Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.5e-308 1062.0 545 100.0
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.8e-203 713.0 542 69.0
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 6.9e-200 701.0 542 67.3
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.6e-199 699.1 542 68.3
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.7e-174 616.7 542 60.0
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 2.9e-174 615.9 554 59.6
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 2.5e-173 612.8 556 60.8
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 7.2e-173 611.3 555 60.0
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 5.7e-170 601.7 557 59.2
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 2.2e-169 599.7 554 59.2
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.8e-169 599.4 557 59.1
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 3.7e-169 599.0 559 58.3
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.8e-168 596.7 540 59.6
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 2.4e-168 596.3 555 59.1
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.1e-168 595.5 557 58.9
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 7.0e-168 594.7 503 62.6
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 1.6e-167 593.6 553 58.6
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.3e-166 590.5 553 57.7
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.7e-166 590.1 554 58.3
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.3e-166 589.7 512 61.1
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 2.3e-166 589.7 552 57.8
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.8e-166 589.0 512 60.7
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 6.5e-166 588.2 512 60.7
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.5e-165 587.0 502 62.0
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 1.5e-165 587.0 560 56.8
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.9e-165 586.6 533 58.3
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 7.2e-165 584.7 512 60.9
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 7.2e-165 584.7 554 57.8
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.6e-164 583.6 511 61.6
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 2.1e-164 583.2 556 57.2
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 2.8e-164 582.8 506 60.7
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 6.1e-164 581.6 515 60.0
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.1e-164 581.6 520 59.8
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.0e-163 580.9 551 57.7
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 1.0e-163 580.9 525 59.6
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.0e-163 578.9 515 59.6
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 8.9e-163 577.8 515 59.6
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 5.7e-162 575.1 591 55.2
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 7.5e-162 574.7 489 60.9
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 9.8e-162 574.3 554 57.4
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 9.8e-162 574.3 499 61.7
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 9.8e-162 574.3 504 60.5
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.3e-161 573.9 518 59.3
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.7e-161 573.5 554 57.0
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 2.2e-161 573.2 502 60.6
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 2.8e-161 572.8 514 58.8
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.1e-160 570.9 554 57.6
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.1e-160 570.9 578 56.1
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.4e-160 570.5 547 56.7
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.8e-160 570.1 555 55.3
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 9.2e-160 567.8 501 62.1
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 9.2e-160 567.8 556 56.7
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.2e-159 567.4 563 54.9
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.6e-159 567.0 539 57.0
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 3.5e-159 565.8 527 59.6
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 3.5e-159 565.8 555 55.0
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 3.5e-159 565.8 517 58.4
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 4.5e-159 565.5 552 55.4
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 5.9e-159 565.1 555 55.0
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 5.9e-159 565.1 553 55.0
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 5.9e-159 565.1 553 55.0
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 5.9e-159 565.1 504 59.3
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 7.8e-159 564.7 553 55.5
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.0e-158 564.3 503 59.2
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.0e-158 564.3 503 59.2
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.3e-158 563.9 553 55.0
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.3e-158 563.9 489 61.6
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 2.9e-158 562.8 552 55.6
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 2.9e-158 562.8 502 59.2
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 6.6e-158 561.6 491 61.7
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 8.6e-158 561.2 545 54.9
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 1.1e-157 560.8 501 58.9
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.1e-157 560.8 498 59.2
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 4.3e-157 558.9 517 57.1
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 4.3e-157 558.9 503 58.1
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 5.6e-157 558.5 550 54.9
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 7.3e-157 558.1 550 55.1
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 9.5e-157 557.8 515 57.9
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.6e-156 557.0 552 54.9
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.1e-156 556.6 493 59.4
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 2.8e-156 556.2 638 50.2
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 4.7e-156 555.4 545 57.6
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 6.1e-156 555.1 553 54.6
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 6.1e-156 555.1 502 58.2
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.0e-155 554.3 498 59.4
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.8e-155 553.5 511 56.9
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.3e-155 553.1 497 58.4
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 5.2e-155 552.0 498 59.2
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 8.9e-155 551.2 547 54.5
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 1.7e-153 547.0 542 55.2
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 3.5e-151 539.3 498 57.4
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 1.5e-149 533.9 476 59.5
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 4.3e-149 532.3 482 58.3
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 7.3e-149 531.6 503 56.7
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 3.1e-147 526.2 520 54.4
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 5.8e-146 521.9 506 53.6
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.7e-145 520.4 493 57.0
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 3.2e-144 516.2 578 50.7
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 4.6e-143 512.3 615 49.6
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.0e-142 511.1 473 58.4
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.4e-138 496.1 468 55.8
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.4e-136 490.7 513 51.9
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 9.2e-136 488.0 492 51.2
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 5.6e-133 478.8 468 56.8
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 2.4e-123 446.8 403 60.5
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.5e-122 444.1 542 47.6
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 4.4e-122 442.6 445 55.5
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-121 441.0 414 57.5
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 2.6e-114 416.8 499 46.7
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.7e-113 414.1 405 56.3
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 3.8e-113 412.9 424 53.1
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 6.0e-111 405.6 477 48.4
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 3.3e-109 399.8 497 45.9
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 9.0e-107 391.7 495 46.5
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.0e-98 364.0 504 45.2
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.7e-97 360.9 366 52.5
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.4e-88 331.3 279 63.8
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 4.2e-88 329.7 421 48.0
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 6.5e-73 279.3 370 46.5
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.6e-66 258.1 518 35.3
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.4e-59 235.0 425 39.1
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 1.2e-58 231.9 243 53.9
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 5.9e-58 229.6 506 34.2
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 5.9e-58 229.6 460 37.4
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 4.2e-56 223.4 205 57.1
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 5.4e-51 206.5 404 33.7
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-46 191.4 156 64.7
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.8e-43 181.4 512 32.2
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.4e-35 155.2 206 40.8
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 1.6e-31 141.7 258 34.9
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 3.7e-28 130.6 92 70.7
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.7e-26 124.4 98 64.3
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 3.4e-21 107.5 135 47.4
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.3e-17 94.7 381 25.7
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 9.9e-13 79.3 65 63.1
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 3.8e-12 77.4 45 75.6
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 1.9e-11 75.1 49 77.6
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.2e-11 74.3 85 50.6
AagrBONN_evm.TU.Sc2ySwM_117.3274 Anthoceros agrestis HOM05D002878 ORTHO05D011490 2.1e-07 61.6 244 28.7
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-06 59.3 66 54.5


User provided reference genes

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