Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.5e-158 562.8 285 100.0
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 3.8e-109 398.7 282 74.5
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 1.6e-70 270.4 301 51.2
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 1.3e-69 267.3 287 55.1
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.1e-68 264.2 332 48.5
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 9.6e-68 261.2 324 48.5
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 3.0e-61 239.6 288 49.0
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 8.7e-61 238.0 298 47.7
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 5.6e-60 235.3 294 48.0
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 4.8e-59 232.3 297 47.8
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.4e-58 230.7 298 47.0
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.8e-58 230.3 312 48.4
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.2e-57 227.6 312 47.1
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 2.6e-57 226.5 281 47.7
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 4.5e-57 225.7 296 47.0
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 7.6e-57 224.9 296 50.0
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.9e-55 220.3 296 45.3
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.2e-54 217.6 292 44.9
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 7.9e-54 214.9 303 48.2
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 3.3e-52 209.5 334 43.1
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 4.3e-52 209.1 286 45.8
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 5.6e-52 208.8 293 44.4
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 3.7e-51 206.1 313 45.0
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 4.8e-51 205.7 297 44.1
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 4.8e-51 205.7 282 46.5
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 1.8e-50 203.8 298 45.3
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 4.0e-50 202.6 294 44.9
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 5.3e-50 202.2 269 45.0
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 5.3e-50 202.2 301 40.9
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 6.9e-50 201.8 291 42.6
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 9.0e-50 201.4 316 43.4
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 4.5e-49 199.1 297 44.4
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.3e-48 197.6 290 45.2
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 1.7e-48 197.2 318 40.3
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 2.2e-48 196.8 295 44.4
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 2.2e-48 196.8 281 43.8
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 2.9e-48 196.4 290 45.2
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 4.9e-48 195.7 304 41.1
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.4e-47 194.1 300 42.7
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 1.9e-47 193.7 179 57.5
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.5e-47 193.4 290 44.8
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 5.5e-47 192.2 291 43.3
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 7.1e-47 191.8 288 40.3
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 1.6e-46 190.7 291 45.0
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 2.1e-46 190.3 371 38.3
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 2.1e-46 190.3 347 39.5
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 6.0e-46 188.7 301 42.5
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 6.0e-46 188.7 319 38.6
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.3e-45 187.6 294 44.2
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 1.8e-45 187.2 294 43.5
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 3.0e-45 186.4 309 40.8
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 1.5e-44 184.1 225 48.4
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 1.9e-44 183.7 297 41.8
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 4.3e-44 182.6 210 49.5
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 9.7e-44 181.4 273 42.1
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-43 180.6 293 42.3
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 2.2e-43 180.3 298 40.9
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 3.7e-43 179.5 298 40.3
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 8.2e-43 178.3 287 39.7
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 8.2e-43 178.3 158 55.7
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 8.2e-43 178.3 294 41.2
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.4e-42 177.6 291 41.9
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.4e-42 177.6 282 40.8
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.4e-42 177.6 162 57.4
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 2.4e-42 176.8 288 40.6
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 4.1e-42 176.0 162 56.8
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 4.1e-42 176.0 395 35.7
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.3e-42 175.6 273 42.5
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 1.2e-41 174.5 297 38.4
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 1.5e-41 174.1 308 40.3
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 2.0e-41 173.7 341 37.0
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 3.4e-41 172.9 243 42.8
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.7e-40 170.6 344 36.0
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 2.2e-40 170.2 315 39.4
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 2.9e-40 169.9 281 37.4
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.5e-40 168.7 273 40.7
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 6.5e-40 168.7 297 40.1
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.4e-39 167.5 296 41.2
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.9e-39 167.2 337 36.2
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 3.2e-39 166.4 285 40.0
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 7.2e-39 165.2 339 35.1
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 9.4e-39 164.9 166 54.2
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 9.4e-39 164.9 350 36.0
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 1.6e-38 164.1 318 36.2
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.7e-38 163.3 232 40.9
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 4.6e-38 162.5 295 39.7
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 4.6e-38 162.5 318 35.8
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.4e-37 161.0 274 39.8
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 3.0e-37 159.8 236 43.2
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 3.0e-37 159.8 164 50.0
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 3.9e-37 159.5 278 40.3
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 3.9e-37 159.5 199 46.7
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.9e-37 159.5 354 32.8
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 1.1e-36 157.9 348 34.8
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 1.5e-36 157.5 340 34.7
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.0e-36 157.1 187 46.0
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 5.7e-36 155.6 187 45.5
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 7.4e-36 155.2 187 46.5
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.3e-35 154.5 274 39.4
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 1.3e-35 154.5 182 45.6
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.7e-35 154.1 281 38.1
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.7e-35 154.1 172 48.3
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 2.2e-35 153.7 274 39.4
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 2.2e-35 153.7 293 38.2
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 3.7e-35 152.9 357 35.3
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 8.2e-35 151.8 278 38.1
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 6.9e-34 148.7 153 47.7
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 9.1e-34 148.3 153 48.4
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 1.2e-33 147.9 254 35.8
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.0e-33 147.1 182 47.8
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 2.6e-33 146.7 180 47.8
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 2.6e-33 146.7 323 35.6
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 3.4e-33 146.4 223 42.6
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 3.4e-33 146.4 247 38.9
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 4.5e-33 146.0 278 37.8
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 8.5e-32 141.7 359 35.1
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 1.9e-31 140.6 211 39.8
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 4.2e-31 139.4 263 38.8
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 4.2e-31 139.4 263 38.8
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 2.1e-30 137.1 262 38.2
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 2.7e-30 136.7 138 56.5
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 6.1e-30 135.6 244 38.9
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 7.9e-30 135.2 275 38.2
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.0e-29 134.8 233 41.6
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 1.8e-29 134.0 296 36.5
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 2.3e-29 133.7 262 38.9
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 3.0e-29 133.3 298 34.2
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 3.9e-29 132.9 231 41.6
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 5.1e-29 132.5 135 54.1
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 5.1e-29 132.5 135 54.1
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 5.7e-28 129.0 258 38.4
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.3e-27 127.9 231 38.5
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 3.7e-27 126.3 260 36.9
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 3.7e-27 126.3 260 36.9
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 8.2e-27 125.2 295 32.9
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 1.4e-26 124.4 101 55.4
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 1.8e-26 124.0 250 33.6
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 3.1e-26 123.2 284 33.1
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 5.9e-25 119.0 197 38.6
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.8e-24 116.3 258 36.4
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.1e-23 114.8 174 42.0
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.9e-23 114.0 129 50.4
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.6e-22 110.9 354 29.4
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 6.1e-22 109.0 261 34.5
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 6.1e-22 109.0 272 29.8
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.7e-19 100.9 80 56.2
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 2.2e-19 100.5 269 30.9
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 8.2e-19 98.6 246 31.7
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.1e-18 98.2 275 32.0
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.5e-17 93.2 104 46.2
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 6.1e-14 82.4 104 44.2
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 3.0e-13 80.1 125 39.2
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.5e-12 77.8 221 30.3
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 9.7e-12 75.1 100 45.0
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.8e-10 70.9 318 28.3
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.7e-09 67.0 50 58.0
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 1.1e-07 61.6 83 43.4
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.1e-06 57.4 105 37.1


User provided reference genes

Program Settings