Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06126 Selenicereus undatus HOM05D003119 ORTHO05D003559 5.5e-47 190.7 98 100.0
Sc10g0000230 Simmondsia chinensis HOM05D003119 ORTHO05D003559 8.0e-14 80.5 70 60.0
AUR62009404 Chenopodium quinoa HOM05D003119 ORTHO05D003559 1.4e-10 69.7 70 54.3
Manes.10G139100 Manihot esculenta HOM05D003119 ORTHO05D003559 3.1e-10 68.6 56 57.1
TWI60G0203 Tripterygium wilfordii HOM05D003119 ORTHO05D003559 4.1e-10 68.2 73 52.1
EL10Ac2g04355 Beta vulgaris HOM05D003119 ORTHO05D003559 5.4e-10 67.8 68 57.4
Lj3g0004567 Lotus japonicus HOM05D003119 ORTHO05D003559 1.2e-09 66.6 70 51.4
Atru.chr11.2581 Acer truncatum HOM05D003119 ORTHO05D003559 1.6e-09 66.2 75 49.3
AUR62023087 Chenopodium quinoa HOM05D003119 ORTHO05D003559 1.6e-09 66.2 68 54.4
Psat5g211360 Pisum sativum HOM05D003119 ORTHO05D003559 1.6e-09 66.2 72 48.6
Hma1.2p1_1042F.1_g251140 Hydrangea macrophylla HOM05D003119 ORTHO05D003559 3.5e-09 65.1 51 58.8
CiPaw.14G002300 Carya illinoinensis HOM05D003119 ORTHO05D003559 4.5e-09 64.7 73 47.9
RcHm_v2.0_Chr1g0317311 Rosa chinensis HOM05D003119 ORTHO05D003559 4.5e-09 64.7 69 49.3
TPR.G28382 Trifolium pratense HOM05D000009 ORTHO05D003559 4.5e-09 64.7 63 49.2
ATR0626G097 Amborella trichopoda HOM05D003119 ORTHO05D003559 1.3e-08 63.2 70 45.7
AUR62029809 Chenopodium quinoa HOM05D003119 ORTHO05D003559 1.3e-08 63.2 78 46.2
Ca_14529_v3 Cicer arietinum L. HOM05D003119 ORTHO05D003559 1.3e-08 63.2 70 47.1
HanXRQChr16g0524981 Helianthus annuus HOM05D003119 ORTHO05D003559 1.3e-08 63.2 46 60.9
SGA_v2.0_scaffold119G32756 Striga asiatica HOM05D003119 ORTHO05D003559 1.3e-08 63.2 65 47.7
arahy.Tifrunner.gnm1.ann1.X582RR Arachis hypogaea HOM05D003119 ORTHO05D003559 1.7e-08 62.8 66 50.0
Lalb_Chr04g0263891 Lupinus albus HOM05D003119 ORTHO05D003559 1.7e-08 62.8 66 48.5
Medtr3g032980 Medicago truncatula HOM05D003119 ORTHO05D003559 1.7e-08 62.8 68 50.0
CSS0008603 Camellia sinensis var. sinensis HOM05D003119 ORTHO05D003559 2.2e-08 62.4 68 50.0
CSS0027617 Camellia sinensis var. sinensis HOM05D003119 ORTHO05D003559 2.2e-08 62.4 68 50.0
Rhsim07G0058300 Rhododendron simsii HOM05D003119 ORTHO05D003559 2.2e-08 62.4 47 59.6
CiPaw.13G007600 Carya illinoinensis HOM05D003119 ORTHO05D003559 2.9e-08 62.0 71 46.5
Nn7g36274 Nelumbo nucifera HOM05D003119 ORTHO05D003559 2.9e-08 62.0 56 50.0
Sp6g30330 Schrenkiella parvula HOM05D003119 ORTHO05D003559 2.9e-08 62.0 68 54.4
arahy.Tifrunner.gnm1.ann1.SMYW0Q Arachis hypogaea HOM05D003119 ORTHO05D003559 3.8e-08 61.6 66 48.5
SalBow5G4976 Salvia bowleyana HOM05D003119 ORTHO05D003559 3.8e-08 61.6 67 44.8
TAR633G1226 Trochodendron aralioides HOM05D003119 ORTHO05D003559 3.8e-08 61.6 88 40.9
Cpa.g.sc125.32 Carica papaya HOM05D003119 ORTHO05D003559 5.0e-08 61.2 68 42.6
MD07G1018700 Malus domestica HOM05D003119 ORTHO05D003559 5.0e-08 61.2 45 64.4
Migut.B01276 Erythranthe guttata HOM05D003119 ORTHO05D003559 6.5e-08 60.8 70 42.9
vmacro13692 Vaccinium macrocarpon HOM05D003119 ORTHO05D003559 6.5e-08 60.8 67 47.8
PGR031G0137 Punica granatum HOM05D003119 ORTHO05D003559 8.5e-08 60.5 46 60.9
Ciclev10030724m.g Citrus clementina HOM05D003119 ORTHO05D003559 1.1e-07 60.1 73 47.9
Cc02_g29010 Coffea canephora HOM05D003119 ORTHO05D003559 1.1e-07 60.1 52 55.8
Thecc.01G407300 Theobroma cacao HOM05D003119 ORTHO05D003559 1.1e-07 60.1 74 43.2
Lsat_1_v5_gn_4_32101 Lactuca sativa HOM05D003119 ORTHO05D003559 1.5e-07 59.7 46 56.5
Sopen01g034580 Solanum pennellii HOM05D003119 ORTHO05D003559 1.5e-07 59.7 68 42.6
MSTRG.20565 Avicennia marina HOM05D003119 ORTHO05D003559 1.9e-07 59.3 49 53.1
Dinv43414 Davidia involucrata HOM05D003119 ORTHO05D003559 1.9e-07 59.3 73 43.8
Eucgr.G03358 Eucalyptus grandis HOM05D003119 ORTHO05D003559 2.5e-07 58.9 57 49.1
Solyc01g087610.3 Solanum lycopersicum HOM05D003119 ORTHO05D003559 2.5e-07 58.9 68 41.2
ECA234G0904 Erigeron canadensis HOM05D003119 ORTHO05D003559 3.2e-07 58.5 47 55.3
FvH4_7g01470 Fragaria vesca HOM05D003119 ORTHO05D003559 3.2e-07 58.5 73 43.8
FAN06G3340 Fragaria x ananassa HOM05D003119 ORTHO05D003559 3.2e-07 58.5 73 43.8
Gorai.004G170700 Gossypium raimondii HOM05D003119 ORTHO05D003559 3.2e-07 58.5 68 48.5
GSVIVG01032165001 Vitis vinifera HOM05D003119 ORTHO05D003559 3.2e-07 58.5 51 51.0
CARHR199750 Cardamine hirsuta HOM05D003119 ORTHO05D003559 4.2e-07 58.2 45 62.2
CDE07G0712 Ceratophyllum demersum HOM05D003119 ORTHO05D003559 4.2e-07 58.2 37 67.6
FAN01G3156 Fragaria x ananassa HOM05D003119 ORTHO05D003559 4.2e-07 58.2 74 43.2
Glyma.10G091000 Glycine max HOM05D003119 ORTHO05D003559 4.2e-07 58.2 70 48.6
Carub.0006s1185 Capsella rubella HOM05D003119 ORTHO05D003559 5.5e-07 57.8 67 47.8
Aqoxy4G00031 Aquilegia oxysepala HOM05D003119 ORTHO05D003559 7.2e-07 57.4 73 43.8
MELO3C023569.2 Cucumis melo HOM05D003119 ORTHO05D003559 7.2e-07 57.4 56 44.6
CsaV3_7G030810 Cucumis sativus L. HOM05D003119 ORTHO05D003559 7.2e-07 57.4 56 44.6
Gohir.A08G142900 Gossypium hirsutum HOM05D003119 ORTHO05D003559 7.2e-07 57.4 68 47.1
BcaNung04192 Brassica carinata HOM05D003119 ORTHO05D003559 9.4e-07 57.0 82 43.9
C02p06360 Brassica napus HOM05D003119 ORTHO05D003559 9.4e-07 57.0 82 43.9
ClCG09G003910 Citrullus lanatus HOM05D003119 ORTHO05D003559 9.4e-07 57.0 51 47.1
FAN10G2435 Fragaria x ananassa HOM05D003119 ORTHO05D003559 9.4e-07 57.0 73 42.5
Potri.009G058100 Populus trichocarpa HOM05D003119 ORTHO05D003559 9.4e-07 57.0 51 54.9
CAN.G219.63 Capsicum annuum HOM05D003119 ORTHO05D003559 1.2e-06 56.6 68 39.7
FAN01G1325 Fragaria x ananassa HOM05D003119 ORTHO05D003559 1.2e-06 56.6 73 42.5
Aa31sc576G10 Aethionema arabicum HOM05D003119 ORTHO05D003559 1.6e-06 56.2 80 41.2
Cfa010802 Carpinus fangiana HOM05D003119 ORTHO05D003559 1.6e-06 56.2 64 50.0
BolC2t06579H Brassica oleracea HOM05D003119 ORTHO05D003559 2.1e-06 55.8 74 48.6
QL04p009441 Quercus lobata HOM05D003119 ORTHO05D003559 2.1e-06 55.8 68 42.6
Sabra09G0042700 Salix brachista HOM05D003119 ORTHO05D003559 2.1e-06 55.8 68 44.1
THA.LOC104809848 Tarenaya hassleriana HOM05D003119 ORTHO05D003559 2.1e-06 55.8 58 48.3
COL.COLO4_04878 Corchorus olitorius HOM05D003119 ORTHO05D003559 3.6e-06 55.1 67 43.3
Duzib133G0610 Durio zibethinus HOM05D003119 ORTHO05D003559 3.6e-06 55.1 70 41.4
Glyma.06G186000 Glycine max HOM05D003119 ORTHO05D003559 3.6e-06 55.1 46 54.3
A02p02110 Brassica napus HOM05D003119 ORTHO05D003559 4.7e-06 54.7 82 43.9
BraA02t05183Z Brassica rapa HOM05D003119 ORTHO05D003559 4.7e-06 54.7 68 50.0
Haze_03156 Corylus avellana HOM05D003119 ORTHO05D003559 4.7e-06 54.7 49 55.1
Thhalv10012727m.g Eutrema salsugineum HOM05D003119 ORTHO05D003559 4.7e-06 54.7 67 47.8
Nitab4.5_0008441g0010 Nicotiana tabacum HOM05D003119 ORTHO05D003559 4.7e-06 54.7 68 38.2
Phvul.005G023300 Phaseolus vulgaris HOM05D003119 ORTHO05D003559 6.1e-06 54.3 74 45.9
arahy.Tifrunner.gnm1.ann1.MYUF54 Arachis hypogaea HOM05D003119 ORTHO05D003559 8.0e-06 53.9 46 56.5


User provided reference genes

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