Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06149 Selenicereus undatus HOM05D001994 ORTHO05D001954 2.0e-161 572.4 286 100.0
Ah.01g006810 Amaranthus hybridus HOM05D001994 ORTHO05D001954 1.2e-30 137.9 186 50.5
Hund00449 Selenicereus undatus HOM05D001994 ORTHO05D001954 2.5e-23 113.6 186 43.0
Duzib192G0880 Durio zibethinus HOM05D001994 ORTHO05D001954 3.2e-23 113.2 186 43.5
AUR62026987 Chenopodium quinoa HOM05D001994 ORTHO05D001954 4.2e-23 112.8 186 41.9
FAN05G2047 Fragaria x ananassa HOM05D001994 ORTHO05D001954 5.5e-23 112.5 186 41.9
Lalb_Chr25g0278961 Lupinus albus HOM05D001994 ORTHO05D001954 9.4e-23 111.7 186 42.5
FvH4_6g28830 Fragaria vesca HOM05D001994 ORTHO05D001954 1.2e-22 111.3 186 41.4
FAN14G3785 Fragaria x ananassa HOM05D001994 ORTHO05D001954 1.2e-22 111.3 186 41.4
COL.COLO4_26672 Corchorus olitorius HOM05D001994 ORTHO05D001954 1.6e-22 110.9 186 42.5
Lsat_1_v5_gn_6_19560 Lactuca sativa HOM05D001994 ORTHO05D001954 1.6e-22 110.9 186 43.0
Sc12g0008500 Simmondsia chinensis HOM05D001994 ORTHO05D001954 2.1e-22 110.5 186 42.5
Gohir.D06G189800 Gossypium hirsutum HOM05D001994 ORTHO05D001954 2.7e-22 110.2 186 42.5
Gorai.010G222600 Gossypium raimondii HOM05D001994 ORTHO05D001954 2.7e-22 110.2 186 42.5
Gohir.A06G183100 Gossypium hirsutum HOM05D001994 ORTHO05D001954 3.6e-22 109.8 186 42.5
Manes.11G064800 Manihot esculenta HOM05D001994 ORTHO05D001954 3.6e-22 109.8 186 42.5
CiPaw.01G253400 Carya illinoinensis HOM05D001994 ORTHO05D001954 4.7e-22 109.4 186 41.9
FAN09G4548 Fragaria x ananassa HOM05D001994 ORTHO05D001954 4.7e-22 109.4 186 41.4
Thecc.06G039400 Theobroma cacao HOM05D001994 ORTHO05D001954 4.7e-22 109.4 186 42.5
RcHm_v2.0_Chr2g0133361 Rosa chinensis HOM05D001994 ORTHO05D001954 6.1e-22 109.0 186 41.4
Psat5g304720 Pisum sativum HOM05D001994 ORTHO05D001954 8.0e-22 108.6 186 41.9
RcHm_v2.0_Chr2g0133301 Rosa chinensis HOM05D001994 ORTHO05D001954 8.0e-22 108.6 185 41.6
GSVIVG01035904001 Vitis vinifera HOM05D001994 ORTHO05D001954 8.0e-22 108.6 186 43.0
MELO3C017833.2 Cucumis melo HOM05D001994 ORTHO05D001954 1.8e-21 107.5 186 40.9
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 1.8e-21 107.5 186 40.9
FAN02G3685 Fragaria x ananassa HOM05D001994 ORTHO05D001954 1.8e-21 107.5 186 40.9
CANSAT56G4375 Cannabis sativa HOM05D001994 ORTHO05D001954 2.3e-21 107.1 186 40.9
EL10Ac9g22223 Beta vulgaris HOM05D001994 ORTHO05D001954 3.0e-21 106.7 186 40.3
Ciclev10026431m.g Citrus clementina HOM05D001994 ORTHO05D001954 3.0e-21 106.7 186 41.4
TAR625G0574 Trochodendron aralioides HOM05D001994 ORTHO05D001954 3.0e-21 106.7 186 40.3
A06p11930 Brassica napus HOM05D001994 ORTHO05D001954 5.2e-21 105.9 186 40.3
BraA06t24363Z Brassica rapa HOM05D001994 ORTHO05D001954 5.2e-21 105.9 186 40.3
ClCG07G012120 Citrullus lanatus HOM05D001994 ORTHO05D001954 5.2e-21 105.9 186 40.3
CSS0019888 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 6.8e-21 105.5 186 41.4
Haze_16654 Corylus avellana HOM05D001994 ORTHO05D001954 6.8e-21 105.5 186 41.4
MD12G1002100 Malus domestica HOM05D001994 ORTHO05D001954 6.8e-21 105.5 186 39.8
PSO339G5511 Papaver somniferum HOM05D001994 ORTHO05D001954 6.8e-21 105.5 186 39.8
Potri.003G180800 Populus trichocarpa HOM05D001994 ORTHO05D001954 6.8e-21 105.5 186 40.9
TPR.G19142 Trifolium pratense HOM05D001994 ORTHO05D001954 6.8e-21 105.5 186 40.9
TAR636G1457 Trochodendron aralioides HOM05D001994 ORTHO05D001954 6.8e-21 105.5 186 40.3
MD14G1001700 Malus domestica HOM05D001994 ORTHO05D001954 8.8e-21 105.1 186 39.8
Cpa.g.sc10.103 Carica papaya HOM05D001994 ORTHO05D001954 1.2e-20 104.8 186 40.9
Nn2g12287 Nelumbo nucifera HOM05D001994 ORTHO05D001954 1.2e-20 104.8 186 40.3
arahy.Tifrunner.gnm1.ann1.4TE40S Arachis hypogaea HOM05D001994 ORTHO05D001954 1.5e-20 104.4 186 40.3
arahy.Tifrunner.gnm1.ann1.K18KXM Arachis hypogaea HOM05D001994 ORTHO05D001954 1.5e-20 104.4 186 40.3
CiPaw.02G161300 Carya illinoinensis HOM05D001994 ORTHO05D001954 1.5e-20 104.4 186 41.4
TWI75G0158 Tripterygium wilfordii HOM05D001994 ORTHO05D001954 1.5e-20 104.4 186 40.9
Ca_01023_v3 Cicer arietinum L. HOM05D001994 ORTHO05D001954 2.0e-20 104.0 186 40.3
Manes.04G104300 Manihot esculenta HOM05D001994 ORTHO05D001954 2.0e-20 104.0 186 40.3
Aa31LG7G470 Aethionema arabicum HOM05D001994 ORTHO05D001954 2.6e-20 103.6 186 40.3
C05p14110 Brassica napus HOM05D001994 ORTHO05D001954 2.6e-20 103.6 186 39.8
BolC5t30142H Brassica oleracea HOM05D001994 ORTHO05D001954 2.6e-20 103.6 186 39.8
Lalb_Chr14g0374041 Lupinus albus HOM05D001994 ORTHO05D001954 2.6e-20 103.6 186 40.3
THA.LOC104812436 Tarenaya hassleriana HOM05D001994 ORTHO05D001954 2.6e-20 103.6 186 40.3
Medtr2g104910 Medicago truncatula HOM05D001994 ORTHO05D001954 3.4e-20 103.2 186 40.3
Potri.001G047100 Populus trichocarpa HOM05D001994 ORTHO05D001954 3.4e-20 103.2 186 39.8
Atru.chr10.2400 Acer truncatum HOM05D001994 ORTHO05D001954 4.4e-20 102.8 186 40.9
Medtr4g006570 Medicago truncatula HOM05D001994 ORTHO05D001954 4.4e-20 102.8 186 39.8
TWI12G0732 Tripterygium wilfordii HOM05D001994 ORTHO05D001954 4.4e-20 102.8 186 40.3
Sabra03G0132300 Salix brachista HOM05D001994 ORTHO05D001954 5.7e-20 102.4 186 40.3
Aqoxy7G03483 Aquilegia oxysepala HOM05D001994 ORTHO05D001954 7.5e-20 102.1 186 38.7
BcaB03g14513 Brassica carinata HOM05D001994 ORTHO05D001954 7.5e-20 102.1 186 39.8
Prupe.3G096500 Prunus persica HOM05D001994 ORTHO05D001954 7.5e-20 102.1 186 38.7
Actinidia13202 Actinidia chinensis HOM05D001994 ORTHO05D001954 1.3e-19 101.3 186 39.8
PGR031G3441 Punica granatum HOM05D001994 ORTHO05D001954 1.3e-19 101.3 186 41.4
arahy.Tifrunner.gnm1.ann1.U3C25F Arachis hypogaea HOM05D001994 ORTHO05D001954 1.7e-19 100.9 186 40.9
Rhsim07G0162900 Rhododendron simsii HOM05D001994 ORTHO05D001954 1.7e-19 100.9 186 40.3
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 1.7e-19 100.9 186 38.7
CSS0020502 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 2.2e-19 100.5 186 40.3
TPR.G38755 Trifolium pratense HOM05D001994 ORTHO05D001954 2.2e-19 100.5 186 38.7
A09p61110 Brassica napus HOM05D001994 ORTHO05D001954 2.8e-19 100.1 186 39.2
C08p44710 Brassica napus HOM05D001994 ORTHO05D001954 2.8e-19 100.1 186 39.2
Sp1g14180 Schrenkiella parvula HOM05D001994 ORTHO05D001954 2.8e-19 100.1 186 38.2
arahy.Tifrunner.gnm1.ann1.83S23U Arachis hypogaea HOM05D001994 ORTHO05D001954 3.7e-19 99.8 186 40.3
Thhalv10008707m.g Eutrema salsugineum HOM05D001994 ORTHO05D001954 3.7e-19 99.8 185 38.9
Hma1.2p1_0230F.1_g097260 Hydrangea macrophylla HOM05D001994 ORTHO05D001954 3.7e-19 99.8 186 40.3
Rhsim02G0208000 Rhododendron simsii HOM05D001994 ORTHO05D001954 3.7e-19 99.8 186 39.2
vmacro05144 Vaccinium macrocarpon HOM05D001994 ORTHO05D001954 3.7e-19 99.8 187 39.6
Dinv09914 Davidia involucrata HOM05D001994 ORTHO05D001954 4.8e-19 99.4 186 41.4
vmacro11231 Vaccinium macrocarpon HOM05D001994 ORTHO05D001954 4.8e-19 99.4 186 38.7
BcaC07g41467 Brassica carinata HOM05D001994 ORTHO05D001954 8.3e-19 98.6 186 38.7
BraA09t41485Z Brassica rapa HOM05D001994 ORTHO05D001954 8.3e-19 98.6 186 38.7
ECA233G1283 Erigeron canadensis HOM05D001994 ORTHO05D001954 1.1e-18 98.2 186 38.7
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 1.1e-18 98.2 186 37.6
CARHR016400 Cardamine hirsuta HOM05D001994 ORTHO05D001954 1.4e-18 97.8 186 39.2
Lj3g0010287 Lotus japonicus HOM05D001994 ORTHO05D001954 1.4e-18 97.8 186 38.7
Lsat_1_v5_gn_1_42920 Lactuca sativa HOM05D001994 ORTHO05D001954 1.8e-18 97.4 186 38.7
SGA_v2.0_scaffold64G22012 Striga asiatica HOM05D001994 ORTHO05D001954 1.8e-18 97.4 186 40.3
VMungo0331G1149 Vigna mungo HOM05D001994 ORTHO05D001954 2.4e-18 97.1 186 38.7
Phvul.010G160100 Phaseolus vulgaris HOM05D001994 ORTHO05D001954 3.1e-18 96.7 186 38.7
AT1G15880 Arabidopsis thaliana HOM05D001994 ORTHO05D001954 4.1e-18 96.3 186 39.2
HanXRQChr01g0030681 Helianthus annuus HOM05D001994 ORTHO05D001954 4.1e-18 96.3 186 38.2
BcaC07g38797 Brassica carinata HOM05D001994 ORTHO05D001954 5.4e-18 95.9 186 38.2
BolC8t49359H Brassica oleracea HOM05D001994 ORTHO05D001954 5.4e-18 95.9 186 38.2
Lj8A735G56 Lonicera japonica HOM05D001994 ORTHO05D001954 5.4e-18 95.9 188 41.5
AL1G28040 Arabidopsis lyrata HOM05D001994 ORTHO05D001954 9.1e-18 95.1 186 38.7
Cc08_g00070 Coffea canephora HOM05D001994 ORTHO05D001954 9.1e-18 95.1 186 38.7
Oeu056769.1 Olea europaea HOM05D001994 ORTHO05D001954 9.1e-18 95.1 186 38.7
ECA248G1195 Erigeron canadensis HOM05D001994 ORTHO05D001954 1.2e-17 94.7 186 37.6
SGA_v2.0_scaffold20G09080 Striga asiatica HOM05D001994 ORTHO05D001954 1.2e-17 94.7 186 39.2
BolC8t52017H Brassica oleracea HOM05D001994 ORTHO05D001954 2.0e-17 94.0 186 37.6
BcaB03g13053 Brassica carinata HOM05D001994 ORTHO05D001954 2.7e-17 93.6 187 38.0
C08p17330 Brassica napus HOM05D001994 ORTHO05D001954 2.7e-17 93.6 186 37.6
Carub.0001s1568 Capsella rubella HOM05D001994 ORTHO05D001954 2.7e-17 93.6 186 37.6
Glyma.07G025200 Glycine max HOM05D001994 ORTHO05D001954 2.7e-17 93.6 186 37.1
Nn8g39769 Nelumbo nucifera HOM05D001994 ORTHO05D001954 2.7e-17 93.6 186 38.2
A08p31470 Brassica napus HOM05D001994 ORTHO05D001954 3.5e-17 93.2 185 37.3
BraA08t35069Z Brassica rapa HOM05D001994 ORTHO05D001954 3.5e-17 93.2 185 37.3
PSO384G2471 Papaver somniferum HOM05D001994 ORTHO05D001954 4.5e-17 92.8 186 38.2
Migut.A00005 Erythranthe guttata HOM05D001994 ORTHO05D001954 1.0e-16 91.7 187 39.6
HanXRQChr02g0050041 Helianthus annuus HOM05D001994 ORTHO05D001954 1.7e-16 90.9 186 37.1
Nitab4.5_0002503g0100 Nicotiana tabacum HOM05D001994 ORTHO05D001954 1.7e-16 90.9 186 37.6
Glyma.08G217200 Glycine max HOM05D001994 ORTHO05D001954 2.9e-16 90.1 186 37.6
Cfa001888 Carpinus fangiana HOM05D001994 ORTHO05D001954 5.0e-16 89.4 59 79.7
AUR62030827 Chenopodium quinoa HOM05D001994 ORTHO05D001954 5.0e-16 89.4 57 77.2
Nitab4.5_0003811g0030 Nicotiana tabacum HOM05D001994 ORTHO05D001954 5.0e-16 89.4 186 37.1
TAR371G0271 Trochodendron aralioides HOM05D001994 ORTHO05D001954 8.5e-16 88.6 59 74.6
TAR371G0527 Trochodendron aralioides HOM05D001994 ORTHO05D001954 8.5e-16 88.6 59 74.6
Peaxi162Scf00430g00414 Petunia axillaris HOM05D001994 ORTHO05D001954 1.1e-15 88.2 185 36.8
Peaxi162Scf00992g00314 Petunia axillaris HOM05D001994 ORTHO05D001954 1.1e-15 88.2 186 36.6
Nitab4.5_0000486g0060 Nicotiana tabacum HOM05D001994 ORTHO05D001954 1.5e-15 87.8 186 36.6
QL05p035317 Quercus lobata HOM05D001994 ORTHO05D001954 3.2e-15 86.7 58 79.3
CAN.G199.66 Capsicum annuum HOM05D001994 ORTHO05D001954 4.2e-15 86.3 186 36.0
Solyc06g065740.4 Solanum lycopersicum HOM05D001994 ORTHO05D001954 4.2e-15 86.3 186 34.9
Sopen06g024270 Solanum pennellii HOM05D001994 ORTHO05D001954 4.2e-15 86.3 186 34.9
Sed0001620 Sechium edule HOM05D001994 ORTHO05D001954 5.5e-15 85.9 186 34.4
Zm00001eb099480 Zea mays HOM05D001994 ORTHO05D001954 5.5e-15 85.9 186 34.9
CSS0048938 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 7.2e-15 85.5 59 74.6
Nitab4.5_0002973g0040 Nicotiana tabacum HOM05D001994 ORTHO05D001954 7.2e-15 85.5 186 35.5
Zm00001eb312810 Zea mays HOM05D001994 ORTHO05D001954 7.2e-15 85.5 186 34.9
PGSC0003DMG400026095 Solanum tuberosum HOM05D001994 ORTHO05D001954 9.5e-15 85.1 186 34.9
Os08g0440000 Oryza sativa ssp. japonica HOM05D001994 ORTHO05D001954 1.6e-14 84.3 186 36.0
Lj7A730T42 Lonicera japonica HOM05D001994 ORTHO05D001954 3.0e-13 80.1 59 74.6
unitig_748.g8263 Utricularia gibba HOM05D001994 ORTHO05D001954 6.8e-13 79.0 192 32.8
Nn8g41298 Nelumbo nucifera HOM05D001994 ORTHO05D001954 8.8e-13 78.6 59 71.2
Psat7g259720 Pisum sativum HOM05D001994 ORTHO05D001954 8.8e-13 78.6 59 64.4
Nn8g40602 Nelumbo nucifera HOM05D001994 ORTHO05D001954 1.2e-12 78.2 58 72.4
Os09g0416700 Oryza sativa ssp. japonica HOM05D001994 ORTHO05D001954 5.7e-12 75.9 186 33.3
Lsat_1_v5_gn_5_39901 Lactuca sativa HOM05D001994 ORTHO05D001954 7.5e-12 75.5 186 32.3
SalBow4G2573 Salvia bowleyana HOM05D001994 ORTHO05D001954 1.3e-11 74.7 58 67.2
MSTRG.11593 Avicennia marina HOM05D001994 ORTHO05D001954 1.7e-11 74.3 185 34.1
CDE02G4158 Ceratophyllum demersum HOM05D001994 ORTHO05D001954 2.8e-11 73.6 186 33.3
BcaC05g25210 Brassica carinata HOM05D001994 ORTHO05D001954 1.8e-10 70.9 58 62.1
C05p10860 Brassica napus HOM05D001994 ORTHO05D001954 1.8e-10 70.9 59 59.3
BolC5t29832H Brassica oleracea HOM05D001994 ORTHO05D001954 1.8e-10 70.9 59 59.3
QL05p035311 Quercus lobata HOM05D001994 ORTHO05D001954 1.8e-10 70.9 45 82.2
AUR62030826 Chenopodium quinoa HOM05D000333 ORTHO05D001954 2.4e-10 70.5 38 94.7
ATR0184G001 Amborella trichopoda HOM05D001994 ORTHO05D001954 3.1e-10 70.1 186 31.7
unitig_32.g10889 Utricularia gibba HOM05D001994 ORTHO05D001954 4.1e-10 69.7 184 32.1
Ca_28222_v3 Cicer arietinum L. HOM05D001994 ORTHO05D001954 7.0e-10 68.9 38 92.1
Glyma.07G025100 Glycine max HOM05D001994 ORTHO05D001954 2.0e-09 67.4 38 89.5
COL.COLO4_35861 Corchorus olitorius HOM05D001994 ORTHO05D001954 4.5e-09 66.2 37 89.2
Lj7A730G44 Lonicera japonica HOM05D001994 ORTHO05D001954 4.5e-09 66.2 39 84.6
Actinidia14114 Actinidia chinensis HOM05D001994 ORTHO05D001954 1.0e-08 65.1 39 84.6
BcaC08g47615 Brassica carinata HOM05D001994 ORTHO05D001954 3.3e-07 60.1 54 55.6
BolC3t20087H Brassica oleracea HOM05D001994 ORTHO05D001954 9.5e-07 58.5 49 59.2
BolC6t40170H Brassica oleracea HOM05D001994 ORTHO05D001954 9.5e-07 58.5 49 59.2


User provided reference genes

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