Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06253 Selenicereus undatus HOM05D006691 ORTHO05D007620 2.2e-45 185.3 93 100.0
Nitab4.5_0007454g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.8e-16 88.6 93 53.8
Dinv23490 Davidia involucrata HOM05D006691 ORTHO05D007620 6.2e-16 87.4 95 54.7
Nitab4.5_0013456g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 8.1e-16 87.0 94 52.1
Potri.009G119900 Populus trichocarpa HOM05D006691 ORTHO05D007620 2.4e-15 85.5 95 50.5
QL11p045203 Quercus lobata HOM05D006691 ORTHO05D007620 5.2e-15 84.3 93 49.5
Lj1g0004010 Lotus japonicus HOM05D006691 ORTHO05D007620 1.2e-14 83.2 94 50.0
FvH4_2g09570 Fragaria vesca HOM05D006691 ORTHO05D007620 1.5e-14 82.8 96 51.0
FAN24G2625 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.5e-14 82.8 96 51.0
FAN15G0999 Fragaria x ananassa HOM05D006691 ORTHO05D007620 2.0e-14 82.4 96 51.0
FAN20G2766 Fragaria x ananassa HOM05D006691 ORTHO05D007620 2.0e-14 82.4 96 50.0
FAN27G2049 Fragaria x ananassa HOM05D006691 ORTHO05D007620 2.0e-14 82.4 96 51.0
Nitab4.5_0003234g0120 Nicotiana tabacum HOM05D006691 ORTHO05D007620 3.4e-14 81.6 93 50.5
Manes.11G091700 Manihot esculenta HOM05D006691 ORTHO05D007620 5.8e-14 80.9 92 52.2
Dinv42040 Davidia involucrata HOM05D006691 ORTHO05D007620 7.6e-14 80.5 95 48.4
Prupe.8G091200 Prunus persica HOM05D006691 ORTHO05D007620 7.6e-14 80.5 95 48.4
Nitab4.5_0001413g0050 Nicotiana tabacum HOM05D006691 ORTHO05D007620 9.9e-14 80.1 94 48.9
Medtr8g037800 Medicago truncatula HOM05D006691 ORTHO05D007620 1.7e-13 79.3 94 46.8
Cc00_g15110 Coffea canephora HOM05D006691 ORTHO05D007620 2.2e-13 79.0 94 48.9
MD05G1061400 Malus domestica HOM05D006691 ORTHO05D007620 2.2e-13 79.0 93 44.1
Peaxi162Scf00016g00429 Petunia axillaris HOM05D006691 ORTHO05D007620 2.2e-13 79.0 96 50.0
Lalb_Chr01g0007961 Lupinus albus HOM05D006691 ORTHO05D007620 2.9e-13 78.6 94 48.9
RcHm_v2.0_Chr6g0265861 Rosa chinensis HOM05D006691 ORTHO05D007620 2.9e-13 78.6 96 47.9
Psat4g192840 Pisum sativum HOM05D006691 ORTHO05D007620 4.9e-13 77.8 94 47.9
TAR628G0615 Trochodendron aralioides HOM05D006691 ORTHO05D007620 4.9e-13 77.8 94 48.9
CAN.G1544.5 Capsicum annuum HOM05D006691 ORTHO05D007620 6.4e-13 77.4 93 51.6
Phvul.011G210100 Phaseolus vulgaris HOM05D006691 ORTHO05D007620 6.4e-13 77.4 91 48.4
Ciclev10030122m.g Citrus clementina HOM05D006691 ORTHO05D007620 8.4e-13 77.0 93 45.2
MD10G1069300 Malus domestica HOM05D006691 ORTHO05D007620 8.4e-13 77.0 95 48.4
Glyma.13G201100 Glycine max HOM05D006691 ORTHO05D007620 1.1e-12 76.6 90 45.6
Manes.04G087299 Manihot esculenta HOM05D006691 ORTHO05D007620 1.4e-12 76.3 91 49.5
Lj3g0013236 Lotus japonicus HOM05D006691 ORTHO05D007620 1.9e-12 75.9 92 51.1
Eucgr.I01291 Eucalyptus grandis HOM05D006691 ORTHO05D007620 2.4e-12 75.5 95 43.2
Solyc01g109895.1 Solanum lycopersicum HOM05D006691 ORTHO05D007620 2.4e-12 75.5 94 47.9
PGSC0003DMG400030948 Solanum tuberosum HOM05D006691 ORTHO05D007620 2.4e-12 75.5 89 50.6
COL.COLO4_25981 Corchorus olitorius HOM05D006691 ORTHO05D007620 3.2e-12 75.1 95 51.6
Thecc.02G080700 Theobroma cacao HOM05D006691 ORTHO05D007620 4.2e-12 74.7 94 48.9
TPR.G1848 Trifolium pratense HOM05D006691 ORTHO05D007620 7.1e-12 73.9 94 44.7
Duzib248G1522 Durio zibethinus HOM05D006691 ORTHO05D007620 1.2e-11 73.2 88 48.9
Sopen01g052090 Solanum pennellii HOM05D006691 ORTHO05D007620 1.2e-11 73.2 91 48.4
Gohir.A03G196700 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.6e-11 72.8 88 46.6
Actinidia00546 Actinidia chinensis HOM05D006691 ORTHO05D007620 2.7e-11 72.0 94 51.1
Gorai.005G245800 Gossypium raimondii HOM05D006691 ORTHO05D007620 2.7e-11 72.0 88 45.5
GSVIVG01023821001 Vitis vinifera HOM05D006691 ORTHO05D007620 2.7e-11 72.0 99 48.5
Hma1.2p1_0066F.1_g036140 Hydrangea macrophylla HOM05D006691 ORTHO05D007620 3.5e-11 71.6 95 45.3
CiPaw.06G132900 Carya illinoinensis HOM05D006691 ORTHO05D007620 4.6e-11 71.2 95 45.3
SalBow6G5689 Salvia bowleyana HOM05D006691 ORTHO05D007620 7.8e-11 70.5 89 47.2
Gohir.D02G217900 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.0e-10 70.1 88 44.3
Gohir.D13G030800 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.0e-10 70.1 88 46.6
Gorai.013G035000 Gossypium raimondii HOM05D006691 ORTHO05D007620 1.0e-10 70.1 88 46.6
Aqoxy5G01556 Aquilegia oxysepala HOM05D006691 ORTHO05D007620 2.3e-10 68.9 99 48.5
Sc18g0005100 Simmondsia chinensis HOM05D006691 ORTHO05D007620 3.0e-10 68.6 96 39.6
TWI79G1416 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 3.0e-10 68.6 94 46.8
Duzib132G0715 Durio zibethinus HOM05D006691 ORTHO05D007620 5.1e-10 67.8 88 48.9
Gohir.A13G032600 Gossypium hirsutum HOM05D006691 ORTHO05D007620 6.6e-10 67.4 88 45.5
MELO3C023320.2 Cucumis melo HOM05D006691 ORTHO05D007620 8.7e-10 67.0 85 49.4
PSO675G5127 Papaver somniferum HOM05D006691 ORTHO05D007620 8.7e-10 67.0 102 49.0
TWI31G1476 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 8.7e-10 67.0 94 44.7
PSO591G0314 Papaver somniferum HOM05D006691 ORTHO05D007620 1.1e-09 66.6 102 50.0
Ah.01g019150 Amaranthus hybridus HOM05D001345 ORTHO05D001190 1.5e-09 66.2 74 48.6
ClCG11G004170 Citrullus lanatus HOM05D006691 ORTHO05D007620 1.5e-09 66.2 85 47.1
Glyma.12G235600 Glycine max HOM05D006691 ORTHO05D007620 1.9e-09 65.9 38 76.3
Migut.B00211 Erythranthe guttata HOM05D006691 ORTHO05D007620 3.3e-09 65.1 96 42.7
THA.LOC104819621 Tarenaya hassleriana HOM05D006691 ORTHO05D007620 3.3e-09 65.1 94 41.5
CANSAT11G0932 Cannabis sativa HOM05D006691 ORTHO05D007620 4.3e-09 64.7 91 46.2
CsaV3_2G015000 Cucumis sativus L. HOM05D006691 ORTHO05D007620 4.3e-09 64.7 85 47.1
HanXRQChr16g0505401 Helianthus annuus HOM05D006691 ORTHO05D007620 7.3e-09 63.9 96 44.8
Peaxi162Scf00684g00234 Petunia axillaris HOM05D006691 ORTHO05D007620 7.3e-09 63.9 93 43.0
arahy.Tifrunner.gnm1.ann1.43WB82 Arachis hypogaea HOM05D006691 ORTHO05D007620 1.6e-08 62.8 94 43.6
CSS0036321 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 2.1e-08 62.4 93 41.9
arahy.Tifrunner.gnm1.ann1.D742FH Arachis hypogaea HOM05D006691 ORTHO05D007620 2.8e-08 62.0 45 64.4
arahy.Tifrunner.gnm1.ann1.GKZX65 Arachis hypogaea HOM05D006691 ORTHO05D007620 2.8e-08 62.0 103 39.8
CiPaw.05G069300 Carya illinoinensis HOM05D006691 ORTHO05D007620 3.6e-08 61.6 37 70.3
CiPaw.05G069400 Carya illinoinensis HOM05D006691 ORTHO05D007620 3.6e-08 61.6 37 70.3
Sed0023451 Sechium edule HOM05D006691 ORTHO05D007620 6.2e-08 60.8 88 46.6
MBI16_g36843_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 8.1e-08 60.5 95 41.1
Rhsim05G0071400 Rhododendron simsii HOM05D006691 ORTHO05D007620 8.1e-08 60.5 90 43.3
CSS0004191 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 1.1e-07 60.1 93 38.7
DCAR_001560 Daucus carota HOM05D006691 ORTHO05D007620 1.1e-07 60.1 93 37.6
AT2G16385 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 1.8e-07 59.3 94 39.4
DCAR_004781 Daucus carota HOM05D006691 ORTHO05D007620 1.8e-07 59.3 46 54.3
CiPaw.05G069100 Carya illinoinensis HOM05D006691 ORTHO05D007620 2.4e-07 58.9 37 67.6
arahy.Tifrunner.gnm1.ann1.JP7MPK Arachis hypogaea HOM05D006691 ORTHO05D007620 4.0e-07 58.2 95 38.9
Lsat_1_v5_gn_7_91560 Lactuca sativa HOM05D006691 ORTHO05D007620 5.3e-07 57.8 92 40.2
Eucgr.G01694 Eucalyptus grandis HOM05D006691 ORTHO05D007620 6.9e-07 57.4 95 37.9
HanXRQChr04g0127791 Helianthus annuus HOM05D006691 ORTHO05D007620 6.9e-07 57.4 90 40.0
Os11g0323860 Oryza sativa ssp. japonica HOM05D035858 ORTHO05D007620 6.9e-07 57.4 90 43.3
Os11g0412484 Oryza sativa ssp. japonica HOM05D035858 ORTHO05D007620 6.9e-07 57.4 90 43.3
AL3G52540 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 1.2e-06 56.6 91 38.5
Zm00001eb333380 Zea mays HOM05D046811 ORTHO05D007620 1.2e-06 56.6 85 38.8
PGR042G3893 Punica granatum HOM05D006691 ORTHO05D007620 2.0e-06 55.8 82 40.2
Carub.0007s0568 Capsella rubella HOM05D006691 ORTHO05D007620 2.6e-06 55.5 87 35.6
MBI10_g00752_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 2.6e-06 55.5 48 54.2
Thhalv10026702m.g Eutrema salsugineum HOM05D006691 ORTHO05D007620 4.4e-06 54.7 88 36.4
Lalb_Chr03g0032901 Lupinus albus HOM05D006691 ORTHO05D007620 5.8e-06 54.3 37 62.2
A01p03880 Brassica napus HOM05D006691 ORTHO05D007620 7.6e-06 53.9 87 37.9
CSS0048821 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 7.6e-06 53.9 100 38.0
CARHR242800 Cardamine hirsuta HOM05D006691 ORTHO05D007620 7.6e-06 53.9 88 37.5
AL7G16600 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 9.9e-06 53.5 87 35.6
BcaNung00683 Brassica carinata HOM05D006691 ORTHO05D007620 9.9e-06 53.5 87 36.8
C01p04190 Brassica napus HOM05D006691 ORTHO05D007620 9.9e-06 53.5 87 36.8
BraA01t00375Z Brassica rapa HOM05D006691 ORTHO05D007620 9.9e-06 53.5 87 36.8


User provided reference genes

Program Settings