Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 3.9e-218 761.9 635 100.0
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 4.3e-92 343.2 627 72.9
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 5.6e-92 342.8 627 73.2
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 6.2e-83 312.8 621 69.6
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.2e-78 298.5 617 70.2
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 4.7e-75 286.6 624 69.4
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 1.5e-68 265.0 632 66.3
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 1.5e-68 265.0 631 66.2
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 5.6e-68 263.1 623 67.1
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 8.1e-67 259.2 635 66.0
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 2.4e-66 257.7 631 65.8
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 7.9e-62 242.7 635 66.1
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 7.9e-62 242.7 653 63.1
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 3.0e-61 240.7 619 66.2
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 3.7e-59 233.8 628 66.6
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 8.1e-59 232.6 638 63.6
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 8.1e-59 232.6 629 65.0
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 1.1e-58 232.3 633 65.9
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 6.9e-58 229.6 624 63.6
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 1.5e-57 228.4 635 63.9
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 2.0e-57 228.0 627 64.4
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 2.6e-57 227.6 630 65.4
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 3.4e-57 227.3 625 63.7
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 9.9e-57 225.7 600 65.7
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 9.9e-57 225.7 639 62.9
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 2.2e-56 224.6 630 65.2
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 3.8e-56 223.8 625 63.7
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 4.9e-56 223.4 631 63.7
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 4.9e-56 223.4 633 64.0
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 6.4e-56 223.0 636 64.2
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 8.4e-56 222.6 635 64.4
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 2.5e-55 221.1 619 64.0
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 4.2e-55 220.3 635 64.6
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 4.2e-55 220.3 630 64.3
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 5.5e-55 219.9 631 64.0
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.2e-54 218.8 630 63.3
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 2.1e-54 218.0 636 62.7
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 4.6e-54 216.9 630 64.8
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 6.0e-54 216.5 628 63.7
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 7.9e-54 216.1 638 63.5
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.3e-53 214.5 631 63.2
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 6.7e-53 213.0 634 63.4
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 6.7e-53 213.0 633 63.7
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 2.5e-52 211.1 626 63.7
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 4.3e-52 210.3 632 63.4
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 5.6e-52 209.9 618 64.7
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 7.4e-52 209.5 626 63.1
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.1e-51 208.0 630 64.1
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 2.1e-51 208.0 628 64.6
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 2.1e-51 208.0 624 62.7
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 2.1e-51 208.0 624 62.7
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 2.1e-51 208.0 629 63.8
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 8.2e-51 206.1 625 63.8
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 1.1e-50 205.7 626 62.8
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 1.8e-50 204.9 613 64.6
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 9.0e-50 202.6 602 66.9
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 1.2e-49 202.2 631 63.7
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 2.0e-49 201.4 616 63.6
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 2.6e-49 201.1 617 64.8
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 7.6e-49 199.5 639 61.3
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 7.6e-49 199.5 614 64.3
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.7e-48 198.4 619 63.2
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 2.2e-48 198.0 626 62.1
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 3.8e-48 197.2 617 64.8
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.8e-48 197.2 589 66.2
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 6.5e-48 196.4 626 62.0
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 1.1e-47 195.7 611 62.4
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 1.4e-47 195.3 635 60.8
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.9e-47 194.9 623 62.9
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 1.9e-47 194.9 615 64.4
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 1.9e-47 194.9 626 62.0
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 2.5e-47 194.5 606 64.4
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 2.5e-47 194.5 606 64.4
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 1.8e-45 188.3 585 66.3
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 3.0e-45 187.6 641 59.6
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 8.7e-45 186.0 641 59.6
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.3e-44 184.1 587 62.9
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 2.8e-43 181.0 629 62.6
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 3.7e-43 180.6 628 60.2
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.4e-42 177.9 641 61.3
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 4.1e-42 177.2 630 61.7
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 5.3e-42 176.8 611 62.8
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 5.3e-42 176.8 620 61.3
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 2.0e-41 174.9 624 62.7
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.0e-40 172.6 625 62.4
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.9e-39 168.3 605 62.3
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.9e-39 168.3 610 61.6
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 5.5e-39 166.8 636 61.0
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 1.8e-37 161.8 633 61.0
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 3.0e-37 161.0 630 61.4
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 8.8e-37 159.5 600 41.8
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 1.1e-36 159.1 619 62.0
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 4.3e-36 157.1 635 49.8
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 1.3e-35 155.6 230 70.4
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 8.2e-35 152.9 240 42.1
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.4e-34 152.1 611 61.2
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 2.0e-33 148.3 630 54.0
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 2.9e-32 144.4 614 60.9
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 5.0e-32 143.7 612 60.9
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 5.0e-32 143.7 617 61.3
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 6.5e-32 143.3 608 60.9
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 4.2e-31 140.6 605 62.1
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 5.5e-31 140.2 612 60.1
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 7.2e-31 139.8 625 57.9
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 2.1e-30 138.3 610 60.5
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 2.3e-29 134.8 629 60.3
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 3.9e-29 134.0 630 56.0
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 5.1e-29 133.7 572 62.2
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 8.8e-29 132.9 620 59.5
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 3.3e-28 131.0 241 39.4
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 7.4e-28 129.8 607 61.8
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 9.7e-28 129.4 592 62.2
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 9.7e-28 129.4 592 62.2
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 1.7e-27 128.6 611 60.1
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 4.8e-27 127.1 628 57.6
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 1.4e-26 125.6 573 63.5
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 1.4e-26 125.6 606 61.4
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 1.8e-26 125.2 441 76.0
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 1.7e-24 118.6 592 61.3
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 2.9e-24 117.9 592 61.3
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.4e-23 115.5 601 60.1
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 9.4e-23 112.8 612 59.6
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 3.6e-22 110.9 612 58.3
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 3.6e-22 110.9 600 59.5
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 8.0e-22 109.8 629 58.0
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.8e-21 108.6 611 58.6
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 5.2e-21 107.1 612 58.5
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 5.2e-21 107.1 591 54.1
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 6.7e-21 106.7 581 59.4
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 6.7e-21 106.7 626 47.0
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 8.8e-21 106.3 228 36.4
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 4.4e-20 104.0 576 59.4
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 2.8e-19 101.3 629 55.2
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 6.3e-19 100.1 216 38.0
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.6e-17 95.5 184 41.8
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 7.7e-17 93.2 251 32.7
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 2.2e-16 91.7 621 47.7
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 2.2e-16 91.7 187 34.2
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 6.5e-16 90.1 190 37.9
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 8.5e-16 89.7 619 55.7
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.9e-15 88.6 241 33.2
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 9.4e-15 86.3 212 36.3
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 2.1e-14 85.1 431 52.0
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 2.7e-14 84.7 194 34.5
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 6.1e-14 83.6 606 57.1
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 4.0e-13 80.9 140 42.1
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 4.0e-13 80.9 613 56.9
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 4.0e-13 80.9 613 56.9
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 4.0e-13 80.9 205 34.6
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 2.0e-12 78.6 205 34.1
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 7.5e-12 76.6 111 43.2
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 9.7e-12 76.3 225 33.8
Haze_09990 Corylus avellana HOM05D003963 ORTHO05D004558 3.7e-11 74.3 49 69.4
Hma1.2p1_0217F.1_g091700 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.8e-11 73.9 102 48.0
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.8e-10 72.0 180 33.9
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 3.1e-10 71.2 601 56.7
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 3.5e-09 67.8 186 34.4
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 3.5e-09 67.8 186 34.4
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 1.7e-08 65.5 204 31.9
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 2.2e-08 65.1 114 40.4
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 6.5e-08 63.5 148 34.5
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 6.5e-08 63.5 127 37.8
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 8.5e-08 63.2 211 30.3
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 1.1e-07 62.8 124 37.9
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.5e-07 61.6 228 29.8
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 9.4e-07 59.7 131 35.9
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 9.4e-07 59.7 115 36.5
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 9.4e-07 59.7 231 31.6
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 1.2e-06 59.3 118 35.6
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 2.1e-06 58.5 230 28.7
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 3.6e-06 57.8 112 36.6
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 4.7e-06 57.4 140 32.1
SEGI_29670 Sequoiadendron giganteum HOM05D003963 ORTHO05D004558 4.7e-06 57.4 124 33.9
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 4.7e-06 57.4 111 38.7
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 6.1e-06 57.0 109 36.7
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 8.0e-06 56.6 111 36.9


User provided reference genes

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