Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06534 Selenicereus undatus HOM05D003294 ORTHO05D004060 4.1e-85 320.1 665 100.0
Hund31331 Selenicereus undatus HOM05D003294 ORTHO05D004060 3.6e-41 174.1 111 72.1
Hund31332 Selenicereus undatus HOM05D003294 ORTHO05D004060 3.6e-41 174.1 111 72.1
Cc03_g11110 Coffea canephora HOM05D003294 ORTHO05D004060 7.5e-39 166.4 125 64.8
Peaxi162Scf00323g00618 Petunia axillaris HOM05D003294 ORTHO05D004060 7.5e-39 166.4 122 63.1
Cpa.g.sc164.2 Carica papaya HOM05D003294 ORTHO05D004060 8.3e-38 162.9 122 64.8
Nitab4.5_0000383g0350 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.2e-36 159.1 122 62.3
Nn1g09740 Nelumbo nucifera HOM05D003294 ORTHO05D004060 1.6e-36 158.7 111 67.6
Sabra02G0176500 Salix brachista HOM05D003294 ORTHO05D004060 2.0e-36 158.3 121 62.8
CAN.G484.118 Capsicum annuum HOM05D003294 ORTHO05D004060 2.7e-36 157.9 122 62.3
Rhsim09G0035700 Rhododendron simsii HOM05D003294 ORTHO05D004060 4.6e-36 157.1 120 61.7
Dinv44225 Davidia involucrata HOM05D003294 ORTHO05D004060 1.3e-35 155.6 102 70.6
PGSC0003DMG400021603 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.3e-35 155.6 122 61.5
CAN.G710.61 Capsicum annuum HOM05D003294 ORTHO05D004060 2.3e-35 154.8 122 61.5
Duzib151G0954 Durio zibethinus HOM05D003294 ORTHO05D004060 2.3e-35 154.8 120 63.3
Atru.chr3.1652 Acer truncatum HOM05D003294 ORTHO05D004060 3.9e-35 154.1 121 61.2
CAN.G484.117 Capsicum annuum HOM05D003294 ORTHO05D004060 3.9e-35 154.1 122 60.7
CAN.G484.121 Capsicum annuum HOM05D003294 ORTHO05D004060 3.9e-35 154.1 122 61.5
Manes.11G114666 Manihot esculenta HOM05D003294 ORTHO05D004060 3.9e-35 154.1 117 64.1
Peaxi162Scf00286g00022 Petunia axillaris HOM05D003294 ORTHO05D004060 3.9e-35 154.1 120 60.8
Sopen09g036430 Solanum pennellii HOM05D003294 ORTHO05D004060 3.9e-35 154.1 122 61.5
PGSC0003DMG400004676 Solanum tuberosum HOM05D003294 ORTHO05D004060 5.0e-35 153.7 122 60.7
Cfa015791 Carpinus fangiana HOM05D003294 ORTHO05D004060 6.6e-35 153.3 126 65.9
Sopen12g033510 Solanum pennellii HOM05D003294 ORTHO05D004060 6.6e-35 153.3 122 59.8
PGSC0003DMG400004675 Solanum tuberosum HOM05D003294 ORTHO05D004060 6.6e-35 153.3 142 54.9
Aqoxy2G04082 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 1.1e-34 152.5 121 60.3
Nitab4.5_0000383g0230 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.5e-34 152.1 122 60.7
PGSC0003DMG400002364 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.5e-34 152.1 125 61.6
Nitab4.5_0011287g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.9e-34 151.8 116 61.2
CAN.G484.120 Capsicum annuum HOM05D003294 ORTHO05D004060 2.5e-34 151.4 100 70.0
Nitab4.5_0004568g0020 Nicotiana tabacum HOM05D003294 ORTHO05D004060 3.3e-34 151.0 121 59.5
Peaxi162Scf00323g00616 Petunia axillaris HOM05D003294 ORTHO05D004060 3.3e-34 151.0 121 59.5
ClCG07G016610 Citrullus lanatus HOM05D003294 ORTHO05D004060 4.3e-34 150.6 121 60.3
PGR142G3893 Punica granatum HOM05D003294 ORTHO05D004060 4.3e-34 150.6 123 61.0
Haze_00702 Corylus avellana HOM05D003294 ORTHO05D004060 7.3e-34 149.8 103 69.9
Sopen12g018920 Solanum pennellii HOM05D003294 ORTHO05D004060 7.3e-34 149.8 122 60.7
MBI11_g02538_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.2e-33 149.1 124 58.1
Oeu006702.1 Olea europaea HOM05D003294 ORTHO05D004060 1.2e-33 149.1 125 59.2
Solyc12g150132.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 1.2e-33 149.1 125 58.4
Sopen12g033540 Solanum pennellii HOM05D003294 ORTHO05D004060 1.2e-33 149.1 122 59.8
Peaxi162Scf00378g00826 Petunia axillaris HOM05D003294 ORTHO05D004060 1.6e-33 148.7 122 59.8
Peaxi162Scf00378g00827 Petunia axillaris HOM05D003294 ORTHO05D004060 1.6e-33 148.7 122 59.8
Peaxi162Scf00378g00828 Petunia axillaris HOM05D003294 ORTHO05D004060 1.6e-33 148.7 122 59.8
Peaxi162Scf00323g00521 Petunia axillaris HOM05D003294 ORTHO05D004060 2.1e-33 148.3 122 59.8
QL10p046489 Quercus lobata HOM05D003294 ORTHO05D004060 2.8e-33 147.9 100 66.0
TAR365G0590 Trochodendron aralioides HOM05D003294 ORTHO05D004060 3.6e-33 147.5 125 57.6
Actinidia17219 Actinidia chinensis HOM05D003294 ORTHO05D004060 4.7e-33 147.1 125 57.6
Lj6C64T13 Lonicera japonica HOM05D003294 ORTHO05D004060 6.2e-33 146.7 100 66.0
Thecc.04G182000 Theobroma cacao HOM05D003294 ORTHO05D004060 6.2e-33 146.7 125 59.2
Solyc12g150131.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 8.0e-33 146.4 124 58.9
Sed0006652 Sechium edule HOM05D003294 ORTHO05D004060 1.0e-32 146.0 100 64.0
Actinidia35892 Actinidia chinensis HOM05D003294 ORTHO05D004060 1.4e-32 145.6 125 56.8
CsaV3_4G003720 Cucumis sativus L. HOM05D003294 ORTHO05D004060 1.4e-32 145.6 122 59.8
Nitab4.5_0001049g0140 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.4e-32 145.6 115 60.0
C03p28650 Brassica napus HOM05D003294 ORTHO05D004060 1.8e-32 145.2 119 57.1
BolC3t15227H Brassica oleracea HOM05D003294 ORTHO05D004060 1.8e-32 145.2 119 57.1
Sed0017100 Sechium edule HOM05D003294 ORTHO05D004060 1.8e-32 145.2 121 58.7
Duzib268G0989 Durio zibethinus HOM05D003294 ORTHO05D004060 3.1e-32 144.4 124 60.5
THA.LOC104802293 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 3.1e-32 144.4 125 53.6
CSS0007766 Camellia sinensis var. sinensis HOM05D003294 ORTHO05D004060 4.0e-32 144.1 125 56.8
CiPaw.01G105500 Carya illinoinensis HOM05D003294 ORTHO05D004060 4.0e-32 144.1 127 63.0
MELO3C000009.2 Cucumis melo HOM05D000068 ORTHO05D000084 4.0e-32 144.1 122 59.0
CARHR169650 Cardamine hirsuta HOM05D003294 ORTHO05D004060 5.2e-32 143.7 111 60.4
Sopen12g033500 Solanum pennellii HOM05D003294 ORTHO05D004060 5.2e-32 143.7 119 59.7
Solyc12g098780.2 Solanum lycopersicum HOM05D003294 ORTHO05D004060 8.9e-32 142.9 125 58.4
BraA09t40598Z Brassica rapa HOM05D003294 ORTHO05D004060 1.2e-31 142.5 125 54.4
Sopen12g033530 Solanum pennellii HOM05D003294 ORTHO05D004060 1.2e-31 142.5 125 57.6
Lj6A66G18 Lonicera japonica HOM05D003294 ORTHO05D004060 1.5e-31 142.1 125 57.6
Lju521A1G13 Lonicera japonica HOM05D003294 ORTHO05D004060 1.5e-31 142.1 125 57.6
Sc10g0006170 Simmondsia chinensis HOM05D003294 ORTHO05D004060 1.5e-31 142.1 126 56.3
Potri.002G231250 Populus trichocarpa HOM05D003294 ORTHO05D004060 2.0e-31 141.7 125 56.0
DCAR_023908 Daucus carota HOM05D003294 ORTHO05D004060 2.6e-31 141.4 126 56.3
Migut.G00806 Erythranthe guttata HOM05D003294 ORTHO05D004060 4.4e-31 140.6 133 57.9
Gorai.005G018000 Gossypium raimondii HOM05D003294 ORTHO05D004060 4.4e-31 140.6 129 53.5
Potri.014G151101 Populus trichocarpa HOM05D003294 ORTHO05D004060 4.4e-31 140.6 123 56.9
Actinidia35893 Actinidia chinensis HOM05D003294 ORTHO05D004060 5.8e-31 140.2 125 55.2
BcaC07g40319 Brassica carinata HOM05D003294 ORTHO05D004060 5.8e-31 140.2 125 53.6
A03p24060 Brassica napus HOM05D003294 ORTHO05D004060 5.8e-31 140.2 125 53.6
C08p34360 Brassica napus HOM05D003294 ORTHO05D004060 5.8e-31 140.2 125 53.6
BraA03t11617Z Brassica rapa HOM05D003294 ORTHO05D004060 5.8e-31 140.2 125 53.6
Gohir.D09G203900 Gossypium hirsutum HOM05D003294 ORTHO05D004060 5.8e-31 140.2 99 65.7
Gorai.006G227800 Gossypium raimondii HOM05D003294 ORTHO05D004060 5.8e-31 140.2 99 65.7
THA.LOC104803514 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 5.8e-31 140.2 125 53.6
FAN17G2242 Fragaria x ananassa HOM05D003294 ORTHO05D004060 7.5e-31 139.8 123 56.9
Sp4g25280 Schrenkiella parvula HOM05D003294 ORTHO05D004060 7.5e-31 139.8 125 52.8
SpUn0921_0020 Schrenkiella parvula HOM05D003294 ORTHO05D004060 7.5e-31 139.8 125 52.8
Sopen12g033520 Solanum pennellii HOM05D003294 ORTHO05D004060 7.5e-31 139.8 125 57.6
SGA_v2.0_scaffold406G51043 Striga asiatica HOM05D003294 ORTHO05D004060 7.5e-31 139.8 126 55.6
A04p32470 Brassica napus HOM05D003294 ORTHO05D004060 9.8e-31 139.4 125 53.6
MBI08_g05500_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 9.8e-31 139.4 112 58.9
MBI08_g20550_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.3e-30 139.0 120 57.5
BolC4t22061H Brassica oleracea HOM05D003294 ORTHO05D004060 1.7e-30 138.7 125 53.6
BolC8t51035H Brassica oleracea HOM05D003294 ORTHO05D004060 1.7e-30 138.7 125 52.8
C04p70160 Brassica napus HOM05D003294 ORTHO05D004060 2.2e-30 138.3 125 52.8
BolC4t28519H Brassica oleracea HOM05D003294 ORTHO05D004060 2.2e-30 138.3 125 52.8
A09p51590 Brassica napus HOM05D003294 ORTHO05D004060 3.7e-30 137.5 124 53.2
Gohir.D02G014550 Gossypium hirsutum HOM05D003294 ORTHO05D004060 3.7e-30 137.5 129 52.7
VMungo1383G0624 Vigna mungo HOM05D003294 ORTHO05D004060 3.7e-30 137.5 122 58.2
SpUn1318_0010 Schrenkiella parvula HOM05D003294 ORTHO05D004060 8.3e-30 136.3 110 58.2
FvH4_4g11660 Fragaria vesca HOM05D003294 ORTHO05D004060 1.1e-29 136.0 123 56.1
FAN12G0818 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.1e-29 136.0 123 56.1
FAN12G1447 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.1e-29 136.0 123 56.1
Gohir.A02G013500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 1.1e-29 136.0 129 51.9
MBI08_g05488_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.1e-29 136.0 120 55.0
TWI15G0198 Tripterygium wilfordii HOM05D003294 ORTHO05D004060 1.1e-29 136.0 111 57.7
BraA04t18713Z Brassica rapa HOM05D003294 ORTHO05D004060 1.4e-29 135.6 120 54.2
Nn7g38030 Nelumbo nucifera HOM05D003294 ORTHO05D004060 1.9e-29 135.2 120 53.3
BraA05t19350Z Brassica rapa HOM05D003294 ORTHO05D004060 2.4e-29 134.8 120 54.2
MBI08_g05491_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 2.4e-29 134.8 104 58.7
Aa31LG1G24960 Aethionema arabicum HOM05D003294 ORTHO05D004060 3.2e-29 134.4 125 52.0
CARHR138220 Cardamine hirsuta HOM05D003294 ORTHO05D004060 5.4e-29 133.7 125 52.0
Nitab4.5_0020026g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 5.4e-29 133.7 98 63.3
Carub.0555s0001 Capsella rubella HOM05D003294 ORTHO05D004060 7.0e-29 133.3 125 52.0
MSTRG.24590 Avicennia marina HOM05D003294 ORTHO05D004060 1.6e-28 132.1 126 53.2
HanXRQChr14g0437091 Helianthus annuus HOM05D003294 ORTHO05D004060 2.0e-28 131.7 124 53.2
Gohir.A09G210500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 2.7e-28 131.3 99 63.6
FAN22G1863 Fragaria x ananassa HOM05D003294 ORTHO05D004060 6.0e-28 130.2 113 56.6
BcaB01g03408 Brassica carinata HOM05D003294 ORTHO05D004060 1.0e-27 129.4 98 58.2
FAN07G0287 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.0e-27 129.4 114 57.0
Sabra14G0114500 Salix brachista HOM05D003294 ORTHO05D004060 1.7e-27 128.6 122 52.5
PSO017G7143 Papaver somniferum HOM05D003294 ORTHO05D004060 2.3e-27 128.3 121 50.4
TPR.G36208 Trifolium pratense HOM05D003294 ORTHO05D004060 2.3e-27 128.3 123 56.1
TPR.G40851 Trifolium pratense HOM05D003294 ORTHO05D004060 2.3e-27 128.3 123 55.3
arahy.Tifrunner.gnm1.ann1.XI0QBF Arachis hypogaea HOM05D003294 ORTHO05D004060 3.9e-27 127.5 123 51.2
PSO675G6401 Papaver somniferum HOM05D003294 ORTHO05D004060 5.0e-27 127.1 120 50.8
ATR0743G132 Amborella trichopoda HOM05D003294 ORTHO05D004060 6.6e-27 126.7 102 55.9
HanXRQChr03g0075661 Helianthus annuus HOM05D003294 ORTHO05D004060 6.6e-27 126.7 129 54.3
arahy.Tifrunner.gnm1.ann1.NU92WK Arachis hypogaea HOM05D003294 ORTHO05D004060 1.1e-26 125.9 122 51.6
HanXRQChr14g0437071 Helianthus annuus HOM05D003294 ORTHO05D004060 1.1e-26 125.9 122 51.6
Sabra14G0114900 Salix brachista HOM05D003294 ORTHO05D004060 1.5e-26 125.6 122 51.6
unitig_744.g24077 Utricularia gibba HOM05D003294 ORTHO05D004060 2.5e-26 124.8 115 52.2
ECA238G3164 Erigeron canadensis HOM05D003294 ORTHO05D004060 3.3e-26 124.4 124 52.4
Aa31LG10G13630 Aethionema arabicum HOM05D003294 ORTHO05D004060 1.2e-25 122.5 124 46.8
VMungo0720G0780 Vigna mungo HOM05D003294 ORTHO05D004060 1.4e-24 119.0 124 50.8
Phvul.008G003200 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 1.8e-24 118.6 112 54.5
arahy.Tifrunner.gnm1.ann1.3MFN7L Arachis hypogaea HOM05D003294 ORTHO05D004060 3.1e-24 117.9 105 59.0
Lsat_1_v5_gn_2_51640 Lactuca sativa HOM05D003294 ORTHO05D004060 5.2e-24 117.1 102 54.9
unitig_578.g16248 Utricularia gibba HOM05D003294 ORTHO05D004060 8.9e-24 116.3 106 50.0
Peaxi162Scf00323g00620 Petunia axillaris HOM05D003294 ORTHO05D004060 1.2e-23 115.9 80 66.2
Lsat_1_v5_gn_2_51341 Lactuca sativa HOM05D003294 ORTHO05D004060 2.0e-23 115.2 123 50.4
Ca_13008_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 3.4e-23 114.4 100 57.0
TPR.G6490 Trifolium pratense HOM05D003294 ORTHO05D004060 4.4e-23 114.0 121 52.1
arahy.Tifrunner.gnm1.ann1.F7AR35 Arachis hypogaea HOM05D003294 ORTHO05D004060 5.8e-23 113.6 133 51.1
arahy.Tifrunner.gnm1.ann1.U0YEJU Arachis hypogaea HOM05D003294 ORTHO05D004060 5.8e-23 113.6 133 51.1
Lj5g0001019 Lotus japonicus HOM05D003294 ORTHO05D004060 5.8e-23 113.6 117 48.7
Psat6g050240 Pisum sativum HOM05D003294 ORTHO05D004060 5.8e-23 113.6 122 51.6
Lsat_1_v5_gn_2_51461 Lactuca sativa HOM05D003294 ORTHO05D004060 7.5e-23 113.2 102 54.9
Lsat_1_v5_gn_2_50521 Lactuca sativa HOM05D003294 ORTHO05D004060 9.8e-23 112.8 102 53.9
Medtr1g033130 Medicago truncatula HOM05D003294 ORTHO05D004060 1.3e-22 112.5 126 49.2
Medtr1g116947 Medicago truncatula HOM05D003294 ORTHO05D004060 1.3e-22 112.5 122 49.2
Medtr1g033100 Medicago truncatula HOM05D003294 ORTHO05D004060 1.7e-22 112.1 119 49.6
arahy.Tifrunner.gnm1.ann1.067A10 Arachis hypogaea HOM05D003294 ORTHO05D004060 2.9e-22 111.3 105 56.2
RcHm_v2.0_Chr4g0408821 Rosa chinensis HOM05D003294 ORTHO05D004060 3.7e-22 110.9 99 55.6
Phvul.007G084600 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 4.9e-22 110.5 115 53.0
PSO017G4822 Papaver somniferum HOM05D003294 ORTHO05D004060 6.4e-22 110.2 124 46.0
Phvul.007G002400 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 6.4e-22 110.2 122 48.4
PSO478G2289 Papaver somniferum HOM05D003294 ORTHO05D004060 8.3e-22 109.8 121 48.8
Psat0s2492g0040 Pisum sativum HOM05D003294 ORTHO05D004060 8.3e-22 109.8 122 48.4
vmacro00571 Vaccinium macrocarpon HOM05D003294 ORTHO05D004060 1.1e-21 109.4 68 73.5
arahy.Tifrunner.gnm1.ann1.MNWX4W Arachis hypogaea HOM05D003294 ORTHO05D004060 1.4e-21 109.0 98 56.1
Medtr1g033080 Medicago truncatula HOM05D003294 ORTHO05D004060 1.4e-21 109.0 122 47.5
Glyma.20G247850 Glycine max HOM05D003294 ORTHO05D004060 1.9e-21 108.6 122 47.5
arahy.Tifrunner.gnm1.ann1.U55V76 Arachis hypogaea HOM05D003294 ORTHO05D004060 2.4e-21 108.2 98 56.1
Ca_13010_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 3.2e-21 107.8 101 52.5
SEGI_35656 Sequoiadendron giganteum HOM05D003294 ORTHO05D004060 3.2e-21 107.8 103 48.5
arahy.Tifrunner.gnm1.ann1.AM9QWL Arachis hypogaea HOM05D003294 ORTHO05D004060 7.1e-21 106.7 100 54.0
Lj2g0020269 Lotus japonicus HOM05D003294 ORTHO05D004060 1.2e-20 105.9 122 45.9
Ca_13009_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 2.7e-20 104.8 100 53.0
BcaC01g05257 Brassica carinata HOM05D003294 ORTHO05D004060 2.3e-19 101.7 77 57.1
Lj6g0023787 Lotus japonicus HOM05D003294 ORTHO05D004060 8.6e-19 99.8 111 45.0
Lalb_Chr02g0144471 Lupinus albus HOM05D003294 ORTHO05D004060 1.9e-18 98.6 122 43.4
Lalb_Chr21g0307691 Lupinus albus HOM05D003294 ORTHO05D004060 2.5e-18 98.2 99 49.5
Nitab4.5_0000978g0120 Nicotiana tabacum HOM05D003294 ORTHO05D004060 2.1e-17 95.1 70 60.0
Dinv22670 Davidia involucrata HOM05D003294 ORTHO05D004060 1.2e-15 89.4 122 44.3
Psat0s3952g0120 Pisum sativum HOM05D003294 ORTHO05D004060 3.4e-15 87.8 124 45.2
Os01g0899700 Oryza sativa ssp. japonica HOM05D003294 ORTHO05D004060 2.3e-11 75.1 106 38.7
SMO223G0034 Selaginella moellendorffii HOM05D003294 ORTHO05D004060 1.9e-10 72.0 123 41.5
Aqoxy1G02134 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 9.6e-10 69.7 48 62.5
Zm00001eb144520 Zea mays HOM05D003294 ORTHO05D004060 2.4e-08 65.1 133 35.3
MBI11_g33754_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 4.0e-08 64.3 104 41.3
Aqoxy7G03524 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 8.9e-08 63.2 79 41.8
Psat0s3952g0080 Pisum sativum HOM05D003294 ORTHO05D004060 1.2e-07 62.8 122 36.1
Solyc12g038700.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 1.5e-07 62.4 36 77.8
Lj2g0020959 Lotus japonicus HOM05D003294 ORTHO05D004060 4.9e-06 57.4 75 42.7


User provided reference genes

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