Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 2.4e-303 1044.6 509 100.0
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 1.3e-256 889.4 488 86.5
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 1.2e-230 803.1 490 75.3
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 2.7e-230 802.0 490 75.1
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 3.5e-230 801.6 489 75.1
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 4.6e-230 801.2 489 75.1
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 9.6e-228 793.5 488 74.2
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.3e-227 793.1 499 74.5
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 1.5e-225 786.2 490 74.7
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 3.8e-224 781.6 490 73.1
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 3.8e-224 781.6 492 74.2
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 8.4e-224 780.4 490 72.7
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 3.2e-223 778.5 490 71.8
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 7.1e-223 777.3 506 75.7
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 9.3e-223 776.9 492 73.8
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 1.2e-222 776.5 487 73.3
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.6e-222 776.2 490 72.0
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 2.1e-222 775.8 487 74.5
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 3.5e-222 775.0 488 73.0
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 7.9e-222 773.9 488 72.5
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 7.9e-222 773.9 488 73.6
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 1.0e-221 773.5 489 74.4
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 1.8e-221 772.7 490 71.2
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 1.1e-220 770.0 490 73.1
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 1.5e-220 769.6 488 72.7
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 2.5e-220 768.8 488 71.5
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 2.5e-220 768.8 489 73.8
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 3.3e-220 768.5 489 71.2
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 3.3e-220 768.5 490 71.2
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 4.3e-220 768.1 488 72.1
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 5.6e-220 767.7 490 71.0
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 3.7e-219 765.0 499 72.9
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 4.8e-219 764.6 491 73.5
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 6.2e-219 764.2 490 72.9
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 1.1e-218 763.5 485 70.3
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.1e-218 763.5 512 68.9
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 2.4e-218 762.3 490 71.6
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 3.1e-218 761.9 489 71.2
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 5.3e-218 761.1 484 72.3
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 5.3e-218 761.1 489 72.2
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 3.4e-217 758.4 490 71.4
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 4.5e-217 758.1 487 71.7
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 7.6e-217 757.3 485 70.9
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 9.9e-217 756.9 490 70.8
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 1.3e-216 756.5 489 70.8
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 1.7e-216 756.1 488 70.9
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 2.2e-216 755.7 485 70.5
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 2.2e-216 755.7 485 70.5
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 1.1e-215 753.4 490 71.4
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 3.2e-215 751.9 485 70.9
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 1.2e-214 750.0 473 71.9
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.6e-214 749.6 488 71.7
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 1.3e-213 746.5 489 70.6
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 1.3e-213 746.5 482 70.5
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 3.0e-213 745.3 486 70.0
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 6.7e-213 744.2 486 70.4
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 6.7e-213 744.2 486 70.4
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 1.5e-212 743.0 486 69.5
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 3.3e-212 741.9 489 70.1
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 3.3e-212 741.9 488 70.3
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 5.6e-212 741.1 486 69.1
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 7.4e-212 740.7 486 69.5
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 9.6e-212 740.3 495 68.5
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 1.3e-211 740.0 547 64.4
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.1e-211 739.2 488 69.5
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 8.2e-211 737.3 489 71.2
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 5.3e-210 734.6 489 70.8
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 2.0e-209 732.6 490 71.0
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 2.0e-209 732.6 469 71.4
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 1.7e-208 729.6 510 66.3
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 1.1e-207 726.9 483 67.7
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 2.5e-207 725.7 511 65.8
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 9.3e-207 723.8 483 67.5
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 2.2e-203 712.6 529 64.8
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 3.1e-202 708.8 505 68.3
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 2.2e-200 702.6 409 78.2
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 1.9e-199 699.5 487 66.9
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 1.9e-196 689.5 494 65.4
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 5.7e-196 688.0 493 68.0
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 9.7e-196 687.2 487 68.4
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 4.1e-194 681.8 487 64.9
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 1.5e-193 679.9 478 65.5
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 7.2e-191 671.0 492 65.2
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 5.1e-189 664.8 571 58.5
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 7.4e-188 661.0 482 61.2
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 6.3e-187 657.9 409 74.6
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 1.5e-185 653.3 555 60.2
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 3.4e-185 652.1 517 62.5
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 4.5e-185 651.7 400 73.2
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 1.0e-184 650.6 487 65.3
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 7.2e-183 644.4 392 72.4
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.3e-180 635.6 548 57.7
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 3.3e-180 635.6 497 62.6
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.1e-178 629.0 493 62.1
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 2.9e-168 595.9 487 61.2
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 2.9e-168 595.9 420 64.3
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 1.2e-166 590.5 498 55.0
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 1.8e-162 576.6 492 55.5
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 9.5e-159 564.3 362 71.5
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 1.2e-156 557.4 462 60.2
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 1.5e-151 540.4 487 56.5
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.9e-151 540.0 332 73.2
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.0e-144 517.7 304 77.3
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 2.3e-141 506.5 343 73.5
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.9e-139 499.6 346 66.5
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.3e-136 490.7 491 53.0
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 9.9e-132 474.6 435 52.4
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 9.9e-132 474.6 286 74.5
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 6.4e-131 471.9 515 45.0
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 7.1e-130 468.4 488 50.0
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 4.4e-124 449.1 324 66.7
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.3e-119 431.8 252 76.6
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 8.1e-110 401.7 231 77.9
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 1.4e-109 401.0 286 66.1
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.6e-108 396.7 229 77.7
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.6e-108 396.7 229 77.7
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 1.4e-106 391.0 229 76.0
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 3.9e-80 303.1 526 36.5
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 3.2e-74 283.5 165 73.9
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 6.1e-73 279.3 544 35.7
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 3.3e-71 273.5 234 60.3
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.7e-70 270.0 176 73.3
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 1.4e-69 268.1 539 33.8
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 2.4e-69 267.3 169 71.6
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 5.3e-69 266.2 493 35.7
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 1.0e-67 261.9 532 32.0
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.0e-67 261.9 176 71.6
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 8.5e-59 232.3 366 42.1
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 1.0e-56 225.3 190 56.8
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 3.7e-46 190.3 265 40.4
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 1.2e-33 148.7 85 71.8
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 1.5e-31 141.7 99 66.7
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.0e-31 141.4 103 72.8
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 5.8e-31 139.8 307 31.9
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 7.5e-31 139.4 132 57.6
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 2.4e-29 134.4 106 62.3
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 9.2e-29 132.5 194 40.7
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 4.6e-28 130.2 83 73.5
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 5.0e-27 126.7 102 59.8
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 3.6e-25 120.6 121 47.9
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 9.8e-23 112.5 85 58.8
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.6e-20 105.1 269 31.6
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.2e-12 79.0 41 73.2
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 3.0e-11 74.3 51 66.7
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 4.7e-09 67.0 96 40.6
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 8.1e-09 66.2 80 46.2


User provided reference genes

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