Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 0.0e+00 1309.3 650 100.0
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 1.1e-295 1019.6 650 76.2
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 3.1e-287 991.5 650 74.2
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 2.5e-273 945.3 653 71.1
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.4e-260 902.9 650 68.8
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 3.7e-256 888.3 653 66.6
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 8.1e-256 887.1 652 66.0
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.1e-255 886.7 651 66.8
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 5.3e-255 884.4 651 66.7
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 3.4e-254 881.7 652 66.0
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.3e-253 879.8 646 65.6
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 1.0e-250 870.2 647 65.5
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 5.1e-250 867.8 652 64.6
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 1.5e-249 866.3 645 66.0
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 1.6e-248 862.8 649 65.8
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 3.1e-247 858.6 646 63.6
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 4.5e-246 854.7 674 63.6
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 1.7e-245 852.8 650 64.0
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 4.9e-245 851.3 646 64.7
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 4.9e-245 851.3 648 63.6
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 6.5e-245 850.9 652 64.3
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 8.4e-245 850.5 645 62.8
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.4e-244 849.7 646 63.9
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 9.3e-244 847.0 652 63.8
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 6.0e-243 844.3 649 63.2
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 7.9e-243 844.0 648 64.2
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 1.3e-242 843.2 647 64.9
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.3e-242 843.2 657 63.8
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.3e-242 842.4 653 63.4
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 3.0e-242 842.0 648 63.4
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 5.1e-242 841.3 646 63.9
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 1.9e-241 839.3 649 63.5
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 4.3e-241 838.2 647 63.5
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 9.7e-241 837.0 650 62.8
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 1.6e-240 836.3 648 63.3
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 6.3e-240 834.3 651 63.0
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 1.1e-239 833.6 647 63.2
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 5.3e-239 831.2 651 62.5
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 9.0e-239 830.5 648 63.0
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 1.2e-238 830.1 651 61.9
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 5.9e-238 827.8 648 63.0
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 5.0e-237 824.7 652 62.7
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 8.5e-237 823.9 653 61.6
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 1.9e-236 822.8 648 62.0
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 5.5e-236 821.2 648 62.2
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 7.2e-236 820.8 650 61.1
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 7.2e-236 820.8 650 61.1
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 1.0e-234 817.0 649 61.5
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 1.0e-234 817.0 649 62.2
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 2.5e-233 812.4 650 61.4
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 2.5e-233 812.4 646 62.8
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 4.3e-233 811.6 650 61.8
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 5.7e-233 811.2 658 63.8
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 4.8e-232 808.1 651 61.9
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 6.3e-232 807.7 651 60.8
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 3.1e-231 805.4 652 61.5
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 3.1e-231 805.4 653 61.7
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 3.1e-231 805.4 648 61.1
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 6.9e-231 804.3 612 62.7
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 9.1e-231 803.9 650 62.0
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 7.7e-230 800.8 652 61.5
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.0e-229 800.4 648 63.4
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 1.3e-229 800.0 645 62.9
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 2.2e-229 799.3 652 60.1
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 5.0e-229 798.1 651 60.1
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 6.5e-229 797.7 650 61.2
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 8.5e-229 797.3 662 60.7
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 8.5e-229 797.3 651 60.5
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 1.4e-228 796.6 653 60.9
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 2.5e-228 795.8 653 60.3
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 3.2e-228 795.4 621 64.4
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 9.4e-228 793.9 630 63.7
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 9.4e-228 793.9 645 60.8
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 3.6e-227 792.0 650 60.8
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 7.9e-227 790.8 656 58.7
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 8.8e-226 787.3 663 60.2
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 1.5e-225 786.6 657 59.8
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 4.1e-223 778.5 652 59.4
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 4.1e-223 778.5 613 62.6
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 5.0e-221 771.5 526 70.0
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.0e-217 759.6 650 56.2
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 3.3e-217 758.8 650 57.7
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 5.7e-209 731.5 649 57.3
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 1.1e-207 727.2 674 55.9
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 4.2e-204 715.3 567 61.0
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 5.5e-196 688.3 647 53.9
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 7.5e-185 651.4 590 54.1
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 2.8e-179 632.9 486 64.2
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 4.7e-179 632.1 681 50.1
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 3.9e-173 612.5 510 58.8
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 6.2e-171 605.1 624 53.5
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 7.8e-166 588.2 578 53.5
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 1.2e-161 574.3 659 49.2
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 1.7e-152 543.9 592 49.2
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 5.1e-149 532.3 649 44.1
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 8.1e-147 525.0 476 58.0
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 8.1e-139 498.4 647 44.7
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 9.0e-138 495.0 629 43.9
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 7.9e-126 455.3 254 85.0
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 3.9e-125 453.0 541 48.1
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 1.7e-115 421.0 389 52.7
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 1.1e-95 355.1 344 53.8
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 2.1e-94 350.9 480 41.9
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 6.1e-94 349.4 178 88.2
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 5.7e-92 342.8 296 59.1
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 2.7e-89 334.0 355 48.5
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 1.5e-87 328.2 427 41.5
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 1.2e-86 325.1 267 61.8
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.9e-80 303.9 197 73.1
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 2.1e-62 244.6 273 45.1
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 5.1e-56 223.4 170 65.9
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 6.2e-54 216.5 104 93.3
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 6.8e-53 213.0 106 87.7
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 3.9e-48 197.2 219 44.7
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 1.2e-36 159.1 200 42.0
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 4.9e-35 153.7 184 46.7
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 1.2e-33 149.1 137 56.2
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 2.7e-33 147.9 494 28.3
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 6.6e-32 143.3 155 49.7
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 2.2e-27 128.3 86 73.3
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 1.4e-26 125.6 58 91.4
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.3e-24 118.2 83 66.3
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.0e-24 117.9 102 56.9
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 2.9e-19 101.3 75 61.3
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 2.5e-18 98.2 72 62.5
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 1.1e-15 89.4 76 57.9
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 1.9e-15 88.6 76 57.9
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 2.5e-15 88.2 76 56.6
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 9.6e-15 86.3 76 56.6
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 1.3e-14 85.9 76 55.3
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 8.2e-14 83.2 76 55.3
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 1.9e-10 72.0 91 47.3
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 1.2e-09 69.3 73 50.7
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 1.6e-09 68.9 92 46.7
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 1.3e-08 65.9 114 31.6
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 1.9e-07 62.0 149 32.9


User provided reference genes

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