Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 4.7e-168 594.7 321 100.0
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 2.5e-153 545.8 320 84.1
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.8e-151 539.7 315 85.1
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.5e-150 536.6 315 84.4
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 2.3e-138 496.1 311 76.8
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.6e-136 490.0 312 76.3
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 2.1e-136 489.6 314 76.1
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.7e-136 488.4 309 77.3
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 1.8e-135 486.5 311 74.9
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 3.1e-135 485.7 309 75.7
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 3.1e-135 485.7 312 75.3
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 3.1e-135 485.7 319 74.0
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 5.2e-135 485.0 313 75.1
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 2.0e-134 483.0 312 75.3
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 4.4e-134 481.9 313 74.4
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 4.4e-134 481.9 313 74.4
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 5.8e-134 481.5 308 74.7
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 7.5e-134 481.1 309 76.7
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 9.8e-134 480.7 313 74.1
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-133 480.3 313 73.8
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 2.9e-133 479.2 319 72.7
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 4.9e-133 478.4 309 74.1
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 8.3e-133 477.6 311 74.3
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 8.3e-133 477.6 309 75.7
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 1.1e-132 477.2 319 72.4
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 1.1e-132 477.2 313 74.8
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 1.9e-132 476.5 319 72.4
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 1.9e-132 476.5 313 73.5
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.9e-132 476.5 310 74.2
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.9e-132 476.5 310 74.2
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 2.4e-132 476.1 305 74.4
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 3.2e-132 475.7 313 73.5
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 4.1e-132 475.3 308 74.0
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 4.1e-132 475.3 318 72.3
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 5.4e-132 474.9 309 74.4
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 7.0e-132 474.6 313 74.1
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 7.0e-132 474.6 319 73.7
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 7.0e-132 474.6 319 73.7
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.2e-131 473.8 310 73.9
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 1.6e-131 473.4 320 71.6
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.6e-131 473.4 300 76.3
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.6e-131 473.4 309 74.4
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 2.7e-131 472.6 318 72.0
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 3.5e-131 472.2 317 72.2
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 1.0e-130 470.7 319 72.7
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.3e-130 470.3 317 73.5
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 1.3e-130 470.3 311 74.0
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 1.7e-130 469.9 309 74.1
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 2.3e-130 469.5 309 74.4
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 2.3e-130 469.5 320 71.2
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 3.0e-130 469.2 314 72.6
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 5.1e-130 468.4 314 72.6
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 8.6e-130 467.6 298 75.2
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.1e-129 467.2 309 74.1
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 1.5e-129 466.8 309 73.8
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 1.5e-129 466.8 304 72.4
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 1.9e-129 466.5 311 73.6
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 4.3e-129 465.3 311 75.2
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 4.3e-129 465.3 309 73.8
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 1.6e-128 463.4 296 75.3
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 2.1e-128 463.0 290 77.2
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 2.8e-128 462.6 308 76.0
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 3.6e-128 462.2 295 74.9
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 3.6e-128 462.2 308 73.1
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 6.2e-128 461.5 318 69.8
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 6.2e-128 461.5 311 73.3
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 8.1e-128 461.1 309 73.8
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 1.8e-127 459.9 300 73.3
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 1.8e-127 459.9 308 72.7
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 2.3e-127 459.5 309 80.3
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 5.2e-127 458.4 308 72.7
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.2e-126 457.2 300 72.7
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 1.2e-126 457.2 300 73.0
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.2e-126 457.2 304 71.7
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 1.5e-126 456.8 300 73.0
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.0e-126 456.4 300 73.0
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.0e-126 456.4 300 73.0
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.0e-126 456.4 300 73.0
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 2.0e-126 456.4 309 72.2
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 4.4e-126 455.3 313 69.3
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 5.8e-126 454.9 317 68.8
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 5.8e-126 454.9 317 68.8
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 5.8e-126 454.9 317 68.8
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 5.8e-126 454.9 296 77.4
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 7.5e-126 454.5 300 72.0
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.3e-125 453.8 317 68.8
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 2.2e-125 453.0 309 72.5
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.2e-125 453.0 339 67.3
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 2.9e-125 452.6 300 71.7
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 3.7e-125 452.2 314 71.7
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 4.9e-125 451.8 314 75.8
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 8.3e-125 451.1 300 71.3
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.1e-124 450.7 307 72.3
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 2.7e-123 446.0 293 74.4
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.7e-123 446.0 308 70.5
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 8.6e-122 441.0 306 70.3
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 7.3e-121 438.0 293 72.4
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.6e-120 436.8 311 69.8
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.6e-120 436.8 300 70.0
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.6e-120 435.6 306 69.6
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 3.1e-119 432.6 313 68.4
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 7.6e-118 427.9 293 73.0
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 7.6e-118 427.9 290 71.4
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.8e-117 425.6 312 65.1
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.4e-116 423.7 336 64.0
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.9e-116 423.3 308 69.2
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 5.4e-116 421.8 290 72.8
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 1.7e-114 416.8 311 68.5
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.9e-114 415.6 312 64.4
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 1.5e-113 413.7 294 69.4
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 5.6e-113 411.8 308 64.6
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 9.6e-113 411.0 331 65.0
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.6e-112 410.2 307 65.5
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 2.4e-111 406.4 258 81.4
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 2.9e-109 399.4 294 66.7
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 3.2e-108 396.0 268 71.3
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 6.6e-106 388.3 348 58.0
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.5e-105 387.1 313 61.3
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.5e-105 387.1 313 61.3
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 5.6e-105 385.2 257 74.7
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 4.8e-104 382.1 314 64.0
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 6.2e-104 381.7 262 72.1
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 2.4e-103 379.8 255 72.9
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 5.3e-103 378.6 278 69.1
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.8e-95 353.6 242 71.1
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 2.0e-94 350.1 234 73.9
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.9e-93 346.3 313 58.5
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 9.3e-92 341.3 227 70.5
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 9.3e-92 341.3 305 59.3
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.3e-90 337.4 186 83.9
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 5.1e-90 335.5 308 56.8
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.8e-85 319.3 187 79.1
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 7.1e-84 315.1 185 78.9
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.4e-76 290.8 313 54.6
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 9.4e-76 288.1 233 67.0
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 6.9e-71 271.9 137 91.2
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.8e-64 250.0 197 64.5
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.5e-61 238.8 262 52.3
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 4.8e-56 222.6 179 63.7
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.8e-48 196.1 167 61.7
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.8e-35 153.7 101 75.2
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 4.7e-35 152.9 99 77.8
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.0e-34 151.8 107 69.2
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.2e-33 148.3 96 74.0
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.3e-32 144.8 83 78.3
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 5.4e-31 139.4 82 74.4
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 8.0e-27 125.6 255 29.8
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 6.8e-26 122.5 85 72.9
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 7.5e-25 119.0 83 65.1
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.4e-23 114.8 86 66.3
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 2.4e-23 114.0 117 53.8
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 9.2e-23 112.1 101 60.4
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.1e-19 100.9 81 64.2
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.1e-18 97.1 59 71.2
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 6.8e-18 95.9 65 67.7
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 8.9e-18 95.5 64 68.8
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 1.3e-13 81.6 52 67.3
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 7.6e-09 65.9 79 49.4


User provided reference genes

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