Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 5.8e-203 710.7 362 100.0
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.9e-113 413.3 363 63.4
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.5e-110 403.7 364 61.3
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 7.6e-102 374.8 355 59.2
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 3.5e-99 365.9 352 57.1
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 1.3e-98 364.0 315 61.3
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 1.7e-98 363.6 358 57.0
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 3.9e-98 362.5 315 61.9
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 6.6e-98 361.7 349 57.0
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 4.3e-97 359.0 356 56.2
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 5.6e-97 358.6 336 58.6
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 1.2e-96 357.5 337 57.6
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 1.6e-96 357.1 357 57.1
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 1.6e-96 357.1 312 62.2
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 2.8e-96 356.3 356 56.7
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 3.6e-96 355.9 356 56.7
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 6.2e-96 355.1 356 58.1
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 8.1e-96 354.8 358 56.4
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 1.4e-95 354.0 362 55.2
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 2.4e-95 353.2 357 54.9
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 1.2e-94 350.9 316 59.2
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 2.0e-94 350.1 354 56.5
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 2.6e-94 349.7 305 61.6
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 3.4e-94 349.4 358 56.1
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 4.4e-94 349.0 356 56.2
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 4.4e-94 349.0 316 58.9
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 4.4e-94 349.0 321 58.6
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 1.7e-93 347.1 312 59.6
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 1.7e-93 347.1 360 54.7
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 2.2e-93 346.7 312 59.3
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 2.9e-93 346.3 359 54.6
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 2.9e-93 346.3 341 55.1
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 2.9e-93 346.3 359 54.6
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 6.4e-93 345.1 309 56.6
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 8.4e-93 344.7 309 56.6
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 1.4e-92 344.0 317 58.4
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 2.4e-92 343.2 347 55.0
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 2.4e-92 343.2 309 56.0
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 1.6e-91 340.5 314 59.2
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 1.6e-91 340.5 319 55.5
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 2.1e-91 340.1 351 55.0
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 7.8e-91 338.2 363 53.4
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 2.3e-90 336.7 312 57.7
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 2.5e-89 333.2 319 54.9
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 5.6e-89 332.0 310 57.1
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 9.6e-89 331.3 301 56.5
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 2.1e-88 330.1 320 56.2
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 3.6e-88 329.3 374 50.8
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 6.2e-88 328.6 355 52.4
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 1.1e-87 327.8 315 55.9
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 1.4e-87 327.4 316 55.1
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 3.1e-87 326.2 361 51.5
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 5.3e-87 325.5 335 56.1
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 9.0e-87 324.7 317 54.6
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 9.0e-87 324.7 302 59.3
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 1.2e-86 324.3 319 55.5
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 9.9e-86 321.2 318 56.0
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 2.2e-85 320.1 302 54.6
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 6.4e-85 318.5 299 57.5
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 6.4e-85 318.5 358 50.8
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 8.4e-85 318.2 316 53.8
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 5.4e-84 315.5 313 54.6
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 2.7e-83 313.2 320 53.4
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 6.0e-83 312.0 319 53.6
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 1.3e-82 310.8 316 53.8
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 1.3e-82 310.8 313 54.0
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 3.0e-82 309.7 307 53.4
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 8.7e-82 308.1 342 50.6
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 3.3e-81 306.2 322 53.4
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 4.8e-80 302.4 341 49.0
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 1.8e-79 300.4 295 55.6
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 4.0e-79 299.3 320 50.6
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 9.0e-79 298.1 320 50.9
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 2.6e-78 296.6 358 46.6
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 4.9e-77 292.4 356 47.5
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 4.9e-77 292.4 356 47.5
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 8.4e-77 291.6 360 48.9
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 1.4e-76 290.8 314 52.5
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 4.2e-76 289.3 356 47.5
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 9.3e-76 288.1 379 45.9
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 9.3e-76 288.1 379 45.9
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 2.7e-75 286.6 313 51.8
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 6.0e-75 285.4 324 50.3
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 3.3e-73 279.6 346 47.7
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 1.3e-72 277.7 321 49.8
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 2.6e-70 270.0 357 46.5
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 2.2e-69 266.9 357 46.2
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 1.1e-68 264.6 360 46.7
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 2.5e-65 253.4 250 55.6
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 1.1e-63 248.1 314 45.9
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 4.1e-63 246.1 247 54.7
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 2.9e-61 240.0 262 50.4
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 1.6e-59 234.2 265 49.1
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 4.6e-59 232.6 313 41.9
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 8.8e-58 228.4 224 58.0
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 1.9e-52 210.7 245 48.6
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.9e-52 210.7 237 53.6
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.7e-51 206.8 214 53.3
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 3.6e-51 206.5 263 44.9
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 2.6e-46 190.3 316 36.4
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 2.1e-43 180.6 168 60.1
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 1.7e-40 171.0 204 49.0
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 2.5e-36 157.1 134 55.2
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 2.9e-29 133.7 142 50.7
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 2.2e-16 90.9 111 44.1
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 6.3e-16 89.4 102 48.0
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 7.8e-14 82.4 55 74.5
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 2.9e-13 80.5 245 28.2
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 5.0e-13 79.7 328 28.0
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 8.6e-13 79.0 55 70.9
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 3.3e-12 77.0 128 35.2
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 9.2e-07 58.9 267 25.1
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 3.5e-06 57.0 56 39.3
BcaNung04132 Brassica carinata HOM05D006655 ORTHO05D007986 4.6e-06 56.6 268 25.4
C07p58710 Brassica napus HOM05D006655 ORTHO05D007986 7.8e-06 55.8 266 24.8


User provided reference genes

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