 ORTHO05D001269 7.4e-08 63.2 568 25.2
FAN25G1054 Fragaria x ananassa HOM05D005518 ORTHO05D001269 9.6e-08 62.8 527 27.3
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 1.6e-07 62.0 609 27.3
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 2.1e-07 61.6 244 28.7
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 2.1e-07 61.6 141 29.8
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 3.7e-07 60.8 610 24.3
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 4.8e-07 60.5 611 26.8
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 4.8e-07 60.5 417 28.5
Glyma.04G193600 Glycine max HOM05D005518 ORTHO05D001269 1.1e-06 59.3 400 28.5
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 1.4e-06 58.9 528 27.1
Rhsim12G0172400 Rhododendron simsii HOM05D005518 ORTHO05D001269 1.4e-06 58.9 597 26.1
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 1.8e-06 58.5 443 28.9
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 2.4e-06 58.2 445 29.2
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 2.4e-06 58.2 240 27.9
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 3.1e-06 57.8 423 27.7
Hma1.2p1_0892F.1_g233190 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 3.1e-06 57.8 50 58.0
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 4.0e-06 57.4 168 33.3
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 4.0e-06 57.4 168 33.3
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 4.0e-06 57.4 258 27.9
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 5.3e-06 57.0 94 40.4
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 5.3e-06 57.0 529 26.7
Gohir.A11G035500 Gossypium hirsutum HOM05D005518 ORTHO05D001269 5.3e-06 57.0 436 28.9
Gorai.007G042000 Gossypium raimondii HOM05D005518 ORTHO05D001269 5.3e-06 57.0 437 29.3
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 5.3e-06 57.0 524 27.3
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 9.0e-06 56.2 227 31.3


User provided reference genes

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