Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 0.0e+00 1614.7 826 100.0
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 1.4e-265 919.8 853 59.6
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 7.4e-262 907.5 853 58.1
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 2.7e-248 862.4 840 56.9
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 3.5e-235 818.9 845 53.5
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 4.1e-228 795.4 1005 47.8
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 4.7e-224 781.9 849 51.7
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 1.5e-222 776.9 854 49.8
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 7.0e-220 768.1 847 50.3
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 2.3e-218 763.1 844 50.1
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 3.0e-215 752.7 848 49.4
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 1.3e-213 747.3 843 48.9
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 4.9e-213 745.3 738 54.7
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 1.4e-212 743.8 936 46.8
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 2.4e-212 743.0 842 49.5
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 1.7e-210 736.9 842 48.3
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 4.3e-209 732.3 905 47.7
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 2.8e-208 729.6 846 48.6
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 1.0e-207 727.6 861 47.5
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 1.8e-207 726.9 844 48.7
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 2.3e-207 726.5 842 48.7
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 1.5e-206 723.8 846 47.4
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 4.4e-206 722.2 845 47.5
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 1.2e-203 714.1 856 47.2
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 2.0e-203 713.4 845 47.9
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.0e-202 711.1 844 46.3
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 3.0e-202 709.5 844 46.0
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 3.9e-202 709.1 853 48.2
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 3.9e-202 709.1 856 46.8
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.1e-201 707.6 844 46.1
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 1.5e-201 707.2 860 47.7
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 2.5e-201 706.4 844 46.2
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 4.3e-201 705.7 847 46.2
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 2.1e-200 703.4 856 46.1
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 8.0e-200 701.4 844 45.3
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 4.4e-198 695.7 861 45.8
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 9.8e-198 694.5 844 46.1
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 1.7e-197 693.7 839 46.0
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 4.9e-197 692.2 842 47.6
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 6.4e-197 691.8 862 46.3
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 8.3e-197 691.4 859 47.7
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 7.0e-196 688.3 866 47.3
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 2.7e-195 686.4 861 47.3
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 3.5e-195 686.0 842 46.3
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 4.6e-195 685.6 849 46.2
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 6.0e-195 685.3 850 46.6
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 3.0e-194 682.9 841 45.5
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 1.5e-193 680.6 845 45.7
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.9e-193 680.2 839 45.2
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 3.1e-191 672.9 842 44.8
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 8.9e-191 671.4 839 44.7
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 1.2e-190 671.0 839 45.1
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 2.4e-188 663.3 847 44.4
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 3.5e-187 659.4 854 44.7
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 3.0e-186 656.4 877 43.6
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 2.1e-184 650.2 854 44.5
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 4.7e-184 649.0 838 43.7
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 1.1e-180 637.9 843 43.8
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 4.2e-180 636.0 868 42.7
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 5.4e-180 635.6 731 49.2
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 1.6e-179 634.0 978 41.0
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.3e-178 630.2 851 45.2
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 2.3e-178 630.2 841 43.8
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 5.6e-177 625.5 845 44.3
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 8.1e-176 621.7 845 43.4
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 8.1e-176 621.7 845 43.4
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 8.1e-176 621.7 845 43.4
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 8.1e-176 621.7 843 42.8
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 8.1e-176 621.7 1019 39.9
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 1.8e-175 620.5 842 43.2
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 2.0e-174 617.1 845 42.5
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 2.2e-173 613.6 845 43.6
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 8.4e-173 611.7 845 43.4
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 2.4e-172 610.1 842 42.5
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 4.6e-171 605.9 845 43.1
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 2.3e-170 603.6 842 42.6
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 1.5e-169 600.9 938 39.3
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 1.6e-163 580.9 847 40.6
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 7.1e-156 555.4 708 45.1
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 2.5e-148 530.4 703 42.7
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 3.2e-148 530.0 930 36.3
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 3.7e-144 516.5 878 38.7
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 3.2e-132 476.9 773 41.9
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 4.5e-126 456.4 503 49.5
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 9.4e-124 448.7 588 43.9
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 5.2e-122 443.0 703 40.1
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 2.2e-120 437.6 841 35.3
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 9.4e-116 422.2 492 47.8
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 3.7e-112 410.2 857 35.6
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.4e-111 407.5 451 48.3
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 4.1e-111 406.8 633 41.1
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 2.9e-101 374.0 878 31.8
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.3e-96 356.3 367 50.7
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 5.6e-92 343.2 432 46.1
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.0e-86 324.7 333 51.4
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 9.5e-84 315.8 349 47.6
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 9.5e-84 315.8 451 42.8
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 1.5e-81 308.5 395 47.1
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 2.2e-80 304.7 348 50.0
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 4.9e-72 276.9 616 33.4
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 1.0e-69 269.2 358 47.2
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 1.1e-66 259.2 862 26.8
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 5.8e-65 253.4 249 50.2
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 4.6e-54 217.2 213 55.9
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 7.3e-52 209.9 223 53.8
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 4.8e-51 207.2 310 39.7
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 2.6e-49 201.4 196 56.1
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 2.1e-46 191.8 221 44.8
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 4.5e-41 174.1 136 64.7
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 8.4e-40 169.9 277 39.7
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.4e-39 169.1 207 44.0
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 1.6e-38 165.6 136 64.7
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.3e-37 162.5 268 41.4
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 1.5e-36 159.1 808 25.1
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.5e-33 149.1 256 36.3
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.9e-31 142.1 224 40.2
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.5e-31 141.7 133 54.9
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.1e-30 138.7 203 42.9
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.9e-29 134.4 140 51.4
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.5e-25 122.5 172 38.4
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.2e-22 112.8 177 36.7
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 3.9e-21 107.8 133 42.9
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 6.9e-18 97.1 75 53.3
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 1.3e-16 92.8 134 38.8
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 3.2e-15 88.2 63 69.8
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 1.6e-14 85.9 127 41.7
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 5.7e-12 77.4 87 51.7
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 1.7e-11 75.9 122 32.8
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 4.8e-11 74.3 52 61.5
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.4e-10 72.8 53 54.7
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 3.1e-10 71.6 173 32.4
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 9.1e-10 70.1 118 36.4
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 7.2e-07 60.5 80 45.0


User provided reference genes

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