Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06538 Selenicereus undatus HOM05D001993 ORTHO05D009037 2.2e-186 655.6 358 100.0
Thecc.01G153800 Theobroma cacao HOM05D001993 ORTHO05D009037 4.8e-141 505.0 343 79.6
Peaxi162Scf00108g00131 Petunia axillaris HOM05D001993 ORTHO05D009037 4.1e-140 501.9 343 79.6
Gorai.004G256300 Gossypium raimondii HOM05D001993 ORTHO05D009037 1.0e-138 497.3 343 78.7
PGSC0003DMG400024263 Solanum tuberosum HOM05D001993 ORTHO05D009037 1.3e-138 496.9 343 79.9
Cpa.g.sc10.126 Carica papaya HOM05D001993 ORTHO05D009037 6.5e-138 494.6 343 78.7
Nitab4.5_0000233g0190 Nicotiana tabacum HOM05D001993 ORTHO05D009037 6.5e-138 494.6 343 79.0
Sopen09g006100 Solanum pennellii HOM05D001993 ORTHO05D009037 8.5e-138 494.2 343 79.6
Solyc09g011370.3 Solanum lycopersicum HOM05D001993 ORTHO05D009037 3.2e-137 492.3 343 77.8
CAN.G697.13 Capsicum annuum HOM05D001993 ORTHO05D009037 5.5e-137 491.5 343 78.7
Potri.017G053400 Populus trichocarpa HOM05D001993 ORTHO05D009037 5.5e-137 491.5 284 81.7
Gohir.A08G221654 Gossypium hirsutum HOM05D001993 ORTHO05D009037 9.3e-137 490.7 341 78.6
Sabra17G0045400 Salix brachista HOM05D001993 ORTHO05D009037 1.2e-136 490.3 284 81.0
Sabra17G0040600 Salix brachista HOM05D001993 ORTHO05D009037 2.1e-136 489.6 284 81.0
COL.COLO4_33613 Corchorus olitorius HOM05D001993 ORTHO05D009037 5.7e-134 481.5 284 79.6
Duzib147G1049 Durio zibethinus HOM05D001993 ORTHO05D009037 2.2e-133 479.6 343 77.8
Actinidia30712 Actinidia chinensis HOM05D001993 ORTHO05D009037 4.8e-133 478.4 284 79.2
Gohir.D08G240900 Gossypium hirsutum HOM05D001993 ORTHO05D009037 8.2e-133 477.6 284 78.9
CSS0028818 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D009037 1.1e-132 477.2 278 81.3
Rhsim12G0188800 Rhododendron simsii HOM05D001993 ORTHO05D009037 3.1e-132 475.7 343 77.0
Sed0024162 Sechium edule HOM05D001993 ORTHO05D009037 5.3e-132 474.9 343 76.4
Lj3g0005746 Lotus japonicus HOM05D001993 ORTHO05D009037 1.5e-131 473.4 284 78.9
Manes.11G063100 Manihot esculenta HOM05D001993 ORTHO05D009037 1.5e-131 473.4 281 79.4
Atru.chr13.159 Acer truncatum HOM05D001993 ORTHO05D009037 3.4e-131 472.2 284 78.2
Prupe.3G094500 Prunus persica HOM05D001993 ORTHO05D009037 3.4e-131 472.2 284 78.9
MD17G1219000 Malus domestica HOM05D001993 ORTHO05D009037 4.5e-131 471.9 284 78.2
RcHm_v2.0_Chr2g0133701 Rosa chinensis HOM05D001993 ORTHO05D009037 4.5e-131 471.9 284 77.1
vmacro16868 Vaccinium macrocarpon HOM05D001993 ORTHO05D009037 1.0e-130 470.7 284 78.5
Psat5g303960 Pisum sativum HOM05D001993 ORTHO05D009037 2.2e-130 469.5 343 75.5
Haze_16628 Corylus avellana HOM05D001993 ORTHO05D009037 2.9e-130 469.2 278 79.5
CiPaw.01G251700 Carya illinoinensis HOM05D001993 ORTHO05D009037 5.0e-130 468.4 284 76.4
Ciclev10025548m.g Citrus clementina HOM05D001993 ORTHO05D009037 6.5e-130 468.0 284 77.5
Oeu010088.1 Olea europaea HOM05D001993 ORTHO05D009037 1.1e-129 467.2 283 78.4
Glyma.15G004900 Glycine max HOM05D001993 ORTHO05D009037 1.9e-129 466.5 284 78.2
Haze_16631 Corylus avellana HOM05D001993 ORTHO05D009037 3.2e-129 465.7 277 79.4
Cfa001914 Carpinus fangiana HOM05D001993 ORTHO05D009037 5.5e-129 464.9 275 80.0
Glyma.13G368900 Glycine max HOM05D001993 ORTHO05D009037 7.2e-129 464.5 284 78.2
Lalb_Chr14g0373981 Lupinus albus HOM05D001993 ORTHO05D009037 7.2e-129 464.5 284 77.5
TPR.G8903 Trifolium pratense HOM05D001993 ORTHO05D009037 1.2e-128 463.8 284 77.5
VMungo1080G1544 Vigna mungo HOM05D001993 ORTHO05D009037 2.1e-128 463.0 284 77.5
TPR.G19157 Trifolium pratense HOM05D001993 ORTHO05D009037 4.7e-128 461.8 284 76.8
THA.LOC104808190 Tarenaya hassleriana HOM05D001993 ORTHO05D009037 1.0e-127 460.7 344 69.8
CANSAT56G0483 Cannabis sativa HOM05D001993 ORTHO05D009037 2.3e-127 459.5 279 76.7
Phvul.005G181200 Phaseolus vulgaris HOM05D001993 ORTHO05D009037 3.0e-127 459.1 284 77.1
FAN09G0213 Fragaria x ananassa HOM05D001993 ORTHO05D009037 6.7e-127 458.0 284 75.0
TWI12G1056 Tripterygium wilfordii HOM05D001993 ORTHO05D009037 6.7e-127 458.0 284 76.4
ECA246G3767 Erigeron canadensis HOM05D001993 ORTHO05D009037 8.8e-127 457.6 344 71.5
MSTRG.22779 Avicennia marina HOM05D001993 ORTHO05D009037 1.1e-126 457.2 284 75.0
CsaV3_7G032050 Cucumis sativus L. HOM05D001993 ORTHO05D009037 1.1e-126 457.2 281 76.9
Medtr2g104760 Medicago truncatula HOM05D001993 ORTHO05D009037 1.1e-126 457.2 284 76.4
FvH4_6g29021 Fragaria vesca HOM05D001993 ORTHO05D009037 1.5e-126 456.8 285 74.0
Hma1.2p1_0109F.1_g052250 Hydrangea macrophylla HOM05D001993 ORTHO05D009037 1.5e-126 456.8 284 74.6
Lj5C77T4 Lonicera japonica HOM05D001993 ORTHO05D009037 1.5e-126 456.8 284 76.4
Sc12g0006740 Simmondsia chinensis HOM05D001993 ORTHO05D009037 5.7e-126 454.9 284 75.7
FAN05G0323 Fragaria x ananassa HOM05D001993 ORTHO05D009037 6.3e-125 451.4 284 74.3
Ca_01029_v3 Cicer arietinum L. HOM05D001993 ORTHO05D009037 8.2e-125 451.1 283 76.7
TAR625G0584 Trochodendron aralioides HOM05D001993 ORTHO05D009037 8.2e-125 451.1 279 75.3
Nn8g39702 Nelumbo nucifera HOM05D001993 ORTHO05D009037 1.1e-124 450.7 281 75.4
MELO3C023452.2 Cucumis melo HOM05D001993 ORTHO05D009037 1.4e-124 450.3 277 76.5
Migut.I00727 Erythranthe guttata HOM05D001993 ORTHO05D009037 1.8e-124 449.9 284 73.6
SalBow7G0151 Salvia bowleyana HOM05D001993 ORTHO05D009037 2.4e-124 449.5 285 74.0
Nitab4.5_0005460g0010 Nicotiana tabacum HOM05D001993 ORTHO05D009037 1.5e-123 446.8 343 73.8
ClCG09G003170 Citrullus lanatus HOM05D001993 ORTHO05D009037 5.9e-123 444.9 281 75.8
QL05p033907 Quercus lobata HOM05D001993 ORTHO05D009037 2.2e-122 443.0 309 70.2
Eucgr.J03091 Eucalyptus grandis HOM05D001993 ORTHO05D009037 3.8e-122 442.2 285 72.3
HanXRQChr05g0140811 Helianthus annuus HOM05D001993 ORTHO05D009037 3.2e-121 439.1 343 69.7
AUR62016603 Chenopodium quinoa HOM05D001993 ORTHO05D009037 7.2e-121 438.0 265 80.8
Ah.01g006660 Amaranthus hybridus HOM05D001993 ORTHO05D009037 2.7e-120 436.0 284 75.0
AT1G80570 Arabidopsis thaliana HOM05D001993 ORTHO05D009037 2.7e-120 436.0 343 69.7
Cc04_g04800 Coffea canephora HOM05D001993 ORTHO05D009037 1.0e-119 434.1 284 73.6
PGR031G2325 Punica granatum HOM05D001993 ORTHO05D009037 1.0e-119 434.1 278 72.7
AUR62011454 Chenopodium quinoa HOM05D001993 ORTHO05D009037 3.0e-119 432.6 261 80.5
Aa31LG4G850 Aethionema arabicum HOM05D001993 ORTHO05D009037 6.7e-119 431.4 284 72.5
ATR0767G064 Amborella trichopoda HOM05D001993 ORTHO05D009037 2.0e-118 429.9 282 70.6
arahy.Tifrunner.gnm1.ann1.8N7B8R Arachis hypogaea HOM05D001993 ORTHO05D009037 9.1e-116 421.0 284 70.8
SEGI_33239 Sequoiadendron giganteum HOM05D001993 ORTHO05D009037 9.1e-116 421.0 281 69.0
Aqoxy7G03544 Aquilegia oxysepala HOM05D001993 ORTHO05D009037 3.5e-115 419.1 286 69.9
BcaC03g15951 Brassica carinata HOM05D001993 ORTHO05D009037 5.9e-115 418.3 277 69.7
Lsat_1_v5_gn_5_7881 Lactuca sativa HOM05D001993 ORTHO05D009037 7.7e-115 417.9 284 69.0
BolC2t09726H Brassica oleracea HOM05D001993 ORTHO05D009037 2.2e-114 416.4 277 69.3
Carub.0002s2697 Capsella rubella HOM05D001993 ORTHO05D009037 5.0e-114 415.2 343 66.8
unitig_0.g1110 Utricularia gibba HOM05D001993 ORTHO05D009037 5.5e-113 411.8 283 68.2
AL2G40860 Arabidopsis lyrata HOM05D001993 ORTHO05D009037 1.6e-112 410.2 343 62.7
GSVIVG01017521001 Vitis vinifera HOM05D001993 ORTHO05D009037 3.6e-112 409.1 284 70.8
CDE05G1651 Ceratophyllum demersum HOM05D001993 ORTHO05D009037 3.0e-111 406.0 284 69.7
Thhalv10018507m.g Eutrema salsugineum HOM05D001993 ORTHO05D009037 4.1e-108 395.6 344 61.9
Sp5g35200 Schrenkiella parvula HOM05D001993 ORTHO05D009037 1.2e-104 384.0 343 61.8
BcaB05g25256 Brassica carinata HOM05D001993 ORTHO05D009037 1.7e-101 373.6 280 63.2
Dinv38158 Davidia involucrata HOM05D001993 ORTHO05D004040 7.7e-99 364.8 214 79.4
CARHR073940 Cardamine hirsuta HOM05D001993 ORTHO05D009037 8.0e-96 354.8 344 63.1
A02p23440 Brassica napus HOM05D002499 ORTHO05D009037 2.1e-88 330.1 278 57.9
BraA02t07336Z Brassica rapa HOM05D002499 ORTHO05D002812 3.6e-88 329.3 277 58.1
C02p37140 Brassica napus HOM05D002499 ORTHO05D002812 5.8e-86 322.0 277 57.8
Nn2g12225 Nelumbo nucifera HOM05D001993 ORTHO05D009037 9.8e-86 321.2 348 58.9
FAN05G0349 Fragaria x ananassa HOM05D001993 ORTHO05D009037 1.7e-85 320.5 284 56.3
Nn2g12227 Nelumbo nucifera HOM05D001993 ORTHO05D009037 4.0e-79 299.3 347 56.8
SalBow6G3135 Salvia bowleyana HOM05D001993 ORTHO05D009037 7.5e-70 268.5 159 77.4
Os12g0517100 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.5e-54 217.6 292 40.1
SMO137G0150 Selaginella moellendorffii HOM05D001993 ORTHO05D009037 2.0e-54 217.2 347 38.0
Os04g0370600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 7.1e-52 208.8 293 40.3
Os12g0516900 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 6.0e-51 205.7 286 41.6
Os12g0517000 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.0e-50 204.9 294 40.1
Os04g0370500 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 5.3e-39 166.0 295 36.6
FAN02G3408 Fragaria x ananassa HOM05D001993 ORTHO05D009037 2.6e-38 163.7 103 73.8
BcaB05g22992 Brassica carinata HOM05D001993 ORTHO05D009037 3.9e-34 149.8 131 56.5
Mapoly0145s0024 Marchantia polymorpha HOM05D001993 ORTHO05D009037 6.9e-31 139.0 297 30.6
Os04g0371600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.4e-28 131.3 224 35.3
Os02g0798800 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 1.2e-22 111.7 177 36.7
Os12g0526600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 5.5e-20 102.8 92 51.1
Os02g0798900 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 3.0e-18 97.1 85 48.2
Os04g0370300 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 7.9e-11 72.4 83 42.2
MD02G1178100 Malus domestica HOM05D001905 ORTHO05D001820 1.8e-07 61.2 255 27.5
Thecc.08G001200 Theobroma cacao HOM05D001905 ORTHO05D001820 1.8e-07 61.2 305 25.2
SalBow5G3486 Salvia bowleyana HOM05D001905 ORTHO05D001820 5.3e-07 59.7 256 22.3
SalBow5G5277 Salvia bowleyana HOM05D001905 ORTHO05D001820 5.3e-07 59.7 256 22.3
Gohir.A06G021300 Gossypium hirsutum HOM05D001905 ORTHO05D001820 1.2e-06 58.5 307 24.8
Gohir.D06G019072 Gossypium hirsutum HOM05D001905 ORTHO05D001820 1.2e-06 58.5 307 24.8
COL.COLO4_10116 Corchorus olitorius HOM05D001905 ORTHO05D001820 1.5e-06 58.2 304 25.0
Zm00001eb137200 Zea mays HOM05D002125 ORTHO05D002105 2.0e-06 57.8 75 42.7
Ciclev10000831m.g Citrus clementina HOM05D001905 ORTHO05D001820 2.6e-06 57.4 303 25.7
TPR.G9668 Trifolium pratense HOM05D001219 ORTHO05D001017 2.6e-06 57.4 213 25.8
Zm00001eb410120 Zea mays HOM05D002125 ORTHO05D002105 2.6e-06 57.4 75 41.3
MD15G1288000 Malus domestica HOM05D001905 ORTHO05D001820 3.5e-06 57.0 255 27.1
Os12g0552700 Oryza sativa ssp. japonica HOM05D002125 ORTHO05D002105 3.5e-06 57.0 75 41.3
Gorai.010G022900 Gossypium raimondii HOM05D001905 ORTHO05D001820 4.5e-06 56.6 307 24.4
Prupe.6G229800 Prunus persica HOM05D001905 ORTHO05D001820 5.9e-06 56.2 227 26.9
Cpa.g.sc21.154 Carica papaya HOM05D001905 ORTHO05D001820 7.7e-06 55.8 307 25.7


User provided reference genes

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