Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.3e-114 416.4 205 100.0
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 1.4e-68 263.5 157 81.5
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 9.3e-65 250.8 148 81.8
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.7e-64 249.2 151 78.1
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.7e-64 249.2 153 77.1
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 3.5e-64 248.8 148 77.7
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 6.0e-64 248.1 153 76.5
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 1.0e-63 247.3 148 76.4
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.3e-63 246.9 148 78.4
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.3e-63 246.9 148 78.4
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 1.8e-63 246.5 148 76.4
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.8e-63 246.5 152 76.3
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 2.3e-63 246.1 154 72.7
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 2.3e-63 246.1 148 78.4
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 3.0e-63 245.7 148 78.4
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 3.9e-63 245.4 153 74.5
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 5.1e-63 245.0 148 78.4
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 6.7e-63 244.6 152 75.0
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.1e-62 243.8 152 75.0
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 1.5e-62 243.4 148 77.7
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.9e-62 243.0 154 72.1
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.9e-62 243.0 154 72.1
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.3e-62 242.3 148 77.0
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.3e-62 242.3 148 77.7
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 4.3e-62 241.9 153 75.2
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 4.3e-62 241.9 148 76.4
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 5.7e-62 241.5 151 74.8
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 1.3e-61 240.4 154 74.0
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 1.6e-61 240.0 148 77.0
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 2.8e-61 239.2 145 77.2
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.8e-61 239.2 148 75.0
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 2.8e-61 239.2 148 74.3
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 2.8e-61 239.2 151 74.2
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 4.8e-61 238.4 148 76.4
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 8.2e-61 237.7 152 73.0
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 2.4e-60 236.1 152 73.0
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 2.4e-60 236.1 147 76.2
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 2.4e-60 236.1 148 73.0
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 4.1e-60 235.3 148 75.0
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 4.1e-60 235.3 148 75.7
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 5.3e-60 235.0 148 75.0
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.9e-60 234.6 150 73.3
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 6.9e-60 234.6 148 73.0
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 9.0e-60 234.2 148 75.0
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 9.0e-60 234.2 147 74.8
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 9.0e-60 234.2 159 68.6
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 9.0e-60 234.2 148 73.0
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 1.5e-59 233.4 148 73.6
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.5e-59 233.4 145 74.5
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 2.0e-59 233.0 151 71.5
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 2.6e-59 232.6 156 72.4
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 3.4e-59 232.3 148 72.3
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 3.4e-59 232.3 147 74.1
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 4.5e-59 231.9 151 70.9
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 4.5e-59 231.9 148 75.0
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 4.5e-59 231.9 148 73.6
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 4.5e-59 231.9 148 73.6
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 5.9e-59 231.5 148 73.6
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 7.6e-59 231.1 148 72.3
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 1.0e-58 230.7 155 69.7
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.7e-58 229.9 144 74.3
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.7e-58 229.9 147 72.8
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 1.7e-58 229.9 152 70.4
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 1.7e-58 229.9 151 69.5
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 2.2e-58 229.6 147 73.5
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 2.2e-58 229.6 148 72.3
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 2.9e-58 229.2 151 70.2
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 2.9e-58 229.2 155 70.3
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 2.9e-58 229.2 148 73.0
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 2.9e-58 229.2 153 71.9
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.9e-58 229.2 148 71.6
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.5e-58 228.0 146 72.6
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.5e-58 228.0 146 72.6
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 6.5e-58 228.0 148 73.6
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 8.5e-58 227.6 155 69.7
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 8.5e-58 227.6 148 70.9
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 8.5e-58 227.6 148 73.0
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.1e-57 227.3 170 62.9
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.1e-57 227.3 148 71.6
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 1.4e-57 226.9 148 71.6
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 2.5e-57 226.1 147 71.4
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 2.5e-57 226.1 148 73.0
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 5.5e-57 224.9 151 68.2
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 7.2e-57 224.6 148 70.9
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 7.2e-57 224.6 148 70.3
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 7.2e-57 224.6 147 70.7
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 7.2e-57 224.6 144 74.3
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.3e-57 224.2 155 69.7
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 9.3e-57 224.2 146 70.5
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.2e-56 223.8 144 73.6
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 1.2e-56 223.8 152 71.7
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.6e-56 223.4 153 69.3
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.6e-56 223.4 151 69.5
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 3.6e-56 222.2 154 70.1
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 6.1e-56 221.5 148 69.6
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 6.1e-56 221.5 148 72.3
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 7.9e-56 221.1 148 70.9
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 7.9e-56 221.1 154 67.5
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 3.9e-55 218.8 147 69.4
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 6.7e-55 218.0 153 68.0
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 6.7e-55 218.0 151 68.2
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 9.7e-54 214.2 148 64.9
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 3.7e-53 212.2 148 68.9
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 6.3e-53 211.5 148 63.5
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 1.8e-52 209.9 148 65.5
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 2.4e-52 209.5 146 68.5
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 3.1e-52 209.1 149 63.8
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.1e-52 208.8 143 68.5
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.9e-52 208.0 146 67.1
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 9.1e-52 207.6 148 63.5
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 9.1e-52 207.6 177 55.9
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.2e-51 207.2 151 62.3
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.2e-51 207.2 148 63.5
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.2e-51 207.2 148 62.8
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 2.0e-51 206.5 148 64.9
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 2.0e-51 206.5 148 62.8
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 5.9e-51 204.9 148 62.2
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 7.7e-51 204.5 148 62.8
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 7.7e-51 204.5 148 63.5
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.0e-50 204.1 148 66.9
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 1.3e-50 203.8 145 63.4
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 1.1e-49 200.7 145 64.1
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.2e-49 199.1 153 63.4
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.2e-48 197.2 152 59.9
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 4.6e-48 195.3 166 56.0
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 4.6e-48 195.3 151 59.6
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 3.7e-45 185.7 122 75.4
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 1.2e-43 180.6 148 56.8
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 3.4e-43 179.1 145 54.5
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 1.0e-42 177.6 120 70.0
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.9e-41 173.3 114 71.1
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 8.8e-39 164.5 109 69.7
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 2.6e-38 162.9 109 68.8
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 3.3e-38 162.5 123 60.2
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 4.8e-37 158.7 179 50.3
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 8.5e-34 147.9 145 48.3
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 3.6e-32 142.5 95 71.6
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 7.5e-30 134.8 145 47.6
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.7e-29 132.5 99 64.6
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 3.8e-26 122.5 70 80.0
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 5.0e-26 122.1 73 75.3
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 6.5e-26 121.7 120 54.2
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.5e-25 120.6 73 78.1
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 8.8e-23 111.3 75 68.0
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.5e-22 110.5 75 69.3
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 5.7e-22 108.6 75 69.3
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.8e-21 106.3 145 38.6
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.3e-21 105.1 58 79.3
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 6.3e-21 105.1 58 79.3
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.2e-19 100.9 89 55.1
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 2.0e-19 100.1 78 62.8
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 3.6e-08 62.8 48 62.5


User provided reference genes

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