Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 0.0e+00 2204.5 1118 100.0
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1135.6 1037 58.0
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1126.3 1030 58.1
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 5.3e-295 1018.1 1026 54.4
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 5.6e-289 998.0 1038 52.2
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 3.6e-288 995.3 1039 51.8
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.8e-282 976.5 1040 51.0
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 3.0e-282 975.7 1040 50.9
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 4.3e-281 971.8 1037 51.1
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 6.2e-280 968.0 1036 51.0
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 8.1e-280 967.6 1040 50.7
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 2.4e-279 966.1 1038 50.1
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 3.2e-276 955.7 1107 48.2
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 4.2e-276 955.3 1040 49.3
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 9.3e-276 954.1 1065 49.5
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 2.5e-273 946.0 1033 49.4
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 8.2e-272 941.0 1059 48.8
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 8.2e-272 941.0 1026 49.0
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 1.5e-270 936.8 1102 47.1
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 4.5e-270 935.3 1060 48.8
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 1.0e-269 934.1 1043 49.2
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 1.7e-269 933.3 1029 49.7
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 1.7e-269 933.3 1035 49.6
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 1.4e-268 930.2 1043 49.2
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 1.4e-268 930.2 1032 49.6
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 2.5e-268 929.5 1032 49.5
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 6.1e-267 924.9 1085 48.1
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 1.8e-266 923.3 1044 48.4
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 3.0e-266 922.5 1033 48.6
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 3.9e-266 922.2 1033 48.5
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 2.5e-265 919.5 1043 47.9
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 2.5e-265 919.5 1029 49.7
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 2.5e-265 919.5 1034 48.5
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 3.7e-264 915.6 1033 48.4
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 6.3e-264 914.8 1029 48.8
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 1.1e-263 914.1 1037 48.1
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.5e-261 904.4 981 49.7
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 2.5e-260 902.9 1031 47.9
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 6.7e-258 894.8 1120 45.9
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 2.6e-257 892.9 1037 47.5
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 8.2e-256 887.9 1036 47.7
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 1.1e-255 887.5 1037 47.9
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 4.1e-255 885.6 1029 47.4
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 4.1e-255 885.6 1036 47.4
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 1.2e-254 884.0 1036 47.4
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 1.3e-253 880.6 802 58.6
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 2.9e-253 879.4 1037 46.9
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 1.4e-250 870.5 1035 46.5
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 1.8e-250 870.2 1039 48.2
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 4.4e-249 865.5 1023 48.0
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 3.1e-247 859.4 1066 45.4
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 1.6e-246 857.1 1030 45.5
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 3.5e-246 855.9 1027 46.6
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 5.9e-246 855.1 1053 45.4
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 7.7e-246 854.7 1035 46.5
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 2.5e-244 849.7 1026 47.6
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 6.1e-243 845.1 1051 45.4
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 9.7e-241 837.8 1040 45.2
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 1.3e-240 837.4 1038 45.6
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.3e-240 837.4 1036 45.4
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.2e-240 836.6 1060 45.2
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 4.1e-239 832.4 1066 44.2
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 1.0e-237 827.8 1041 45.3
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 8.5e-237 824.7 1035 44.4
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 1.5e-236 823.9 1032 46.0
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 7.2e-236 821.6 1059 44.6
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 2.6e-233 813.1 1033 44.2
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 7.5e-233 811.6 1034 44.5
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 9.8e-233 811.2 881 50.2
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 3.7e-232 809.3 1041 44.6
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 6.3e-232 808.5 1033 44.1
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 6.3e-232 808.5 1033 43.6
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 9.1e-231 804.7 1034 43.9
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 2.0e-230 803.5 1022 44.5
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 2.0e-230 803.5 1022 44.5
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 2.0e-230 803.5 1022 44.5
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 2.0e-230 803.5 1036 44.0
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 2.7e-230 803.1 1033 44.6
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 3.5e-230 802.7 1032 45.4
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 4.5e-230 802.4 1050 43.9
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 7.7e-230 801.6 1034 43.8
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 3.0e-226 789.6 1038 44.3
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 1.3e-208 731.1 844 47.4
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 1.5e-196 691.0 1034 40.7
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 1.3e-192 677.9 865 44.7
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 8.4e-192 675.2 1058 39.6
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 2.7e-190 670.2 1038 40.7
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 5.8e-185 652.5 1033 39.6
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 5.5e-167 592.8 657 49.2
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.2e-163 579.3 611 50.7
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 1.3e-157 561.6 997 35.9
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.1e-151 542.0 797 40.4
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.1e-151 542.0 840 39.6
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.3e-148 530.4 648 45.8
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 2.4e-138 497.7 542 48.7
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.3e-131 475.3 535 48.8
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 1.8e-117 428.3 522 45.6
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 4.2e-111 407.1 437 50.3
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 3.1e-106 391.0 418 49.5
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 1.9e-103 381.7 1031 29.6
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 4.3e-103 380.6 403 50.1
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 1.3e-99 369.0 1087 29.4
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.2e-97 362.5 432 46.3
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 4.3e-95 354.0 447 45.0
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 2.1e-94 351.7 952 29.8
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 9.8e-92 342.8 342 55.3
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.8e-84 317.0 339 50.4
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.4e-77 295.8 351 47.6
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 3.2e-66 258.1 345 41.4
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 7.1e-66 256.9 458 36.7
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 1.0e-64 253.1 281 47.0
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 1.6e-57 229.2 287 46.0
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 1.6e-54 219.2 1172 24.5
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 3.7e-54 218.0 161 66.5
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 5.8e-52 210.7 260 46.5
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.4e-43 180.3 201 48.8
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 2.3e-40 172.2 259 41.3
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 3.7e-38 164.9 143 58.0
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 2.7e-33 148.7 143 53.1
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 6.3e-30 137.5 156 45.5
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 1.8e-29 136.0 140 52.1
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 2.7e-25 122.1 184 40.2
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.5e-23 116.3 139 47.5
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.6e-20 105.5 146 42.5
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 3.8e-19 101.7 123 45.5
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 8.5e-19 100.5 89 53.9
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.6e-17 95.1 104 46.2
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 3.9e-16 91.7 117 42.7
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.6e-12 79.0 122 40.2
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 2.9e-11 75.5 103 42.7
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 2.3e-08 65.9 119 37.0
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 1.5e-07 63.2 107 35.5
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 2.8e-06 58.9 50 56.0
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 2.8e-06 58.9 50 56.0


User provided reference genes

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