Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 1.1e-262 909.4 466 100.0
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 6.8e-180 634.4 468 66.5
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.0e-179 632.9 470 69.4
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 6.4e-178 627.9 470 68.3
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 7.1e-177 624.4 428 73.1
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 5.8e-171 604.7 468 65.4
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 7.6e-163 577.8 459 63.0
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 5.4e-161 571.6 462 61.5
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 6.0e-160 568.2 463 61.1
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 2.3e-159 566.2 463 60.5
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 6.6e-159 564.7 463 60.3
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 2.6e-155 552.7 458 60.5
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 3.4e-155 552.4 464 59.5
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 3.4e-155 552.4 466 59.9
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 9.9e-155 550.8 458 60.3
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 1.3e-154 550.4 466 56.9
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 1.3e-154 550.4 514 55.3
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 2.9e-154 549.3 466 56.9
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 5.4e-153 545.0 464 59.1
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 9.3e-153 544.3 462 58.0
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.6e-152 543.5 460 58.3
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.3e-151 539.7 462 60.2
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 3.0e-151 539.3 465 57.4
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 3.9e-151 538.9 463 58.7
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 8.7e-151 537.7 460 59.1
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 8.7e-151 537.7 460 60.9
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 7.3e-150 534.6 464 58.2
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 2.1e-149 533.1 466 57.7
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 4.8e-149 531.9 464 58.2
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 4.8e-149 531.9 464 58.2
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 6.2e-149 531.6 464 58.2
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 1.4e-148 530.4 468 56.8
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 2.4e-148 529.6 447 59.3
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 3.1e-148 529.3 462 58.7
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 4.0e-148 528.9 466 57.7
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.2e-147 527.3 459 58.6
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 5.8e-147 525.0 466 54.1
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 7.6e-147 524.6 446 59.0
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.3e-146 523.9 465 57.0
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 1.3e-146 523.9 464 56.2
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.9e-146 522.7 464 57.5
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 1.4e-145 520.4 465 57.6
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 2.4e-145 519.6 465 56.6
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 5.4e-145 518.5 463 55.9
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 1.6e-144 516.9 464 55.8
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 4.6e-144 515.4 466 56.4
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 7.9e-144 514.6 461 56.2
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 1.0e-143 514.2 463 55.7
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 1.0e-143 514.2 499 55.3
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 1.8e-143 513.5 463 54.6
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 1.1e-142 510.8 459 55.1
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 1.5e-142 510.4 464 55.8
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.3e-142 509.2 463 55.9
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 9.6e-142 507.7 464 55.0
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 2.8e-141 506.1 463 55.3
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 3.7e-141 505.8 466 54.1
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 1.4e-140 503.8 466 54.1
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 3.1e-140 502.7 464 56.0
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 5.8e-139 498.4 464 52.2
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 5.8e-139 498.4 466 53.0
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 7.6e-139 498.0 466 56.4
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 1.7e-138 496.9 466 53.0
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 2.2e-138 496.5 466 56.4
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 6.5e-138 495.0 462 57.4
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 1.1e-137 494.2 470 51.9
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 1.1e-137 494.2 462 54.8
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 4.2e-137 492.3 467 54.4
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 4.6e-136 488.8 467 53.3
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.0e-135 486.1 435 56.1
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.0e-135 486.1 435 56.1
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 5.1e-135 485.3 465 53.1
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 8.7e-135 484.6 467 53.7
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 1.5e-134 483.8 466 53.0
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 2.5e-134 483.0 468 54.3
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 3.3e-134 482.6 466 53.4
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 4.3e-134 482.3 466 53.0
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 5.7e-134 481.9 466 53.9
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 5.7e-134 481.9 465 53.1
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 7.4e-134 481.5 465 54.4
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 9.6e-134 481.1 466 52.4
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 2.1e-133 479.9 468 53.0
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 6.2e-133 478.4 465 52.5
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 2.4e-132 476.5 470 52.1
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 4.1e-132 475.7 466 53.2
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 5.3e-132 475.3 466 53.0
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 3.4e-131 472.6 466 53.0
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 5.8e-131 471.9 468 53.0
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.0e-130 471.1 468 52.4
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 6.5e-130 468.4 466 51.9
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 1.9e-129 466.8 466 51.9
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 1.9e-129 466.8 457 52.7
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 2.1e-128 463.4 423 55.3
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.0e-127 461.1 464 53.4
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 6.5e-122 441.8 465 50.5
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 4.2e-121 439.1 425 51.1
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 1.1e-116 424.5 454 49.8
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 1.2e-115 421.0 464 47.4
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 3.4e-115 419.5 459 48.4
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.6e-112 409.5 468 45.9
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 5.1e-111 405.6 467 47.8
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 8.8e-111 404.8 449 48.1
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 4.4e-110 402.5 452 48.0
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 1.2e-107 394.4 454 46.3
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 2.0e-107 393.7 429 49.9
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 2.5e-97 360.1 422 44.8
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 1.4e-95 354.4 292 57.9
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 8.6e-82 308.5 367 45.8
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 8.6e-82 308.5 367 45.8
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 1.1e-81 308.1 287 54.7
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 3.3e-81 306.6 471 38.0
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 1.8e-79 300.8 500 37.8
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 5.4e-76 289.3 466 38.6
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 1.9e-73 280.8 532 35.0
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 6.0e-67 259.2 331 46.5
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 5.1e-58 229.6 480 32.5
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 1.4e-55 221.5 516 31.6
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 7.6e-46 189.1 350 33.1
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 3.5e-43 180.3 162 54.3
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.3e-42 178.3 162 53.7
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.5e-41 174.9 191 49.2
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 9.9e-38 162.2 367 32.4
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 1.2e-35 155.2 117 61.5
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 5.6e-33 146.4 341 29.3
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.2e-30 138.7 127 49.6
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.2e-30 138.7 127 49.6
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.0e-30 137.9 349 30.4
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 4.5e-30 136.7 127 57.5
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 9.9e-30 135.6 124 50.0
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 3.9e-26 123.6 353 26.3
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.5e-25 121.7 102 52.9
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 1.9e-25 121.3 215 37.2
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 1.1e-23 115.5 310 29.0
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.4e-20 105.1 121 45.5
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 1.2e-14 85.5 88 48.9
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 2.0e-14 84.7 88 48.9
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.0e-13 82.4 173 32.4
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.7e-11 74.3 69 53.6
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 2.2e-08 64.7 71 43.7
EL10Ac7g17723 Beta vulgaris HOM05D005294 ORTHO05D038989 5.3e-07 60.1 41 61.0
AUR62042416 Chenopodium quinoa HOM05D000346 ORTHO05D011742 5.9e-06 56.6 44 65.9


User provided reference genes

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