Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 2.9e-123 445.3 228 100.0
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 9.0e-77 290.8 265 60.4
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 2.9e-75 285.8 237 66.2
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.7e-70 270.0 255 59.2
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 4.1e-69 265.4 230 63.0
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.7e-67 260.0 235 61.3
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 3.0e-64 249.2 233 59.7
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 3.0e-64 249.2 228 60.1
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 3.0e-64 249.2 229 60.3
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 3.0e-64 249.2 228 59.6
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 3.9e-64 248.8 230 59.6
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 6.7e-64 248.1 235 59.6
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 8.8e-64 247.7 230 59.1
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 8.8e-64 247.7 227 61.2
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 8.8e-64 247.7 232 59.9
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 8.8e-64 247.7 231 59.7
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 8.8e-64 247.7 227 62.6
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.1e-63 247.3 227 61.2
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 1.1e-63 247.3 231 57.6
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 1.5e-63 246.9 234 59.8
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.6e-63 246.1 233 59.2
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 3.3e-63 245.7 230 58.3
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 3.3e-63 245.7 234 59.0
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 4.4e-63 245.4 219 62.6
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 4.4e-63 245.4 229 59.4
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 4.4e-63 245.4 230 58.3
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 4.4e-63 245.4 230 58.3
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 5.7e-63 245.0 230 59.1
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 7.4e-63 244.6 230 58.7
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 7.4e-63 244.6 227 60.8
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 7.4e-63 244.6 230 58.7
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 9.7e-63 244.2 232 61.2
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 1.7e-62 243.4 232 58.6
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.7e-62 243.4 229 59.4
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.8e-62 242.7 229 57.6
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.8e-62 242.7 230 58.7
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.8e-62 242.7 230 58.7
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 6.3e-62 241.5 233 58.4
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 6.3e-62 241.5 230 58.7
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 1.1e-61 240.7 229 57.2
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 7.0e-61 238.0 231 56.7
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.2e-60 237.3 231 56.7
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.2e-60 237.3 258 53.5
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.5e-60 236.9 229 56.8
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 1.5e-60 236.9 238 56.3
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 1.5e-60 236.9 226 59.3
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 2.0e-60 236.5 237 57.0
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.0e-59 234.2 231 55.8
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 1.0e-59 234.2 231 58.0
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.3e-59 233.8 237 57.8
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 1.7e-59 233.4 230 59.1
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 1.7e-59 233.4 231 56.7
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 3.8e-59 232.3 231 54.5
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 6.5e-59 231.5 231 56.3
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.5e-59 231.5 231 58.0
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 8.5e-59 231.1 218 60.6
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 8.5e-59 231.1 230 56.5
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 1.1e-58 230.7 198 61.6
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.1e-58 230.7 225 58.7
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.5e-58 230.3 231 55.8
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.9e-58 229.9 231 56.3
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.9e-58 229.9 233 54.5
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 3.2e-58 229.2 197 60.4
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 4.2e-58 228.8 239 56.5
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 4.2e-58 228.8 231 53.2
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 4.2e-58 228.8 219 56.6
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 9.4e-58 227.6 221 55.2
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 9.4e-58 227.6 231 54.1
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 9.4e-58 227.6 221 57.0
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 2.1e-57 226.5 231 53.7
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.1e-57 226.5 200 60.5
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 2.7e-57 226.1 230 54.8
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 2.7e-57 226.1 231 53.2
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 6.1e-57 224.9 229 56.3
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 6.1e-57 224.9 200 59.5
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 6.1e-57 224.9 231 53.2
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 1.8e-56 223.4 234 54.7
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 1.8e-56 223.4 231 55.8
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 3.0e-56 222.6 199 58.3
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 3.9e-56 222.2 224 56.2
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 8.8e-56 221.1 183 61.2
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.1e-55 220.7 225 56.9
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 1.1e-55 220.7 220 55.0
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 1.1e-55 220.7 207 56.5
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 1.5e-55 220.3 224 55.8
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 2.0e-55 219.9 226 56.6
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 2.0e-55 219.9 212 59.0
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 2.0e-55 219.9 236 52.5
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 2.6e-55 219.5 228 55.3
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 4.4e-55 218.8 216 57.4
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 7.4e-55 218.0 239 51.9
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 1.3e-54 217.2 230 53.9
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 1.3e-54 217.2 230 53.9
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 1.3e-54 217.2 200 59.5
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 1.7e-54 216.9 230 55.2
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 2.2e-54 216.5 231 55.4
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.7e-54 215.7 198 57.6
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 6.3e-54 214.9 234 53.4
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 1.1e-53 214.2 200 57.0
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.8e-53 213.4 146 75.3
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 1.8e-53 213.4 168 65.5
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 2.4e-53 213.0 220 53.6
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 3.1e-53 212.6 228 56.1
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 5.3e-53 211.8 146 74.7
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 5.3e-53 211.8 212 58.0
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 7.0e-53 211.5 222 55.4
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.6e-52 210.3 228 53.1
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.6e-52 210.3 233 53.6
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 2.0e-52 209.9 143 75.5
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 2.6e-52 209.5 227 54.6
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 3.5e-52 209.1 212 57.1
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 5.9e-52 208.4 212 57.1
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 7.7e-52 208.0 151 67.5
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.9e-51 206.1 225 53.3
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.9e-51 206.1 144 69.4
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 5.0e-51 205.3 181 58.0
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.1e-50 204.1 150 68.7
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 2.1e-49 199.9 222 54.5
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 2.7e-49 199.5 144 72.9
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 8.0e-49 198.0 234 53.0
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 1.8e-48 196.8 195 55.4
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 1.5e-47 193.7 163 63.8
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 2.6e-47 193.0 220 50.0
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 2.2e-46 189.9 225 52.4
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 3.7e-46 189.1 219 53.4
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 6.3e-46 188.3 150 65.3
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 7.0e-45 184.9 134 70.1
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 1.5e-42 177.2 218 48.2
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.5e-42 176.4 225 46.2
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.2e-41 174.1 146 61.0
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 3.6e-41 172.6 166 57.2
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.1e-41 171.8 151 60.3
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 8.0e-41 171.4 230 45.7
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 8.0e-41 171.4 230 45.7
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 8.8e-40 167.9 191 49.7
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 8.8e-40 167.9 128 65.6
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 2.6e-39 166.4 228 49.6
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 3.7e-38 162.5 142 59.9
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 2.1e-33 146.7 99 71.7
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 4.7e-33 145.6 100 76.0
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 3.0e-32 142.9 101 72.3
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 5.2e-32 142.1 141 55.3
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 5.7e-31 138.7 117 61.5
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 7.5e-31 138.3 132 59.1
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 2.7e-28 129.8 98 65.3
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.3e-27 127.5 103 65.0
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.9e-27 125.9 162 45.1
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 4.4e-23 112.5 153 47.7
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.7e-22 110.5 86 60.5
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 7.8e-20 101.7 71 76.1
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 2.3e-16 90.1 95 56.8
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 2.3e-16 90.1 95 56.8
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 8.9e-16 88.2 64 73.4
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.4e-13 80.1 63 57.1
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 3.2e-13 79.7 103 42.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 2.7e-12 76.6 105 41.0
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 2.1e-09 67.0 126 32.5


User provided reference genes

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