Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.5e-209 731.9 365 100.0
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 1.1e-148 530.4 354 72.9
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 1.4e-148 530.0 354 74.3
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 2.4e-148 529.3 354 74.9
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 5.4e-148 528.1 353 74.5
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 7.0e-148 527.7 353 74.2
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 1.6e-147 526.6 353 75.1
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.6e-147 526.6 353 74.2
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 1.6e-147 526.6 354 74.0
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 2.0e-147 526.2 353 74.5
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 2.0e-147 526.2 353 74.8
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 3.5e-147 525.4 353 72.8
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 7.8e-147 524.2 354 73.2
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 1.0e-146 523.9 353 73.7
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 1.3e-146 523.5 353 74.5
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 2.3e-146 522.7 354 73.2
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 3.0e-146 522.3 354 74.0
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 3.0e-146 522.3 353 73.7
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 3.9e-146 521.9 354 73.2
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 5.0e-146 521.5 354 72.3
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 5.0e-146 521.5 353 73.4
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 5.0e-146 521.5 354 73.7
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 6.6e-146 521.2 353 72.8
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 6.6e-146 521.2 354 74.0
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 6.6e-146 521.2 353 72.8
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 8.6e-146 520.8 353 73.4
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.1e-145 520.4 353 72.0
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 1.1e-145 520.4 353 72.0
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.9e-145 519.6 353 73.4
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.9e-145 519.6 353 73.1
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 4.3e-145 518.5 353 73.1
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 4.3e-145 518.5 354 73.4
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 7.3e-145 517.7 353 73.1
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 7.3e-145 517.7 353 73.4
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 7.3e-145 517.7 353 73.4
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 7.3e-145 517.7 353 73.7
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 7.3e-145 517.7 353 73.1
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 7.3e-145 517.7 353 71.7
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 9.5e-145 517.3 353 71.4
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 2.1e-144 516.2 351 73.2
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 2.8e-144 515.8 354 71.8
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 2.8e-144 515.8 353 72.0
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 2.8e-144 515.8 353 72.0
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 3.6e-144 515.4 353 72.8
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 3.6e-144 515.4 353 72.8
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.7e-144 515.0 353 72.8
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 4.7e-144 515.0 353 72.8
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 4.7e-144 515.0 353 72.8
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 4.7e-144 515.0 354 72.3
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.2e-144 514.6 353 72.8
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.2e-144 514.6 353 72.8
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 8.0e-144 514.2 353 72.5
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 1.4e-143 513.5 353 72.2
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 1.4e-143 513.5 354 70.9
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.8e-143 513.1 353 72.2
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 3.1e-143 512.3 353 72.8
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 1.2e-142 510.4 353 72.2
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 4.4e-142 508.4 354 70.3
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 7.5e-142 507.7 353 71.7
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 7.5e-142 507.7 353 72.8
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.3e-141 506.9 354 70.1
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 1.7e-141 506.5 356 69.7
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 2.2e-141 506.1 352 71.0
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 6.4e-141 504.6 353 71.1
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 8.3e-141 504.2 355 71.3
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 8.3e-141 504.2 353 70.8
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.9e-140 503.1 353 70.8
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 4.1e-140 501.9 353 70.8
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 5.4e-140 501.5 353 70.5
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 5.4e-140 501.5 354 69.2
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 7.1e-140 501.1 353 70.8
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 7.1e-140 501.1 353 70.8
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 7.1e-140 501.1 353 70.8
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 7.1e-140 501.1 353 70.8
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 9.2e-140 500.7 353 70.5
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 2.1e-139 499.6 353 71.1
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 2.7e-139 499.2 354 70.3
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 2.7e-139 499.2 354 69.8
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 4.6e-139 498.4 354 69.8
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 6.0e-139 498.0 354 69.8
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 3.0e-138 495.7 354 69.5
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 3.0e-138 495.7 352 70.2
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 6.6e-138 494.6 354 70.3
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 8.6e-138 494.2 353 70.0
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 8.6e-138 494.2 353 70.0
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.5e-137 493.4 353 70.3
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.9e-137 493.0 353 69.7
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 2.5e-137 492.7 353 70.0
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 5.6e-137 491.5 358 70.1
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 5.6e-137 491.5 353 69.7
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 2.8e-136 489.2 349 70.2
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 4.0e-135 485.3 345 70.1
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 5.8e-134 481.5 451 58.1
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.4e-132 476.9 353 69.1
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.4e-132 476.1 342 69.0
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 1.1e-129 467.2 324 72.2
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 4.3e-129 465.3 322 72.7
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.6e-128 463.4 328 71.3
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 3.6e-128 462.2 343 68.2
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 3.6e-128 462.2 334 69.5
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 6.8e-127 458.0 331 68.3
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 9.9e-126 454.1 353 64.9
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 1.3e-125 453.8 353 63.5
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 2.2e-125 453.0 353 64.3
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 3.9e-122 442.2 354 65.8
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 1.5e-121 440.3 353 63.7
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 1.3e-120 437.2 354 61.9
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 3.6e-120 435.6 429 55.9
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 3.8e-117 425.6 297 70.0
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.9e-117 425.2 351 62.7
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 3.8e-109 399.1 274 71.9
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 2.5e-105 386.3 266 72.6
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.1e-104 383.3 353 60.6
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 8.7e-98 361.3 260 71.5
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 7.4e-97 358.2 267 67.4
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 9.6e-97 357.8 253 71.5
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 6.9e-95 351.7 261 69.0
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 8.4e-93 344.7 267 66.7
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 5.7e-81 305.4 221 71.9
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 5.9e-70 268.9 177 73.4
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 1.3e-69 267.7 346 43.9
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 5.0e-69 265.8 351 42.2
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 1.3e-64 251.1 174 73.0
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 4.5e-62 242.7 160 75.6
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.8e-58 228.8 145 73.8
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 5.2e-50 202.6 350 35.1
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 9.8e-49 198.4 138 71.0
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 6.3e-48 195.7 120 73.3
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 9.2e-47 191.8 353 39.4
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 2.3e-42 177.2 387 34.4
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.9e-36 157.5 103 69.9
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.5e-28 131.3 109 66.1
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 3.6e-27 126.7 75 82.7
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 6.8e-26 122.5 128 49.2
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 3.4e-25 120.2 90 66.7
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 9.2e-23 112.1 104 56.7
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 2.1e-22 110.9 80 61.2
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 2.7e-22 110.5 102 56.9
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 1.0e-21 108.6 75 69.3
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 1.0e-21 108.6 75 69.3
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 1.0e-21 108.6 75 69.3
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 5.1e-21 106.3 201 34.3
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 3.3e-20 103.6 70 77.1
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 4.3e-20 103.2 75 65.3
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 4.3e-20 103.2 75 65.3
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 1.6e-19 101.3 75 64.0
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 8.1e-19 99.0 62 79.0
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 5.4e-15 86.3 80 58.8
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 6.6e-13 79.3 43 90.7
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 1.6e-11 74.7 82 50.0
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 4.7e-11 73.2 70 60.0
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 1.7e-08 64.7 67 49.3
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 5.4e-07 59.7 35 74.3
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 3.5e-06 57.0 35 71.4
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 3.5e-06 57.0 36 77.8


User provided reference genes

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