Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 0.0e+00 1152.1 605 100.0
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 5.0e-175 618.6 655 53.1
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 4.3e-174 615.5 648 55.2
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 2.8e-173 612.8 640 55.2
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 1.5e-166 590.5 656 50.5
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 1.2e-165 587.4 655 50.5
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 5.4e-161 572.0 661 48.7
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 4.6e-160 568.9 657 49.5
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 1.6e-157 560.5 659 46.6
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 6.2e-157 558.5 662 47.9
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 1.8e-156 557.0 660 47.7
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 7.5e-155 551.6 655 47.6
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.7e-154 550.4 658 47.3
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 2.4e-153 546.6 665 47.7
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 5.4e-153 545.4 660 47.1
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 4.6e-152 542.3 658 46.5
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 6.0e-152 542.0 662 46.8
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 7.8e-152 541.6 662 47.1
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 1.5e-150 537.3 658 46.4
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 1.2e-149 534.3 668 46.1
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.1e-149 533.5 665 46.3
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 1.2e-147 527.7 658 46.0
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 1.2e-147 527.7 628 46.5
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 2.6e-147 526.6 655 45.0
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 2.9e-146 523.1 658 46.0
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 4.9e-146 522.3 661 45.4
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 2.4e-145 520.0 659 45.1
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 5.4e-145 518.8 657 45.7
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 1.2e-144 517.7 651 44.5
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 1.6e-144 517.3 665 43.9
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 2.1e-144 516.9 656 45.9
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 6.0e-144 515.4 655 44.9
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 7.8e-144 515.0 658 44.2
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 1.0e-143 514.6 656 45.9
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 1.3e-143 514.2 656 45.9
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.0e-143 513.1 655 45.0
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 3.9e-143 512.7 699 43.2
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 6.6e-143 511.9 655 44.9
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.5e-142 510.8 663 44.6
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.9e-142 510.4 655 44.7
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 2.1e-141 506.9 674 44.5
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 2.1e-141 506.9 538 52.6
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 3.6e-141 506.1 660 44.2
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 6.2e-141 505.4 658 45.6
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 6.2e-141 505.4 658 45.6
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 3.1e-140 503.1 656 44.8
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 4.0e-140 502.7 658 45.6
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 4.0e-140 502.7 656 45.0
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.6e-139 500.0 655 44.3
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 5.8e-139 498.8 656 44.8
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 9.9e-139 498.0 662 44.1
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 9.9e-139 498.0 639 45.9
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 2.9e-138 496.5 659 44.3
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 3.8e-138 496.1 661 44.6
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 2.4e-137 493.4 658 44.4
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 5.4e-137 492.3 659 44.2
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 7.1e-137 491.9 662 44.4
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 7.1e-137 491.9 687 42.6
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 7.1e-137 491.9 699 42.3
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 9.3e-137 491.5 648 44.6
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 9.3e-137 491.5 659 44.2
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 1.0e-135 488.0 660 43.9
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 1.3e-135 487.6 596 45.6
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.9e-135 486.1 660 43.3
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 5.1e-135 485.7 663 43.4
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 1.1e-134 484.6 663 43.6
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 1.3e-133 481.1 648 44.1
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 4.8e-133 479.2 656 43.4
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 1.8e-132 477.2 663 41.6
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 2.4e-132 476.9 679 43.2
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 9.0e-132 474.9 655 44.0
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.1e-129 468.0 556 48.6
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 2.4e-129 466.8 556 48.4
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 2.1e-128 463.8 658 41.3
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 3.5e-128 463.0 651 42.5
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.8e-127 460.7 463 54.0
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 2.5e-126 456.8 649 41.6
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 5.6e-126 455.7 562 46.8
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 3.7e-125 453.0 689 40.5
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 2.6e-123 446.8 596 43.1
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 1.1e-121 441.4 654 40.8
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 6.7e-119 432.2 582 44.0
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 2.5e-118 430.3 657 41.6
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 3.3e-118 429.9 548 45.3
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 8.2e-117 425.2 651 39.0
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 6.9e-116 422.2 595 42.0
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 1.5e-115 421.0 658 39.4
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 7.6e-115 418.7 592 42.4
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.6e-112 411.0 556 42.6
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 1.8e-111 407.5 664 40.2
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 6.7e-111 405.6 597 41.2
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 1.1e-105 388.3 653 38.3
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 3.9e-103 379.8 419 51.6
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 2.2e-98 364.0 651 38.4
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 2.1e-96 357.5 498 44.0
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 1.1e-94 351.7 661 36.0
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.4e-92 344.0 436 45.2
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 5.2e-87 326.2 588 37.2
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 2.7e-80 303.9 576 35.8
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.2e-77 294.3 377 43.2
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 5.3e-76 289.7 433 41.8
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 2.3e-66 257.7 633 30.3
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 2.8e-64 250.8 508 34.1
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 1.7e-61 241.5 620 30.2
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 3.1e-60 237.3 521 36.5
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 3.1e-60 237.3 521 36.5
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 6.6e-58 229.6 187 64.2
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 3.6e-56 223.8 657 26.3
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 7.8e-51 206.1 218 53.2
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 2.5e-49 201.1 455 32.5
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 6.8e-47 193.0 366 38.3
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.5e-41 175.3 217 45.2
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 4.6e-35 153.7 132 64.4
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 6.0e-35 153.3 230 42.6
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 5.1e-34 150.2 230 42.2
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 5.6e-33 146.7 151 50.3
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.2e-32 145.6 435 28.5
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 7.6e-30 136.3 361 32.1
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 4.9e-29 133.7 147 49.0
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 3.5e-27 127.5 157 45.2
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 1.7e-26 125.2 201 40.3
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 8.1e-24 116.3 203 35.5
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 5.2e-23 113.6 135 45.9
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 1.3e-21 109.0 209 34.0
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 1.2e-19 102.4 136 36.0
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.7e-18 98.6 418 26.1
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.1e-18 97.1 110 50.0
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 9.6e-17 92.8 138 37.7
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 6.2e-16 90.1 65 66.2
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 1.8e-15 88.6 68 64.7
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 1.5e-14 85.5 181 31.5
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 1.3e-13 82.4 88 52.3
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.0e-10 72.8 105 36.2
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 4.3e-09 67.4 109 35.8
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 4.3e-09 67.4 41 78.0
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 8.1e-08 63.2 65 47.7
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 1.4e-07 62.4 57 50.9
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 1.8e-07 62.0 71 45.1
CsaV3_5G015120 Cucumis sativus L. HOM05D004744 ORTHO05D005655 9.0e-07 59.7 64 48.4
AUR62042108 Chenopodium quinoa HOM05D000216 ORTHO05D000634 9.9e-06 56.2 41 73.2
SEGI_21256 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 9.9e-06 56.2 71 39.4


User provided reference genes

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