Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 0.0e+00 1603.6 785 100.0
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 0.0e+00 1271.1 821 78.1
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1224.9 788 78.3
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 0.0e+00 1172.1 783 75.5
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1137.9 768 72.5
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1093.6 784 70.2
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1090.1 782 69.2
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1087.0 771 70.0
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1085.9 771 70.0
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1084.3 771 69.1
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1080.9 797 69.0
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1078.5 781 68.1
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1078.5 779 68.5
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1077.4 782 69.3
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1075.1 779 68.4
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 4.1e-310 1067.8 784 68.1
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.5e-309 1065.8 785 67.4
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 2.6e-309 1065.1 791 67.5
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 2.2e-308 1062.0 771 67.4
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 8.5e-308 1060.1 786 67.7
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 8.5e-308 1060.1 783 67.9
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 2.5e-307 1058.5 773 67.8
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 2.7e-306 1055.0 804 67.0
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 7.9e-306 1053.5 773 68.4
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 1.0e-305 1053.1 767 67.1
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 3.0e-305 1051.6 773 67.3
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 3.9e-305 1051.2 775 68.0
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 1.1e-304 1049.7 773 67.1
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 2.5e-304 1048.5 767 67.4
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 4.3e-304 1047.7 772 67.9
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 1.7e-303 1045.8 782 66.9
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 2.8e-303 1045.0 765 68.4
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 6.3e-303 1043.9 772 66.7
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.4e-302 1042.0 772 67.5
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 2.4e-302 1042.0 775 67.0
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 6.9e-302 1040.4 771 67.4
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 2.6e-301 1038.5 789 66.5
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 5.9e-301 1037.3 770 66.9
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 5.9e-301 1037.3 770 67.3
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 5.0e-300 1034.2 772 67.5
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 1.9e-299 1032.3 776 66.9
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 1.6e-298 1029.2 771 66.9
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 5.1e-297 1024.2 774 66.1
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 8.8e-297 1023.5 775 67.4
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 1.1e-296 1023.1 783 65.5
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 5.7e-296 1020.8 783 65.5
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 5.7e-296 1020.8 783 65.5
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 9.7e-296 1020.0 765 67.7
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.4e-294 1015.4 783 65.3
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.1e-294 1014.6 783 64.9
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 4.1e-294 1014.6 770 65.5
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.6e-293 1012.7 771 65.9
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 2.0e-293 1012.3 768 65.4
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.3e-292 1009.6 770 65.2
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 5.0e-292 1007.7 768 65.4
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.5e-292 1006.9 771 65.2
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 5.5e-291 1004.2 786 63.6
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 7.2e-291 1003.8 771 65.5
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 9.4e-291 1003.4 786 63.6
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.6e-290 1002.7 770 65.1
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 6.1e-290 1000.7 777 65.0
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 1.0e-289 1000.0 775 65.0
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.8e-289 999.2 773 65.3
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.0e-289 998.4 771 65.4
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 5.2e-289 997.7 781 63.6
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 6.7e-289 997.3 771 64.5
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.6e-288 995.3 770 65.1
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 6.3e-287 990.7 780 64.7
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 3.1e-286 988.4 789 62.6
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.3e-286 987.6 772 65.0
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 9.1e-286 986.9 756 65.1
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 1.3e-284 983.0 828 61.2
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.3e-284 983.0 780 62.6
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.3e-284 983.0 774 63.0
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.2e-283 978.4 770 64.0
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.6e-282 976.1 784 62.5
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 6.1e-282 974.2 781 63.9
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 1.8e-281 972.6 770 63.2
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.2e-280 969.9 778 62.7
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 5.7e-280 967.6 782 61.5
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 5.7e-280 967.6 785 62.0
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 1.7e-279 966.1 774 63.2
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.7e-279 966.1 773 63.8
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 2.2e-279 965.7 777 63.8
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.8e-278 962.6 780 63.1
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 2.4e-278 962.2 776 63.5
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.0e-276 956.8 785 63.4
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.0e-276 956.8 785 61.7
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.3e-276 956.4 767 61.8
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 5.0e-276 954.5 774 63.7
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 8.5e-276 953.7 776 63.4
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 8.5e-276 953.7 778 61.8
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.5e-275 953.0 733 67.9
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.5e-275 953.0 774 62.5
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 7.2e-275 950.7 775 62.6
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 2.7e-274 948.7 778 62.0
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 8.0e-274 947.2 766 62.0
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 3.0e-273 945.3 799 62.3
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 3.0e-273 945.3 784 62.1
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.5e-272 943.0 773 62.0
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 2.6e-272 942.2 734 63.8
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.1e-270 936.8 771 62.1
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 1.1e-270 936.8 779 62.3
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 9.2e-270 933.7 769 62.3
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 5.9e-269 931.0 767 62.2
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 3.3e-267 925.2 781 61.2
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 4.3e-267 924.9 789 61.0
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.6e-266 922.9 755 63.7
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 3.6e-266 921.8 766 61.5
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 2.3e-265 919.1 768 61.6
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.2e-265 917.9 760 62.6
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 8.9e-265 917.1 771 61.0
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 1.5e-264 916.4 771 60.8
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 2.2e-263 912.5 740 63.1
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 3.7e-263 911.8 783 58.9
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 4.9e-263 911.4 767 60.8
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.2e-261 906.7 769 59.0
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 2.0e-261 906.0 766 60.6
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 2.3e-260 902.5 760 60.5
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 1.1e-259 900.2 766 60.2
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.1e-257 892.1 775 59.6
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 8.9e-257 890.6 786 58.0
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 2.2e-255 885.9 764 59.9
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 5.0e-252 874.8 780 59.2
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 2.5e-251 872.5 773 59.1
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.1e-249 867.1 783 59.0
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 1.4e-249 866.7 789 58.3
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.4e-249 866.7 755 60.4
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 6.8e-249 864.4 721 61.7
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 2.2e-247 859.4 708 63.3
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 4.7e-242 841.6 782 57.3
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 5.2e-241 838.2 875 52.9
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 6.8e-241 837.8 775 55.9
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.8e-239 832.0 763 58.1
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 4.1e-238 828.6 776 56.6
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 4.1e-238 828.6 776 56.7
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.6e-210 736.9 682 58.1
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 2.8e-210 736.1 705 56.5
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 5.3e-185 652.1 777 46.6
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.8e-177 627.1 769 45.9
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.0e-176 623.6 733 47.1
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.8e-172 610.5 768 44.0
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.3e-170 604.4 761 44.2
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 6.3e-170 602.1 760 46.3
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.9e-159 566.6 443 65.0
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 4.4e-155 552.7 403 67.5
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 4.4e-155 552.7 403 67.5
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 2.8e-154 550.1 745 42.0
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 7.8e-152 542.0 410 66.3
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.0e-139 500.7 403 62.3
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.5e-134 484.6 589 46.2
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 2.4e-129 467.2 263 81.0
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.1e-120 437.6 251 79.7
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.0e-119 433.7 463 52.5
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 6.9e-108 396.0 448 47.5
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 8.1e-101 372.5 749 34.0
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 7.2e-73 279.6 279 53.0
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 6.1e-72 276.6 761 30.5
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.9e-57 228.4 280 45.7
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 5.5e-57 226.9 183 61.2
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 6.8e-47 193.4 152 61.2
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.1e-40 171.8 93 79.6
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 4.9e-37 160.6 144 59.0
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.5e-33 149.1 76 82.9
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.8e-24 118.2 165 41.2
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 7.5e-22 110.2 66 81.8
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 8.6e-18 96.7 135 37.0
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 1.9e-12 79.0 74 54.1
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 7.1e-12 77.0 103 40.8
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 7.8e-11 73.6 108 41.7
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 3.0e-10 71.6 101 41.6


User provided reference genes

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