Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 0.0e+00 1448.7 710 100.0
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 5.5e-181 638.6 730 50.5
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 6.7e-179 631.7 730 50.7
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 2.2e-161 573.5 788 44.5
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 9.5e-149 531.6 763 44.3
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 6.9e-75 286.2 757 31.0
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 2.5e-72 277.7 750 31.6
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 2.7e-71 274.2 587 34.4
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 3.0e-70 270.8 568 35.2
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 5.1e-70 270.0 748 32.1
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 4.4e-69 266.9 774 29.5
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 7.4e-69 266.2 766 30.8
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 1.1e-67 262.3 762 29.9
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.8e-67 261.5 747 30.7
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 3.1e-67 260.8 780 29.7
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 7.7e-66 256.1 734 29.8
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 8.5e-65 252.7 765 29.7
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 1.1e-64 252.3 737 32.6
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 1.6e-63 248.4 526 34.0
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 3.6e-63 247.3 401 39.2
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 3.0e-62 244.2 486 36.4
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 3.9e-62 243.8 735 29.9
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 3.9e-62 243.8 729 29.1
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 2.0e-61 241.5 522 36.8
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 1.4e-59 235.3 499 35.7
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 9.1e-59 232.6 534 34.3
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.0e-57 229.2 462 37.4
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 2.9e-57 227.6 525 33.5
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 8.5e-57 226.1 759 28.7
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 2.7e-55 221.1 498 34.5
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 1.4e-54 218.8 762 28.7
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 8.8e-54 216.1 524 32.3
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 2.6e-53 214.5 768 28.9
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 4.4e-53 213.8 526 33.7
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 5.7e-53 213.4 504 34.7
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 5.7e-53 213.4 706 30.2
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.3e-52 212.2 513 33.5
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 2.4e-51 208.0 514 34.6
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 1.2e-50 205.7 423 38.1
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 2.5e-48 198.0 731 28.2
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 4.2e-48 197.2 744 28.2
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 9.4e-48 196.1 736 27.9
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.2e-47 195.7 754 28.5
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 1.2e-47 195.7 501 33.7
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 1.8e-46 191.8 506 34.0
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 4.4e-45 187.2 505 33.3
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 7.5e-45 186.4 405 32.8
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 9.8e-45 186.0 412 36.9
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 9.8e-45 186.0 734 26.7
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.3e-44 185.7 439 33.5
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.7e-44 185.3 486 33.7
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.7e-44 184.1 533 31.7
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 6.3e-44 183.3 481 32.4
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 6.3e-44 183.3 762 28.5
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.2e-42 179.1 415 33.7
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 2.0e-42 178.3 531 30.9
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 1.0e-41 176.0 501 31.7
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.5e-40 172.2 489 31.1
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 3.3e-40 171.0 428 34.6
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 4.2e-40 170.6 513 30.8
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 2.8e-39 167.9 418 31.8
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 1.4e-38 165.6 490 30.6
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 4.0e-38 164.1 402 32.6
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 6.8e-38 163.3 417 32.1
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.5e-37 162.2 423 33.1
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 3.1e-35 154.5 539 28.9
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 5.9e-34 150.2 436 31.9
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 5.9e-34 150.2 410 33.7
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 5.9e-34 150.2 394 31.0
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 1.0e-33 149.4 419 31.5
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 2.3e-33 148.3 411 31.9
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 5.0e-33 147.1 495 32.3
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 8.6e-33 146.4 412 34.0
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 1.1e-32 146.0 419 31.3
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 4.3e-32 144.1 502 29.9
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 7.3e-32 143.3 413 31.2
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 1.6e-31 142.1 492 28.7
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 3.6e-31 141.0 326 34.7
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 8.0e-31 139.8 413 33.2
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 8.0e-31 139.8 501 30.5
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.4e-30 139.0 231 38.5
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 3.1e-30 137.9 497 26.8
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 5.2e-30 137.1 472 30.1
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 1.3e-28 132.5 485 28.5
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 2.0e-26 125.2 419 29.4
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 2.3e-25 121.7 515 28.0
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.5e-24 118.2 255 33.3
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 1.6e-23 115.5 258 36.4
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 2.1e-23 115.2 518 26.4
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 2.3e-22 111.7 485 26.4
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 1.5e-21 109.0 225 32.9
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 2.9e-20 104.8 238 33.6
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.6e-18 99.0 408 27.9
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 3.5e-18 97.8 352 27.3
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 3.5e-18 97.8 490 25.9
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 3.9e-17 94.4 330 29.7
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 4.3e-16 90.9 397 25.4
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 7.3e-16 90.1 335 27.8
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 1.2e-15 89.4 243 33.3
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.2e-15 89.4 102 42.2
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 1.6e-15 89.0 335 28.1
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 6.2e-15 87.0 236 34.3
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 1.1e-14 86.3 328 29.9
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 2.3e-14 85.1 225 30.7
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 3.1e-14 84.7 329 28.0
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 5.2e-14 84.0 314 29.6
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 2.6e-13 81.6 236 31.4
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 2.6e-13 81.6 236 31.4
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.3e-12 79.3 226 30.5
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 1.7e-12 79.0 236 31.4
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 2.2e-12 78.6 401 25.7
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 2.9e-12 78.2 299 28.1
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 2.9e-12 78.2 299 28.1
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 3.7e-12 77.8 477 25.6
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 8.3e-12 76.6 287 27.5
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 8.3e-12 76.6 287 27.5
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 4.1e-11 74.3 301 27.6
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 4.1e-11 74.3 301 27.6
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 4.1e-11 74.3 301 27.6
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 5.4e-11 73.9 326 27.0
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.6e-10 72.4 185 31.9
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.7e-09 68.9 394 24.6
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 1.9e-08 65.5 57 57.9
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 3.3e-08 64.7 181 30.9
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 7.3e-08 63.5 221 27.6
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 8.1e-07 60.1 74 44.6
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 8.1e-07 60.1 194 27.3
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 4.0e-06 57.8 100 35.0
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 6.8e-06 57.0 230 27.4
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 6.8e-06 57.0 230 27.4


User provided reference genes

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