Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 7.0e-133 477.2 234 100.0
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 6.8e-96 354.4 234 72.2
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 2.9e-94 349.0 234 71.4
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 4.1e-93 345.1 221 73.8
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 5.4e-93 344.7 222 73.4
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 6.6e-91 337.8 227 71.4
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 3.1e-88 328.9 223 69.1
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 2.0e-87 326.2 219 68.9
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 2.0e-87 326.2 218 71.1
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 9.9e-87 323.9 220 69.5
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 1.7e-86 323.2 220 65.9
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 1.7e-86 323.2 234 65.4
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 2.2e-86 322.8 223 67.7
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 8.4e-86 320.9 220 68.2
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 8.4e-86 320.9 222 66.2
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 1.1e-85 320.5 220 66.8
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 1.1e-85 320.5 220 68.6
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 1.9e-85 319.7 222 68.0
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 3.2e-85 318.9 220 67.3
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 4.2e-85 318.5 224 67.0
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 9.3e-85 317.4 221 68.3
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 1.2e-84 317.0 220 68.2
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 2.1e-84 316.2 220 67.3
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 4.6e-84 315.1 220 65.5
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 4.6e-84 315.1 220 65.9
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 1.0e-83 313.9 226 65.0
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 1.0e-83 313.9 222 66.7
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 1.0e-83 313.9 220 65.5
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 1.0e-83 313.9 220 66.4
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 1.3e-83 313.5 222 65.3
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 1.7e-83 313.2 220 67.7
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 3.0e-83 312.4 232 63.8
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 6.6e-83 311.2 216 66.2
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 6.6e-83 311.2 220 66.4
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 1.9e-82 309.7 220 67.7
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 1.9e-82 309.7 235 62.1
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 2.5e-82 309.3 216 66.2
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 4.3e-82 308.5 221 66.1
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 5.6e-82 308.1 222 64.0
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 7.3e-82 307.8 221 64.3
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 7.3e-82 307.8 224 62.9
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 9.6e-82 307.4 243 60.9
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 1.3e-81 307.0 221 64.3
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 2.1e-81 306.2 219 63.0
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.1e-81 306.2 219 63.0
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 3.6e-81 305.4 220 65.0
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 6.2e-81 304.7 224 62.5
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 1.8e-80 303.1 220 64.5
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.4e-80 302.8 219 62.1
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 2.4e-80 302.8 221 64.7
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 3.1e-80 302.4 222 64.9
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 3.1e-80 302.4 221 63.8
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 5.3e-80 301.6 223 63.2
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 6.9e-80 301.2 220 64.1
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 6.9e-80 301.2 220 64.1
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 6.9e-80 301.2 220 65.5
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 1.2e-79 300.4 216 64.4
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 1.5e-79 300.1 219 65.3
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.5e-79 300.1 219 62.6
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 1.5e-79 300.1 223 64.1
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 3.4e-79 298.9 219 63.0
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 3.4e-79 298.9 220 63.6
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 3.4e-79 298.9 221 63.8
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 4.5e-79 298.5 226 61.9
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 7.6e-79 297.7 223 63.7
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 9.9e-79 297.4 222 62.2
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 1.3e-78 297.0 225 63.1
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 1.3e-78 297.0 231 62.8
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 2.9e-78 295.8 226 63.3
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 3.8e-78 295.4 206 67.0
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 3.8e-78 295.4 223 63.2
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 4.9e-78 295.0 223 61.9
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 1.1e-77 293.9 221 62.4
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 6.0e-76 288.1 221 62.4
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 3.0e-75 285.8 224 60.3
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 9.6e-74 280.8 234 59.4
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 2.8e-73 279.3 221 60.6
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 1.8e-72 276.6 225 58.7
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.2e-71 273.9 239 57.3
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 3.8e-70 268.9 220 59.5
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.9e-70 268.5 239 56.5
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.9e-69 266.5 239 55.6
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 3.2e-69 265.8 235 57.4
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 3.2e-69 265.8 235 57.9
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 1.2e-68 263.8 243 51.9
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 5.6e-66 255.0 232 53.4
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 4.8e-65 251.9 221 57.9
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 7.1e-61 238.0 160 68.1
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 2.7e-60 236.1 158 68.4
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 4.6e-60 235.3 158 68.4
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 4.6e-60 235.3 225 53.3
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 8.7e-59 231.1 226 52.7
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 8.7e-59 231.1 227 52.9
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 1.9e-58 229.9 229 54.1
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 1.9e-58 229.9 168 64.3
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 3.3e-58 229.2 140 74.3
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 7.4e-58 228.0 169 62.7
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 1.6e-57 226.9 229 53.7
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 2.4e-56 223.0 170 62.4
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 4.1e-56 222.2 230 51.7
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 2.2e-54 216.5 158 63.9
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 4.6e-52 208.8 223 46.2
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 2.5e-50 203.0 170 57.6
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.6e-49 200.3 169 57.4
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.4e-48 197.2 169 56.8
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 5.0e-46 188.7 251 41.0
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 1.2e-44 184.1 114 70.2
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 4.6e-44 182.2 114 69.3
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 2.6e-42 176.4 143 58.7
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 1.4e-37 160.6 105 71.4
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 5.3e-32 142.1 114 61.4
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 4.5e-31 139.0 120 55.8
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 1.0e-30 137.9 220 36.4
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 1.0e-30 137.9 144 52.1
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 1.2e-28 131.0 146 48.6
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.3e-25 120.9 106 53.8
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 7.5e-18 95.1 68 66.2
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 1.2e-15 87.8 96 44.8
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 1.2e-15 87.8 96 44.8
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 1.2e-15 87.8 63 66.7
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 1.2e-15 87.8 63 66.7
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 2.2e-09 67.0 47 66.0
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 2.2e-09 67.0 230 24.8
Lj7A486G68 Lonicera japonica HOM05D002021 ORTHO05D002077 5.9e-07 58.9 207 28.0
SMO270G0094 Selaginella moellendorffii HOM05D003180 ORTHO05D003664 1.7e-06 57.4 170 28.8
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 2.3e-06 57.0 184 27.7
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 2.9e-06 56.6 184 27.7
Nn3g21177 Nelumbo nucifera HOM05D002021 ORTHO05D002077 5.0e-06 55.8 194 25.8
Eucgr.I00962 Eucalyptus grandis HOM05D003180 ORTHO05D003664 8.6e-06 55.1 175 29.1


User provided reference genes

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