Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.3e-249 865.9 452 100.0
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.9e-131 473.4 352 77.6
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.6e-117 427.2 290 83.4
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 2.0e-112 410.2 288 79.9
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.4e-108 397.5 334 71.6
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.5e-107 394.0 325 72.9
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 2.0e-107 393.7 242 79.3
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 9.7e-107 391.3 242 78.5
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 3.1e-105 386.3 240 78.3
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 4.1e-105 386.0 240 77.9
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 4.1e-105 386.0 316 72.5
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 9.1e-105 384.8 287 79.4
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.7e-104 383.3 242 76.4
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 5.9e-104 382.1 242 79.3
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 7.7e-104 381.7 242 76.9
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.7e-103 380.6 301 73.8
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.9e-103 379.8 240 78.3
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.5e-103 378.6 349 66.2
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 6.5e-103 378.6 242 75.6
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 6.5e-103 378.6 240 79.2
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.1e-102 377.9 333 69.4
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.9e-102 377.1 345 66.4
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.9e-102 377.1 353 66.0
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.9e-102 377.1 242 75.6
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 2.5e-102 376.7 242 78.1
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 3.2e-102 376.3 242 76.4
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.2e-102 375.9 241 75.9
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 7.2e-102 375.2 345 65.8
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 9.4e-102 374.8 244 75.0
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 1.0e-100 371.3 391 61.9
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.4e-100 370.9 237 76.8
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.4e-100 370.9 243 75.3
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 3.0e-100 369.8 242 74.0
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 3.0e-100 369.8 287 76.3
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 6.8e-100 368.6 308 72.1
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.5e-99 367.5 240 74.6
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 1.5e-99 367.5 233 77.3
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 2.0e-99 367.1 241 75.5
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 3.4e-99 366.3 240 74.6
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 4.4e-99 365.9 240 75.4
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 9.8e-99 364.8 287 76.3
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 9.8e-99 364.8 242 75.2
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.3e-98 364.4 240 75.0
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.3e-98 364.4 240 75.0
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.7e-98 364.0 289 75.4
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 2.2e-98 363.6 293 74.7
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 2.4e-97 360.1 252 71.4
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 2.4e-97 360.1 224 79.0
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.7e-96 356.7 232 75.9
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.5e-96 356.3 275 67.3
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 5.9e-96 355.5 295 74.6
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 1.0e-95 354.8 239 72.8
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 1.3e-95 354.4 240 73.3
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.3e-95 354.4 242 73.1
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 2.9e-95 353.2 403 59.1
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 3.8e-95 352.8 236 73.7
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 6.6e-95 352.1 240 72.5
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.5e-94 350.9 242 72.7
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 3.3e-94 349.7 236 73.7
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 3.3e-94 349.7 236 73.3
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 5.5e-94 349.0 240 71.2
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 9.5e-94 348.2 294 71.8
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 9.5e-94 348.2 275 76.7
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.2e-93 347.8 242 71.5
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 1.6e-93 347.4 294 73.1
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 1.6e-93 347.4 234 73.9
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 2.8e-93 346.7 242 71.5
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 8.0e-93 345.1 243 72.0
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 1.8e-92 344.0 236 73.3
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.8e-92 344.0 241 71.0
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 4.0e-92 342.8 244 71.7
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.2e-92 342.4 300 70.3
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 1.2e-91 341.3 245 71.4
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 5.7e-91 339.0 228 72.4
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 9.8e-91 338.2 240 70.4
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 2.2e-90 337.0 243 70.8
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 8.3e-90 335.1 244 69.7
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 1.1e-89 334.7 244 70.5
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 1.8e-89 334.0 243 70.4
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 7.0e-89 332.0 241 70.5
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 2.0e-88 330.5 233 71.2
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 2.0e-88 330.5 233 70.8
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 3.5e-88 329.7 213 77.0
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 7.8e-88 328.6 244 69.7
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.3e-87 327.8 244 69.7
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 1.7e-87 327.4 241 66.4
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 7.3e-86 322.0 242 69.0
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 2.1e-85 320.5 240 67.1
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 1.0e-84 318.2 212 73.6
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 1.4e-84 317.8 242 66.1
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.4e-84 317.8 289 70.2
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 6.8e-84 315.5 241 67.2
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 1.2e-83 314.7 245 67.3
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.2e-83 314.7 234 66.2
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.2e-83 314.7 247 67.2
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 2.0e-83 313.9 240 67.5
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 2.6e-83 313.5 247 66.8
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 5.8e-83 312.4 271 73.1
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 1.3e-82 311.2 247 68.0
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 2.2e-82 310.5 240 65.4
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 6.4e-82 308.9 243 65.0
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 8.3e-82 308.5 291 67.7
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 2.0e-80 303.9 240 65.0
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 2.0e-80 303.9 249 67.1
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 4.6e-80 302.8 358 57.0
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 6.0e-80 302.4 246 67.1
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.0e-79 301.6 243 63.8
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 3.0e-79 300.1 247 65.6
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 6.6e-79 298.9 240 65.0
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.9e-78 297.4 247 65.2
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 3.3e-78 296.6 239 67.4
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 5.6e-78 295.8 331 61.0
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 6.2e-77 292.4 234 65.8
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.5e-75 287.7 198 72.7
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 2.6e-75 287.0 246 64.2
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 5.8e-75 285.8 249 63.1
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 4.9e-74 282.7 183 78.1
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 6.4e-74 282.3 247 62.8
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 9.2e-73 278.5 196 72.4
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 4.6e-72 276.2 242 60.7
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 1.0e-71 275.0 187 73.8
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 4.4e-67 259.6 298 60.4
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 6.4e-66 255.8 243 58.0
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.2e-61 241.5 179 67.6
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 1.6e-61 241.1 199 64.3
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.2e-59 235.0 238 56.3
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.2e-59 235.0 238 56.7
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.3e-58 231.5 245 53.5
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 3.8e-58 229.9 272 61.8
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 4.6e-56 223.0 202 59.9
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.8e-53 213.8 249 50.6
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 5.4e-41 172.9 254 42.9
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 1.0e-39 168.7 153 54.9
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 1.3e-39 168.3 132 65.9
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 5.1e-39 166.4 261 54.4
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 1.8e-36 157.9 262 41.6
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 3.4e-35 153.7 244 41.8
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.5e-30 138.3 229 41.5
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.5e-30 138.3 228 39.9
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 2.4e-28 131.0 230 39.6
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 3.1e-28 130.6 229 41.5
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 9.0e-28 129.0 254 36.2
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 5.5e-25 119.8 240 39.2
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 2.1e-24 117.9 234 36.8
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 2.7e-24 117.5 189 44.4
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 6.1e-24 116.3 232 37.1
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 7.9e-24 115.9 237 38.0
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.3e-23 115.2 251 34.7
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.8e-23 114.8 240 35.0
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.8e-23 114.8 242 36.8
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.3e-23 114.4 240 36.7
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 8.7e-23 112.5 239 36.4
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.9e-22 111.3 231 36.8
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 3.3e-22 110.5 256 35.5
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 5.7e-22 109.8 53 92.5
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.2e-21 107.8 235 34.0
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.1e-20 105.5 226 36.3
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.7e-18 98.2 211 36.0
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 5.5e-17 93.2 205 36.6
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 7.2e-17 92.8 200 37.5
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.6e-16 90.1 47 83.0
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 1.0e-15 89.0 56 69.6
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 2.0e-14 84.7 176 38.6
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 3.3e-14 84.0 50 72.0
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.8e-13 80.9 244 32.0
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 8.2e-13 79.3 262 30.2
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.2e-10 71.2 104 44.2
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 3.8e-10 70.5 51 56.9
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 8.5e-10 69.3 191 33.0
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 4.2e-09 67.0 74 45.9
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 9.4e-09 65.9 165 35.2
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.2e-08 65.5 37 70.3
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 1.8e-07 61.6 250 24.0
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 6.7e-07 59.7 48 54.2
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 3.3e-06 57.4 54 50.0


User provided reference genes

Program Settings