Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 0.0e+00 1280.0 686 100.0
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.8e-190 669.5 667 59.1
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.1e-177 626.7 668 55.1
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 7.4e-175 618.2 670 53.3
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.0e-168 597.8 630 54.1
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 8.3e-158 561.6 683 48.8
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 2.4e-149 533.5 677 48.7
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 5.2e-144 515.8 678 46.2
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 8.9e-144 515.0 571 50.4
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.0e-143 513.8 684 45.6
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 9.8e-143 511.5 699 45.2
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 9.8e-143 511.5 699 45.2
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 2.9e-142 510.0 673 46.7
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.8e-141 507.3 691 44.7
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 3.2e-141 506.5 698 46.1
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 5.4e-141 505.8 678 45.3
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 5.4e-141 505.8 704 46.2
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 7.8e-140 501.9 681 44.1
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 6.6e-139 498.8 687 44.1
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.9e-138 497.3 683 43.3
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 4.3e-138 496.1 588 48.5
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.1e-136 491.5 702 44.4
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 2.3e-136 490.3 683 43.3
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 6.8e-136 488.8 611 46.0
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 3.4e-135 486.5 678 45.9
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.4e-135 486.1 680 45.1
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 4.4e-135 486.1 680 45.1
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 6.4e-134 482.3 679 44.0
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 5.4e-133 479.2 679 44.0
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.6e-132 477.6 687 43.7
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 2.7e-132 476.9 581 46.5
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 7.8e-132 475.3 448 56.5
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 2.5e-130 470.3 685 42.6
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.1e-129 467.2 676 42.5
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.4e-128 464.5 680 44.0
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.7e-126 457.6 697 43.8
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 6.4e-126 455.7 728 44.5
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 4.6e-124 449.5 675 41.2
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 5.1e-123 446.0 704 41.1
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 1.1e-122 444.9 672 42.3
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 2.5e-122 443.7 696 43.5
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 9.5e-122 441.8 578 45.5
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.2e-121 439.1 616 44.3
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 3.4e-119 433.3 701 41.7
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 5.8e-119 432.6 615 41.1
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 9.9e-119 431.8 587 43.3
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.9e-118 430.3 583 42.7
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 2.9e-118 430.3 513 49.1
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 4.9e-118 429.5 587 43.1
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.4e-117 427.9 585 43.1
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.2e-117 426.8 577 43.3
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 4.1e-117 426.4 704 43.2
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.4e-117 426.0 684 40.9
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 9.2e-117 425.2 542 44.1
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 1.2e-116 424.9 598 44.5
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.6e-116 424.5 580 42.9
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.6e-116 424.5 687 42.4
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 1.6e-116 424.5 698 40.3
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.6e-116 424.5 697 39.2
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 7.8e-116 422.2 557 44.0
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 7.8e-116 422.2 566 44.0
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 7.8e-116 422.2 620 42.3
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 5.1e-115 419.5 666 39.5
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 3.3e-114 416.8 566 41.5
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 3.3e-114 416.8 575 43.3
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 5.6e-114 416.0 560 43.4
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.6e-113 414.5 700 39.4
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.6e-113 413.3 640 41.1
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 3.6e-113 413.3 696 38.6
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.1e-113 412.1 754 38.6
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.4e-112 411.4 556 42.3
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 5.2e-112 409.5 609 40.2
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 9.9e-111 405.2 554 42.8
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 1.1e-109 401.7 560 43.6
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 2.4e-109 400.6 639 39.1
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.2e-109 400.2 592 42.4
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 2.1e-108 397.5 584 44.5
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 5.1e-107 392.9 617 41.2
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 8.7e-107 392.1 622 40.4
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 8.7e-107 392.1 617 41.2
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 8.7e-107 392.1 670 37.2
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.9e-106 391.0 617 40.5
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.5e-106 390.6 569 40.8
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 1.8e-104 384.4 638 38.4
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 2.2e-102 377.5 576 39.9
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 3.2e-101 373.6 648 38.7
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 6.0e-100 369.4 557 40.9
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.0e-99 368.6 674 37.2
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.8e-99 367.9 576 39.2
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.5e-98 364.8 605 39.5
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 2.1e-97 360.9 463 43.4
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 2.0e-95 354.4 583 40.1
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 2.0e-95 354.4 605 38.3
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 3.4e-95 353.6 605 38.2
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.9e-94 350.5 350 56.3
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 6.2e-89 332.8 372 48.4
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 1.7e-86 324.7 507 40.0
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.8e-86 323.6 460 42.2
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 4.9e-86 323.2 571 37.5
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 8.7e-83 312.4 471 42.9
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 3.7e-81 307.0 451 39.7
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.4e-80 304.3 588 36.4
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 5.3e-80 303.1 632 35.6
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 2.6e-79 300.8 630 34.0
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.8e-75 288.1 595 35.3
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 2.3e-75 287.7 408 40.7
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 5.1e-75 286.6 640 33.9
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 5.1e-75 286.6 616 36.0
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 5.3e-72 276.6 645 31.9
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 9.1e-72 275.8 663 33.0
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.2e-71 275.4 351 47.0
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 1.5e-71 275.0 690 31.2
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 3.4e-71 273.9 640 32.5
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 3.8e-70 270.4 450 36.7
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.1e-69 268.9 545 36.1
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 7.2e-69 266.2 325 42.5
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.3e-65 255.4 388 42.8
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.6e-63 247.7 422 39.1
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.9e-62 244.2 365 39.2
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 2.5e-61 241.1 561 32.6
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.2e-60 238.8 564 33.2
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 2.6e-58 231.1 488 34.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 5.2e-51 206.8 192 58.9
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.3e-38 164.9 374 30.7
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 2.3e-38 164.9 171 52.0
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.3e-38 164.9 394 32.0
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.5e-37 162.2 194 41.8
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 1.2e-36 159.1 392 30.1
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 2.8e-36 157.9 221 42.5
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 1.0e-35 156.0 257 37.4
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.4e-35 155.6 215 40.0
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 1.6e-31 142.1 202 40.1
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.3e-30 139.0 187 42.8
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.7e-30 138.7 163 43.6
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.5e-29 135.6 334 34.7
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.8e-27 128.6 352 31.2
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.6e-26 124.8 140 45.0
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.3e-25 122.5 371 29.6
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.7e-25 122.1 257 32.7
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.7e-25 122.1 109 54.1
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.4e-25 120.2 211 39.3
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 6.0e-23 113.6 102 53.9
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 1.0e-22 112.8 256 34.0
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 2.1e-20 105.1 331 30.8
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 4.4e-18 97.4 102 57.8
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 2.1e-15 88.6 117 41.9
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 4.6e-15 87.4 250 28.4
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.6e-15 87.4 148 38.5
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 6.0e-15 87.0 83 50.6
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 6.0e-15 87.0 83 51.8
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 5.1e-14 84.0 110 40.0
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 1.5e-13 82.4 232 30.2
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 9.5e-13 79.7 127 36.2
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 1.1e-11 76.3 125 37.6
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.1e-11 74.7 99 47.5
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 3.1e-11 74.7 69 47.8
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.1e-11 74.7 147 34.7
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.2e-11 73.9 70 54.3
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 8.9e-11 73.2 585 22.6
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.1e-08 66.2 67 47.8
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 7.1e-08 63.5 134 30.6
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.7e-07 61.6 101 38.6
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 2.3e-06 58.5 539 25.4


User provided reference genes

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