Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 0.0e+00 1076.2 573 100.0
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 7.2e-264 913.7 604 81.6
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.6e-260 902.5 580 83.1
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 4.2e-256 887.9 580 81.6
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 1.7e-252 875.9 576 79.5
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 2.0e-245 852.4 527 85.0
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 7.4e-245 850.5 556 80.6
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 9.7e-245 850.1 543 82.9
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 2.8e-244 848.6 586 78.2
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 6.3e-244 847.4 552 81.2
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.1e-243 846.7 525 84.6
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.1e-243 846.7 573 79.4
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 1.8e-243 845.9 547 82.3
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 1.8e-243 845.9 529 83.7
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 5.3e-243 844.3 532 82.9
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 5.3e-243 844.3 583 77.2
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 7.0e-243 844.0 531 83.8
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.6e-242 842.8 533 83.9
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 2.6e-242 842.0 574 79.4
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.5e-242 841.6 530 83.0
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 5.9e-242 840.9 520 84.6
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 5.9e-242 840.9 571 78.6
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.7e-241 839.3 520 84.4
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 1.7e-241 839.3 526 82.5
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 1.7e-241 839.3 516 84.9
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 2.9e-241 838.6 516 84.5
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 5.0e-241 837.8 563 78.3
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 8.5e-241 837.0 516 84.3
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.5e-240 835.5 523 83.0
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 2.5e-240 835.5 525 84.6
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 5.5e-240 834.3 522 83.1
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 7.2e-240 833.9 584 77.1
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.2e-239 833.2 527 82.5
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.6e-239 832.8 526 82.5
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 2.1e-239 832.4 566 77.7
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 2.7e-239 832.0 502 86.7
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 3.6e-239 831.6 567 77.6
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.6e-239 831.6 561 79.9
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 8.0e-239 830.5 526 81.9
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 1.4e-238 829.7 528 81.8
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.8e-238 829.3 572 77.6
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 1.8e-238 829.3 572 77.6
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 4.0e-238 828.2 544 80.9
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 8.8e-238 827.0 534 81.5
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 8.8e-238 827.0 491 87.4
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 8.8e-238 827.0 528 81.2
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 1.2e-237 826.6 527 81.4
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 3.3e-237 825.1 528 83.0
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 3.3e-237 825.1 547 79.5
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 3.3e-237 825.1 526 82.3
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 4.4e-237 824.7 533 82.0
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 4.4e-237 824.7 543 79.7
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 4.4e-237 824.7 543 79.7
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 4.4e-237 824.7 534 80.9
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 5.7e-237 824.3 501 85.0
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 9.7e-237 823.5 547 79.5
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.3e-236 823.2 540 79.8
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 1.3e-236 823.2 552 79.0
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 1.7e-236 822.8 542 80.8
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 1.7e-236 822.8 514 84.0
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 4.8e-236 821.2 530 81.7
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 4.8e-236 821.2 527 80.6
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 6.3e-236 820.8 539 81.6
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 6.3e-236 820.8 522 82.0
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 6.3e-236 820.8 524 81.7
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 8.2e-236 820.5 576 75.9
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 1.4e-235 819.7 531 80.2
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.8e-235 819.3 560 79.1
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 4.1e-235 818.1 524 81.5
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 4.1e-235 818.1 524 81.5
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.7e-234 815.5 565 76.8
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 5.9e-234 814.3 554 78.3
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 5.9e-234 814.3 484 87.8
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 2.2e-233 812.4 526 80.2
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 2.2e-233 812.4 567 76.7
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 5.0e-233 811.2 544 78.7
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.1e-232 810.1 527 79.7
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 1.5e-232 809.7 531 80.0
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 1.9e-232 809.3 568 78.2
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.9e-232 809.3 559 76.9
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 4.2e-232 808.1 543 78.3
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 7.2e-232 807.4 543 78.1
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 2.7e-231 805.4 525 80.8
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 2.7e-231 805.4 527 80.3
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 3.6e-231 805.1 575 74.1
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 8.0e-231 803.9 528 80.5
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 1.0e-230 803.5 511 82.6
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 3.0e-230 802.0 552 77.2
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 5.2e-230 801.2 530 79.2
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 2.0e-229 799.3 544 78.1
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 4.4e-229 798.1 556 77.2
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 9.8e-229 797.0 511 81.6
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 4.8e-228 794.7 502 82.5
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 8.3e-228 793.9 525 80.4
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 2.7e-226 788.9 556 76.1
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.0e-225 786.9 531 79.3
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 9.8e-221 770.4 560 74.6
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 2.2e-220 769.2 502 80.1
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 6.8e-214 747.7 582 71.0
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 3.4e-213 745.3 467 82.7
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 6.4e-212 741.1 493 79.7
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 9.2e-211 737.3 544 72.6
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 2.0e-210 736.1 432 88.2
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 3.6e-207 725.3 458 81.4
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 7.5e-205 717.6 721 59.2
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 1.1e-203 713.8 483 77.4
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 4.1e-203 711.8 435 84.1
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 5.4e-203 711.4 550 69.3
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.6e-202 709.9 598 65.4
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 4.6e-202 708.4 435 85.7
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 1.2e-199 700.3 531 72.3
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 4.7e-199 698.4 435 82.1
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.3e-193 679.5 498 70.5
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.9e-193 678.7 585 63.8
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 2.7e-186 656.0 392 87.5
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 7.6e-181 637.9 394 83.2
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 9.9e-181 637.5 436 75.9
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 4.2e-179 632.1 406 80.8
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.1e-178 629.8 429 75.8
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 7.8e-178 627.9 438 73.7
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 5.1e-177 625.2 393 83.2
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 8.1e-175 617.8 441 75.3
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 3.1e-174 615.9 419 76.1
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 3.4e-173 612.5 416 75.2
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 5.8e-173 611.7 425 72.9
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.1e-163 580.9 547 61.1
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 5.1e-161 572.0 468 67.9
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.2e-149 534.3 539 59.4
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 6.7e-145 518.5 443 67.3
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 3.3e-144 516.2 313 84.0
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 5.7e-144 515.4 373 75.1
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.0e-137 494.6 452 63.7
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 6.3e-135 485.3 354 71.5
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.8e-132 476.1 299 81.6
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 9.7e-128 461.5 350 72.9
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.0e-121 441.4 525 47.4
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 2.0e-120 437.2 277 81.9
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 2.0e-117 427.2 255 87.1
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 5.9e-117 425.6 285 79.3
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 9.5e-83 312.0 503 42.9
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.1e-78 298.5 213 71.4
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 3.0e-76 290.4 521 40.9
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 4.7e-74 283.1 186 76.9
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 3.0e-68 263.8 197 73.1
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 4.3e-67 260.0 264 56.4
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 7.1e-62 242.7 188 73.4
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 9.3e-54 215.7 142 79.6
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 9.3e-54 215.7 192 65.1
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.8e-52 211.5 170 64.7
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 3.9e-52 210.3 193 58.5
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 3.8e-47 193.7 118 81.4
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 5.1e-44 183.3 126 73.8
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 5.0e-31 140.2 109 72.5
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 6.5e-31 139.8 92 72.8
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.1e-30 139.0 76 93.4
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 2.2e-26 124.8 104 67.3
Hund13357 Selenicereus undatus HOM05D000949 ORTHO05D005248 4.8e-26 123.6 81 82.7
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 1.8e-25 121.7 78 80.8
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 3.4e-24 117.5 90 65.6
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 4.5e-24 117.1 69 81.2
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 1.6e-21 108.6 79 70.9
Hund16205 Selenicereus undatus HOM05D000949 ORTHO05D005248 5.1e-20 103.6 81 72.8
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 8.8e-20 102.8 67 80.6
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 7.4e-19 99.8 61 82.0
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 4.2e-14 84.0 53 79.2
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 1.8e-12 78.6 141 36.9
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 8.8e-12 76.3 58 65.5
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 9.1e-09 66.2 39 89.7
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 1.2e-08 65.9 62 59.7
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 4.5e-08 63.9 93 46.2
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 1.0e-07 62.8 78 48.7
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 1.7e-07 62.0 54 57.4


User provided reference genes

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