Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.3e-160 569.7 292 100.0
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 1.1e-108 397.1 254 74.8
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 5.7e-108 394.8 226 81.0
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.8e-107 392.5 229 81.7
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 7.0e-106 387.9 220 82.3
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.1e-103 380.6 225 79.6
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.0e-96 355.1 225 77.8
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 1.9e-95 353.2 225 77.3
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.9e-95 353.2 225 77.3
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 9.4e-95 350.9 247 73.3
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.1e-94 349.7 232 75.4
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.0e-93 347.4 242 70.7
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 1.4e-93 347.1 224 75.9
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.3e-93 346.3 232 75.4
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.6e-92 342.8 227 72.2
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 2.6e-92 342.8 213 78.4
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.4e-92 342.4 225 73.3
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.4e-92 342.4 225 73.3
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 3.4e-92 342.4 236 72.9
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.7e-92 341.7 249 70.3
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 1.7e-91 340.1 213 77.0
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 1.7e-91 340.1 215 76.3
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 2.2e-91 339.7 213 77.9
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.8e-91 339.3 241 71.4
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 3.7e-91 339.0 224 75.9
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 6.3e-91 338.2 226 74.3
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 6.3e-91 338.2 226 74.8
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.1e-90 337.4 232 72.0
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.1e-90 337.4 232 71.6
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 1.8e-90 336.7 234 72.6
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 2.4e-90 336.3 232 71.6
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.4e-90 336.3 220 75.5
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 3.1e-90 335.9 214 75.7
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 3.1e-90 335.9 215 75.3
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 3.1e-90 335.9 215 75.8
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 3.1e-90 335.9 212 76.9
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 5.4e-90 335.1 217 76.0
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 7.0e-90 334.7 249 65.9
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 9.1e-90 334.3 215 74.9
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 9.1e-90 334.3 230 70.9
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 9.1e-90 334.3 213 76.5
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 9.1e-90 334.3 220 75.0
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.2e-89 334.0 227 72.2
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.2e-89 334.0 214 76.6
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.2e-89 334.0 216 75.9
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 1.6e-89 333.6 236 69.1
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 2.7e-89 332.8 219 74.4
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 2.7e-89 332.8 213 76.1
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 4.5e-89 332.0 230 71.3
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.5e-89 332.0 208 77.4
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 5.9e-89 331.6 212 76.9
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 5.9e-89 331.6 216 74.5
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 5.9e-89 331.6 231 68.8
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 1.0e-88 330.9 213 75.6
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.0e-88 330.9 219 74.9
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.3e-88 330.5 211 76.8
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 1.3e-88 330.5 215 74.4
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.3e-88 330.5 213 75.6
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 3.8e-88 328.9 230 71.3
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.1e-87 327.4 243 67.5
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 1.5e-87 327.0 215 73.0
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 1.5e-87 327.0 215 73.0
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.5e-87 327.0 215 73.0
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.9e-87 326.6 210 74.3
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.9e-87 326.6 210 74.3
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.9e-87 326.6 212 74.5
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 1.9e-87 326.6 225 71.1
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 2.5e-87 326.2 224 72.3
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 3.2e-87 325.9 209 77.0
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 3.2e-87 325.9 229 72.5
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 4.2e-87 325.5 244 66.0
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 9.5e-87 324.3 212 74.1
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 1.2e-86 323.9 224 71.4
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 1.2e-86 323.9 249 65.1
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 1.2e-86 323.9 249 65.1
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.2e-86 323.9 232 70.3
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.6e-86 323.6 249 65.1
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.6e-86 323.6 238 67.6
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 1.6e-86 323.6 220 71.4
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 2.1e-86 323.2 213 74.2
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.1e-86 323.2 215 71.6
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 3.6e-86 322.4 249 64.7
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 4.7e-86 322.0 225 70.7
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 4.7e-86 322.0 249 64.7
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 6.1e-86 321.6 218 71.1
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 6.1e-86 321.6 213 73.7
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 1.4e-85 320.5 259 65.3
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 1.8e-85 320.1 209 74.2
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.8e-85 320.1 218 72.9
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.8e-85 320.1 231 67.1
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 3.0e-85 319.3 209 75.1
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 4.0e-85 318.9 225 70.2
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 5.2e-85 318.5 213 72.8
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 6.8e-85 318.2 212 71.7
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.5e-84 317.0 210 71.9
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 1.5e-84 317.0 213 73.2
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 1.5e-84 317.0 224 70.5
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 2.0e-84 316.6 209 75.1
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 2.6e-84 316.2 212 73.1
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 2.6e-84 316.2 217 70.5
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 3.4e-84 315.8 225 70.7
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 4.4e-84 315.5 213 72.8
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 9.8e-84 314.3 248 64.5
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 1.7e-83 313.5 218 68.8
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 2.2e-83 313.2 227 67.4
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 1.1e-82 310.8 211 72.0
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.4e-82 310.5 216 71.3
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 4.1e-82 308.9 216 70.8
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 4.1e-82 308.9 216 70.8
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 9.2e-82 307.8 226 65.9
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 2.7e-81 306.2 216 70.4
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 4.5e-81 305.4 219 69.4
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 5.9e-81 305.1 239 64.0
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 2.3e-80 303.1 218 69.7
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 2.3e-80 303.1 235 64.7
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.9e-80 302.8 217 68.2
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 2.9e-80 302.8 216 69.9
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 3.8e-80 302.4 222 68.9
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 3.8e-80 302.4 223 69.1
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.5e-79 300.4 216 69.4
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 2.5e-79 299.7 218 67.0
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.3e-79 298.9 239 64.0
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 7.3e-79 298.1 210 69.5
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 9.5e-79 297.7 213 69.5
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 8.0e-78 294.7 230 65.7
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 8.0e-78 294.7 207 69.6
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.3e-77 293.1 211 66.8
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.0e-76 290.0 211 66.4
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 9.8e-76 287.7 225 66.7
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 9.8e-76 287.7 184 75.5
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 4.1e-74 282.3 216 62.5
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.7e-73 279.6 213 64.3
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 3.0e-72 276.2 179 73.7
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 3.3e-71 272.7 218 61.0
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 5.6e-71 271.9 218 60.6
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 5.6e-71 271.9 218 60.6
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.6e-70 270.4 218 60.1
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.6e-70 270.4 218 60.1
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.6e-70 270.4 218 60.1
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.5e-68 263.8 218 62.8
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.5e-68 263.8 176 73.9
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 3.2e-66 256.1 234 56.4
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 4.3e-63 245.7 230 56.5
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.1e-62 243.4 277 52.0
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.5e-60 237.3 230 56.5
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 3.7e-59 232.6 220 58.2
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.4e-58 230.7 227 54.6
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 7.8e-57 224.9 136 79.4
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 2.3e-56 223.4 136 78.7
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.5e-55 219.9 218 53.2
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 4.0e-53 212.6 132 77.3
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 7.1e-50 201.8 216 50.5
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.3e-48 197.6 218 49.5
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.7e-48 197.2 212 49.1
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.5e-39 166.8 160 49.4
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 3.6e-38 162.9 152 53.9
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.8e-37 160.6 176 52.8
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.1e-29 134.8 86 75.6
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 6.9e-21 105.5 64 73.4
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 5.8e-20 102.4 77 62.3
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 5.3e-13 79.3 64 59.4
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 5.3e-13 79.3 73 57.5
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 2.2e-11 73.9 89 44.9
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 2.2e-11 73.9 71 50.7
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 6.1e-09 65.9 81 46.9
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 2.5e-07 60.5 44 68.2
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.6e-06 57.8 40 65.0


User provided reference genes

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