Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05637 Selenicereus undatus HOM05D005797 ORTHO05D006479 3.2e-215 751.5 387 100.0
Hund05629 Selenicereus undatus HOM05D005797 ORTHO05D006479 3.5e-145 518.8 547 55.0
Hund05636 Selenicereus undatus HOM05D005797 ORTHO05D006479 4.1e-130 468.8 660 44.8
Hund05642 Selenicereus undatus HOM05D005797 ORTHO05D006479 1.1e-95 354.4 246 74.0
Hund25725 Selenicereus undatus HOM05D005797 ORTHO05D006479 3.2e-66 256.5 149 85.9
Hund18537 Selenicereus undatus HOM05D005797 ORTHO05D006479 4.4e-47 193.0 508 29.7
AUR62001271 Chenopodium quinoa HOM05D005797 ORTHO05D006479 2.6e-39 167.2 488 29.3
GSVIVG01007552001 Vitis vinifera HOM05D005797 ORTHO05D006479 1.4e-37 161.4 538 27.1
AUR62025735 Chenopodium quinoa HOM05D005797 ORTHO05D006479 2.0e-36 157.5 516 28.5
Sopen03g003130 Solanum pennellii HOM05D005797 ORTHO05D006479 4.4e-31 139.8 454 26.4
EL10Ac7g18068 Beta vulgaris HOM05D005797 ORTHO05D006479 1.1e-29 135.2 553 26.6
Eucgr.K02760 Eucalyptus grandis HOM05D005797 ORTHO05D006479 1.4e-29 134.8 498 25.3
Solyc03g007140.3 Solanum lycopersicum HOM05D005797 ORTHO05D006479 3.1e-29 133.7 453 25.6
PGSC0003DMG400031024 Solanum tuberosum HOM05D005797 ORTHO05D006479 4.1e-29 133.3 461 25.2
Dinv38477 Davidia involucrata HOM05D005797 ORTHO05D006479 1.2e-28 131.7 166 41.0
Haze_07281 Corylus avellana HOM05D005797 ORTHO05D006479 2.7e-28 130.6 497 27.8
Peaxi162Scf00536g00111 Petunia axillaris HOM05D005797 ORTHO05D006479 2.2e-27 127.5 423 25.8
Nitab4.5_0010931g0020 Nicotiana tabacum HOM05D005797 ORTHO05D006479 6.5e-27 125.9 478 25.5
CsaV3_1G009280 Cucumis sativus L. HOM05D005797 ORTHO05D006479 1.1e-26 125.2 562 25.3
CiPaw.11G012700 Carya illinoinensis HOM05D005797 ORTHO05D006479 3.6e-25 120.2 109 50.5
EL10Ac7g18067 Beta vulgaris HOM05D005797 ORTHO05D006479 2.3e-24 117.5 418 29.9
CSS0028554 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 4.0e-24 116.7 534 23.6
CANSAT80G2591 Cannabis sativa HOM05D005797 ORTHO05D006479 4.0e-24 116.7 570 22.1
QL10p005358 Quercus lobata HOM05D005797 ORTHO05D006479 5.2e-24 116.3 105 52.4
Nn4g22471 Nelumbo nucifera HOM05D005797 ORTHO05D006479 1.5e-23 114.8 588 24.0
PGSC0003DMG400031023 Solanum tuberosum HOM05D005797 ORTHO05D006479 2.0e-23 114.4 321 27.4
Lj5A100T65 Lonicera japonica HOM05D005797 ORTHO05D006479 1.7e-22 111.3 112 46.4
Nitab4.5_0003282g0040 Nicotiana tabacum HOM05D005797 ORTHO05D006479 1.7e-22 111.3 519 23.7
Nn3g16589 Nelumbo nucifera HOM05D005797 ORTHO05D006479 6.3e-22 109.4 174 36.8
PGSC0003DMG401015175 Solanum tuberosum HOM05D005797 ORTHO05D006479 8.3e-22 109.0 508 22.8
ClCG03G003480 Citrullus lanatus HOM05D005797 ORTHO05D006479 1.4e-21 108.2 104 50.0
Sc10g0010330 Simmondsia chinensis HOM05D005797 ORTHO05D006479 1.4e-21 108.2 105 51.4
CAN.G1022.5 Capsicum annuum HOM05D005797 ORTHO05D006479 1.8e-21 107.8 295 26.4
CAN.G1022.3 Capsicum annuum HOM05D005797 ORTHO05D006479 2.4e-21 107.5 484 23.6
Sabra12G0067900 Salix brachista HOM05D005797 ORTHO05D006479 2.4e-21 107.5 105 48.6
MELO3C002331.2 Cucumis melo HOM05D005797 ORTHO05D006479 4.1e-21 106.7 104 50.0
Ciclev10019558m.g Citrus clementina HOM05D005797 ORTHO05D006479 7.0e-21 105.9 105 48.6
Nitab4.5_0010042g0010 Nicotiana tabacum HOM05D005797 ORTHO05D006479 7.0e-21 105.9 518 23.6
TAR629G0979 Trochodendron aralioides HOM05D005797 ORTHO05D006479 7.0e-21 105.9 108 48.1
QL05p054837 Quercus lobata HOM05D005797 ORTHO05D006479 2.0e-20 104.4 108 46.3
Atru.chr9.1003 Acer truncatum HOM05D005797 ORTHO05D006479 2.7e-20 104.0 106 46.2
Sed0007512 Sechium edule HOM05D005797 ORTHO05D006479 3.5e-20 103.6 105 49.5
Sed0027282 Sechium edule HOM05D005797 ORTHO05D006479 4.5e-20 103.2 102 51.0
Solyc03g111410.3 Solanum lycopersicum HOM05D005797 ORTHO05D006479 5.9e-20 102.8 345 27.0
CAN.G769.1 Capsicum annuum HOM05D005797 ORTHO05D006479 7.7e-20 102.4 485 24.5
Prupe.5G157600 Prunus persica HOM05D005797 ORTHO05D006479 1.0e-19 102.1 113 48.7
Potri.012G093200 Populus trichocarpa HOM05D005797 ORTHO05D006479 1.3e-19 101.7 105 46.7
RcHm_v2.0_Chr7g0191351 Rosa chinensis HOM05D005797 ORTHO05D006479 1.7e-19 101.3 100 48.0
Sopen03g030540 Solanum pennellii HOM05D005797 ORTHO05D006479 3.8e-19 100.1 345 27.0
Cc04_g10490 Coffea canephora HOM05D005797 ORTHO05D006479 5.0e-19 99.8 114 44.7
Lalb_Chr23g0273471 Lupinus albus HOM05D005797 ORTHO05D006479 8.6e-19 99.0 105 42.9
Lsat_1_v5_gn_4_78921 Lactuca sativa HOM05D005797 ORTHO05D006479 1.1e-18 98.6 105 44.8
FAN08G2881 Fragaria x ananassa HOM05D005797 ORTHO05D006479 1.9e-18 97.8 105 43.8
CAN.G352.1 Capsicum annuum HOM05D005797 ORTHO05D006479 2.5e-18 97.4 347 23.9
MD06G1157600 Malus domestica HOM05D005797 ORTHO05D006479 2.5e-18 97.4 105 45.7
FAN13G0931 Fragaria x ananassa HOM05D005797 ORTHO05D006479 4.2e-18 96.7 105 42.9
Rhsim01G0114700 Rhododendron simsii HOM05D005797 ORTHO05D006479 4.2e-18 96.7 99 45.5
TWI39G1083 Tripterygium wilfordii HOM05D005797 ORTHO05D006479 7.2e-18 95.9 105 43.8
vmacro21190 Vaccinium macrocarpon HOM05D005797 ORTHO05D006479 9.5e-18 95.5 115 45.2
MSTRG.9312 Avicennia marina HOM05D005797 ORTHO05D006479 2.8e-17 94.0 105 42.9
ECA232G3585 Erigeron canadensis HOM05D005797 ORTHO05D006479 2.8e-17 94.0 106 42.5
FAN04G0892 Fragaria x ananassa HOM05D005797 ORTHO05D006479 2.8e-17 94.0 105 41.0
Sopen03g030640 Solanum pennellii HOM05D005797 ORTHO05D006479 2.8e-17 94.0 100 42.0
Ciclev10023279m.g Citrus clementina HOM05D005797 ORTHO05D006479 4.7e-17 93.2 81 53.1
Solyc03g111500.3 Solanum lycopersicum HOM05D005797 ORTHO05D006479 4.7e-17 93.2 100 42.0
FvH4_5g07280 Fragaria vesca HOM05D005797 ORTHO05D006479 6.1e-17 92.8 105 41.9
FAN18G3318 Fragaria x ananassa HOM05D005797 ORTHO05D006479 6.1e-17 92.8 105 41.9
PGR044G0013 Punica granatum HOM05D005797 ORTHO05D006479 8.0e-17 92.4 101 42.6
Aqoxy3G01381 Aquilegia oxysepala HOM05D005797 ORTHO05D006479 1.4e-16 91.7 112 42.0
PSO063G1422 Papaver somniferum HOM05D005797 ORTHO05D006479 4.0e-16 90.1 103 38.8
Nitab4.5_0002062g0010 Nicotiana tabacum HOM05D005797 ORTHO05D006479 1.2e-15 88.6 127 39.4
PSO478G0449 Papaver somniferum HOM05D005797 ORTHO05D006479 1.5e-15 88.2 116 39.7
CAN.G472.30 Capsicum annuum HOM05D005797 ORTHO05D006479 2.6e-15 87.4 103 40.8
CSS0021207 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 3.4e-15 87.0 127 40.9
CSS0032554 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 3.4e-15 87.0 127 40.9
CSS0013181 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 3.7e-14 83.6 76 48.7
CSS0048062 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 8.3e-14 82.4 81 49.4
RcHm_v2.0_Chr2g0149281 Rosa chinensis HOM05D005797 ORTHO05D006479 1.1e-13 82.0 105 36.2
Glyma.04G192400 Glycine max HOM05D005797 ORTHO05D006479 1.8e-13 81.3 94 42.6
Prupe.5G155300 Prunus persica HOM05D005797 ORTHO05D006479 1.8e-13 81.3 113 43.4
Psat5g141720 Pisum sativum HOM05D005797 ORTHO05D006479 4.1e-13 80.1 105 38.1
PGSC0003DMG400034759 Solanum tuberosum HOM05D005797 ORTHO05D006479 4.1e-13 80.1 94 39.4
PGSC0003DMG400044028 Solanum tuberosum HOM05D005797 ORTHO05D006479 4.1e-13 80.1 94 38.3
Ca_16094_v3 Cicer arietinum L. HOM05D005797 ORTHO05D006479 5.4e-13 79.7 105 39.0
arahy.Tifrunner.gnm1.ann1.7Y7E6F Arachis hypogaea HOM05D005797 ORTHO05D006479 1.6e-12 78.2 101 35.6
Peaxi162Scf00089g00723 Petunia axillaris HOM05D005797 ORTHO05D006479 2.0e-12 77.8 138 31.9
TAR381G0348 Trochodendron aralioides HOM05D000823 ORTHO05D000088 3.5e-12 77.0 333 25.2
PGSC0003DMG400046794 Solanum tuberosum HOM05D005797 ORTHO05D006479 7.8e-12 75.9 94 37.2
Nn5g28071 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.0e-11 75.5 305 24.6
CDE09G0812 Ceratophyllum demersum HOM05D005797 ORTHO05D006479 1.3e-11 75.1 115 33.9
VMungo1309G1346 Vigna mungo HOM05D005797 ORTHO05D006479 3.9e-11 73.6 96 42.7
SEGI_06639 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 5.0e-11 73.2 112 35.7
SEGI_41472 Sequoiadendron giganteum HOM05D000823 ORTHO05D006479 5.0e-11 73.2 112 35.7
DCAR_005590 Daucus carota HOM05D001479 ORTHO05D006479 8.6e-11 72.4 99 36.4
Os01g0905400 Oryza sativa ssp. japonica HOM05D005797 ORTHO05D006479 1.1e-10 72.0 108 33.3
Prupe.4G178200 Prunus persica HOM05D000823 ORTHO05D000088 1.1e-10 72.0 310 23.9
TAR626G0173 Trochodendron aralioides HOM05D005797 ORTHO05D006479 1.1e-10 72.0 51 58.8
arahy.Tifrunner.gnm1.ann1.NX8KLK Arachis hypogaea HOM05D005797 ORTHO05D006479 1.5e-10 71.6 101 32.7
MBI16_g19885_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 2.5e-10 70.9 334 25.4
TAR625G0462 Trochodendron aralioides HOM05D000823 ORTHO05D000088 2.5e-10 70.9 316 24.4
unitig_699.g19758 Utricularia gibba HOM05D005797 ORTHO05D006479 2.5e-10 70.9 75 42.7
HanXRQChr16g0497931 Helianthus annuus HOM05D005797 ORTHO05D006479 3.3e-10 70.5 98 36.7
SEGI_17947 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 3.3e-10 70.5 325 25.2
Migut.O00498 Erythranthe guttata HOM05D005797 ORTHO05D006479 4.3e-10 70.1 98 35.7
Zm00001eb144270 Zea mays HOM05D005797 ORTHO05D006479 4.3e-10 70.1 114 36.0
Lj7C16T11 Lonicera japonica HOM05D000395 ORTHO05D000088 7.3e-10 69.3 325 24.0
Solyc10g053890.2 Solanum lycopersicum HOM05D005797 ORTHO05D006479 7.3e-10 69.3 92 37.0
MBI11_g20093_MAGBIO Magnolia biondii HOM05D005797 ORTHO05D006479 9.5e-10 68.9 83 38.6
SEGI_11266 Sequoiadendron giganteum HOM05D005797 ORTHO05D000088 9.5e-10 68.9 96 39.6
SEGI_16266 Sequoiadendron giganteum HOM05D005797 ORTHO05D006479 9.5e-10 68.9 100 42.0
Nn6g32142 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.2e-09 68.6 307 25.7
SEGI_02705 Sequoiadendron giganteum HOM05D000823 ORTHO05D006479 1.6e-09 68.2 100 38.0
Phvul.009G169300 Phaseolus vulgaris HOM05D005797 ORTHO05D006479 2.1e-09 67.8 96 39.6
SEGI_04570 Sequoiadendron giganteum HOM05D005797 ORTHO05D006479 3.6e-09 67.0 103 38.8
SEGI_19492 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 3.6e-09 67.0 103 38.8
SEGI_32289 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 3.6e-09 67.0 100 39.0
PGSC0003DMG400046008 Solanum tuberosum HOM05D005797 ORTHO05D006479 3.6e-09 67.0 79 36.7
HPP92_021432 Vanilla planifolia HOM05D022286 ORTHO05D006479 3.6e-09 67.0 84 44.0
Actinidia36524 Actinidia chinensis HOM05D001349 ORTHO05D001980 8.0e-09 65.9 312 23.7
SEGI_02633 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 8.0e-09 65.9 100 38.0
SEGI_17863 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 8.0e-09 65.9 362 22.9
DCAR_007694 Daucus carota HOM05D005797 ORTHO05D006479 1.0e-08 65.5 63 44.4
QL02p006491 Quercus lobata HOM05D000823 ORTHO05D000088 1.0e-08 65.5 306 25.2
SEGI_07734 Sequoiadendron giganteum HOM05D005797 ORTHO05D006479 1.0e-08 65.5 100 37.0
SEGI_28063 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 1.0e-08 65.5 341 23.2
SEGI_15671 Sequoiadendron giganteum HOM05D005797 ORTHO05D006479 1.4e-08 65.1 100 37.0
Gohir.A02G160700 Gossypium hirsutum HOM05D000823 ORTHO05D000088 1.8e-08 64.7 77 44.2
SGA_v2.0_scaffold172G39027 Striga asiatica HOM05D005797 ORTHO05D006479 1.8e-08 64.7 114 33.3
SEGI_21306 Sequoiadendron giganteum HOM05D000004 ORTHO05D006479 2.3e-08 64.3 100 37.0
ATR0923G004 Amborella trichopoda HOM05D000823 ORTHO05D000088 3.1e-08 63.9 82 39.0
ATR1132G056 Amborella trichopoda HOM05D000823 ORTHO05D000088 4.0e-08 63.5 103 34.0
Gohir.A02G160800 Gossypium hirsutum HOM05D000823 ORTHO05D010235 4.0e-08 63.5 80 42.5
Gohir.D03G019700 Gossypium hirsutum HOM05D000823 ORTHO05D010235 4.0e-08 63.5 80 42.5
Gorai.003G020400 Gossypium raimondii HOM05D000823 ORTHO05D010235 4.0e-08 63.5 80 42.5
SEGI_23984 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 4.0e-08 63.5 366 23.5
SEGI_34521 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 4.0e-08 63.5 100 35.0
TAR376G0714 Trochodendron aralioides HOM05D000823 ORTHO05D000088 4.0e-08 63.5 302 25.5
arahy.Tifrunner.gnm1.ann1.58L4GY Arachis hypogaea HOM05D000395 ORTHO05D000088 5.2e-08 63.2 327 23.5
SEGI_18580 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 5.2e-08 63.2 110 32.7
TPR.G26145 Trifolium pratense HOM05D005797 ORTHO05D006479 6.8e-08 62.8 103 34.0
QL06p036952 Quercus lobata HOM05D000395 ORTHO05D000088 8.9e-08 62.4 358 22.6
SEGI_01735 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 8.9e-08 62.4 94 39.4
Thecc.01G047300 Theobroma cacao HOM05D000823 ORTHO05D000088 8.9e-08 62.4 299 24.4
arahy.Tifrunner.gnm1.ann1.CA68NU Arachis hypogaea HOM05D000395 ORTHO05D000088 1.5e-07 61.6 318 21.7
HPP92_027093 Vanilla planifolia HOM05D022286 ORTHO05D006479 1.5e-07 61.6 110 30.9
Oeu011581.1 Olea europaea HOM05D005797 ORTHO05D006479 2.0e-07 61.2 140 31.4
Atru.chr5.2850 Acer truncatum HOM05D000395 ORTHO05D000088 2.6e-07 60.8 79 36.7
FAN08G1659 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.6e-07 60.8 77 44.2
Nn3g16591 Nelumbo nucifera HOM05D005797 ORTHO05D006479 2.6e-07 60.8 60 45.0
FAN04G2451 Fragaria x ananassa HOM05D000823 ORTHO05D000088 3.4e-07 60.5 77 44.2
Prupe.4G206300 Prunus persica HOM05D000823 ORTHO05D000088 3.4e-07 60.5 75 40.0
Dinv26758 Davidia involucrata HOM05D000823 ORTHO05D000088 4.4e-07 60.1 310 22.6
Gorai.003G020700 Gossypium raimondii HOM05D000823 ORTHO05D000088 5.8e-07 59.7 77 41.6
PGSC0003DMG400035342 Solanum tuberosum HOM05D005797 ORTHO05D006479 5.8e-07 59.7 57 40.4
Cpa.g.sc7.145 Carica papaya HOM05D000823 ORTHO05D000088 7.5e-07 59.3 83 41.0
SalBow1G3539 Salvia bowleyana HOM05D005797 ORTHO05D006479 7.5e-07 59.3 74 39.2
CAN.G760.5 Capsicum annuum HOM05D005797 ORTHO05D006479 9.8e-07 58.9 60 38.3
Lj7A19G27 Lonicera japonica HOM05D000395 ORTHO05D000088 9.8e-07 58.9 302 23.8
Prupe.1G388200 Prunus persica HOM05D000823 ORTHO05D000088 9.8e-07 58.9 340 24.7
Manes.13G130800 Manihot esculenta HOM05D000823 ORTHO05D000088 1.3e-06 58.5 76 39.5
Haze_08009 Corylus avellana HOM05D000823 ORTHO05D000088 1.7e-06 58.2 308 24.0
MD03G1230100 Malus domestica HOM05D000823 ORTHO05D000088 1.7e-06 58.2 80 41.2
Nn5g29400 Nelumbo nucifera HOM05D000823 ORTHO05D000088 2.2e-06 57.8 361 20.5
Nitab4.5_0002280g0040 Nicotiana tabacum HOM05D000823 ORTHO05D000088 2.2e-06 57.8 318 23.3
PGSC0003DMG400037834 Solanum tuberosum HOM05D005797 ORTHO05D006479 2.2e-06 57.8 58 37.9
Actinidia19380 Actinidia chinensis HOM05D005797 ORTHO05D006479 2.9e-06 57.4 59 40.7
FAN13G1961 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.9e-06 57.4 77 42.9
Gorai.007G209200 Gossypium raimondii HOM05D000395 ORTHO05D000088 3.7e-06 57.0 321 22.7
TAR628G1487 Trochodendron aralioides HOM05D000823 ORTHO05D000088 3.7e-06 57.0 80 37.5
Gohir.D03G019725 Gossypium hirsutum HOM05D000823 ORTHO05D010235 4.9e-06 56.6 80 38.8
Gorai.003G020600 Gossypium raimondii HOM05D000823 ORTHO05D010235 4.9e-06 56.6 80 38.8
Nn5g29401 Nelumbo nucifera HOM05D000823 ORTHO05D000088 4.9e-06 56.6 79 36.7
QL05p019978 Quercus lobata HOM05D000395 ORTHO05D000088 4.9e-06 56.6 334 23.4
QL10p055235 Quercus lobata HOM05D000395 ORTHO05D000088 4.9e-06 56.6 334 23.4
FvH4_5g30470 Fragaria vesca HOM05D000823 ORTHO05D000088 6.4e-06 56.2 77 41.6
Prupe.4G178100 Prunus persica HOM05D000823 ORTHO05D000088 6.4e-06 56.2 78 35.9
SEGI_12498 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 6.4e-06 56.2 356 22.8
arahy.Tifrunner.gnm1.ann1.F6NJQK Arachis hypogaea HOM05D000395 ORTHO05D000088 8.3e-06 55.8 326 21.5


User provided reference genes

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