Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 0.0e+00 1231.1 686 100.0
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.1e-247 860.1 608 78.9
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.1e-245 853.6 667 72.7
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 3.4e-220 768.8 578 75.4
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 1.1e-207 727.2 658 64.6
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 3.1e-205 719.2 640 65.0
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 1.7e-203 713.4 648 60.8
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 1.6e-201 706.8 640 63.8
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.8e-200 703.4 634 64.7
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 8.7e-200 701.0 641 63.5
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 2.8e-198 696.0 656 63.3
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 3.7e-198 695.7 656 63.3
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 6.3e-198 694.9 674 58.5
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 1.1e-197 694.1 650 62.0
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 3.1e-197 692.6 656 63.1
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 4.5e-196 688.7 634 65.0
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 3.8e-195 685.6 622 65.4
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 3.6e-193 679.1 639 58.4
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.9e-193 677.9 648 61.3
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 5.1e-192 675.2 538 66.5
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 9.7e-191 671.0 626 58.5
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 9.7e-191 671.0 623 58.1
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 2.2e-190 669.8 625 58.1
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 1.4e-189 667.2 624 58.8
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 1.4e-189 667.2 641 63.0
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 1.8e-189 666.8 565 63.9
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 3.1e-189 666.0 653 61.6
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 5.3e-189 665.2 690 54.5
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.5e-188 663.7 637 62.5
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 2.6e-188 662.9 627 61.9
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 4.5e-188 662.1 645 57.8
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 7.7e-188 661.4 643 58.3
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 7.7e-188 661.4 547 63.6
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 1.0e-187 661.0 574 61.3
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 5.0e-187 658.7 647 59.5
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 8.5e-187 657.9 623 63.1
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 8.5e-187 657.9 681 54.9
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.4e-186 657.1 623 57.5
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 1.4e-186 657.1 626 57.8
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 7.2e-186 654.8 627 56.1
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 9.4e-186 654.4 647 58.4
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 1.2e-185 654.1 630 57.6
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 3.6e-185 652.5 643 58.8
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 4.6e-185 652.1 636 58.6
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 4.6e-185 652.1 636 58.6
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 1.8e-184 650.2 626 57.5
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 3.9e-184 649.0 632 61.4
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 3.9e-184 649.0 631 61.5
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 6.7e-184 648.3 635 61.4
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 2.0e-183 646.7 643 59.4
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 5.7e-183 645.2 619 58.0
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 1.7e-182 643.7 575 57.2
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 6.3e-182 641.7 628 56.7
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 1.4e-181 640.6 691 53.7
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.5e-180 637.1 619 60.9
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 2.0e-180 636.7 644 58.2
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 2.0e-180 636.7 642 58.3
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 5.9e-180 635.2 629 58.7
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 5.0e-179 632.1 627 58.4
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 6.5e-179 631.7 595 58.5
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 1.1e-178 630.9 640 59.4
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 1.9e-178 630.2 624 55.9
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 5.5e-178 628.6 499 67.7
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 9.4e-178 627.9 640 57.5
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 9.4e-178 627.9 623 60.2
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 1.0e-176 624.4 634 54.6
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 2.3e-176 623.2 627 56.5
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 3.0e-176 622.9 616 60.7
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 2.8e-174 616.3 632 57.6
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 1.4e-173 614.0 630 56.0
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 5.3e-173 612.1 548 65.0
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 9.1e-173 611.3 622 59.8
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 2.0e-172 610.1 598 58.0
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 1.7e-171 607.1 630 55.1
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 5.0e-171 605.5 664 52.6
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 1.2e-167 594.3 626 57.7
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 5.7e-167 592.0 630 56.2
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 7.5e-167 591.7 637 56.5
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 9.7e-167 591.3 655 55.6
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 4.4e-159 565.8 636 53.9
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 4.8e-158 562.4 636 53.6
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 2.4e-157 560.1 486 64.8
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 3.1e-157 559.7 463 65.0
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 1.9e-154 550.4 635 53.1
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 2.5e-154 550.1 635 53.2
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 3.7e-150 536.2 672 47.8
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 4.9e-142 509.2 650 46.3
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.1e-141 508.1 475 59.8
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.5e-138 497.7 606 54.0
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 2.6e-135 486.9 620 46.0
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 3.7e-134 483.0 612 50.5
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 1.1e-133 481.5 589 46.0
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.2e-129 465.7 527 52.9
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.9e-125 454.1 365 71.5
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 2.3e-123 447.2 459 54.9
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 4.7e-121 439.5 513 54.2
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 4.4e-119 433.0 361 62.9
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 6.4e-118 429.1 656 45.1
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-117 427.9 333 65.5
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 2.1e-113 414.1 621 44.3
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 4.7e-113 412.9 673 43.2
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 1.0e-107 395.2 317 64.0
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 9.0e-104 382.1 629 39.4
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-102 378.3 413 53.5
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.8e-99 367.9 386 54.1
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.5e-93 346.3 506 43.5
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-71 274.6 204 68.6
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 3.1e-64 250.8 207 71.5
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.0e-62 245.7 204 63.2
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-61 241.9 195 63.1
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 1.2e-60 238.8 284 52.5
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 6.3e-57 226.5 305 48.2
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.0e-56 223.0 197 58.9
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.0e-55 221.5 353 38.5
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.4e-48 198.7 161 76.4
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 3.1e-48 197.6 161 75.8
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 5.0e-46 190.3 172 58.7
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 8.5e-46 189.5 169 69.2
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.2e-41 174.9 121 68.6
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.8e-41 174.5 120 72.5
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 6.3e-41 173.3 268 45.9
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.3e-37 161.0 224 47.3
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 9.2e-32 142.9 182 48.4
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 3.5e-31 141.0 169 52.1
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.1e-28 131.7 106 59.4
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.8e-26 123.6 92 66.3
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-23 115.5 97 59.8
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 1.3e-22 112.5 92 63.0
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 2.8e-20 104.8 109 49.5
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 1.8e-19 102.1 307 28.7
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.8e-19 100.1 79 64.6
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 5.8e-18 97.1 71 60.6
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 7.8e-15 86.7 76 57.9
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 5.1e-14 84.0 82 52.4
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 4.7e-12 77.4 85 51.8
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 1.3e-09 69.3 87 47.1
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 2.4e-08 65.1 46 67.4
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 9.2e-08 63.2 46 65.2
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 9.2e-08 63.2 46 65.2


User provided reference genes

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