Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 0.0e+00 1744.9 928 100.0
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 0.0e+00 1131.3 946 67.5
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 0.0e+00 1108.6 898 68.2
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1106.3 907 66.5
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 4.8e-310 1067.8 950 64.0
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 5.9e-300 1034.2 885 65.9
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 2.1e-297 1025.8 936 60.9
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 3.3e-295 1018.5 930 58.7
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 4.4e-295 1018.1 930 60.3
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 1.2e-292 1010.0 916 59.3
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 3.5e-292 1008.4 924 58.7
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 4.5e-292 1008.1 899 60.3
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 2.2e-291 1005.7 896 60.2
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 1.2e-289 1000.0 878 60.8
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 6.1e-289 997.7 891 60.4
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 1.4e-285 986.5 931 57.7
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 2.7e-284 982.2 954 57.3
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 1.3e-283 979.9 894 59.3
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.5e-282 976.5 888 59.6
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 1.2e-281 973.4 910 58.5
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 2.3e-280 969.1 928 57.3
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 1.2e-279 966.8 866 59.2
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 4.4e-279 964.9 928 57.1
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 2.2e-278 962.6 936 57.6
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 8.3e-278 960.7 939 56.9
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 1.6e-276 956.4 905 57.3
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 3.5e-276 955.3 900 57.1
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 5.9e-276 954.5 936 56.5
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 2.3e-275 952.6 894 59.1
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 2.9e-275 952.2 933 56.2
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 1.9e-274 949.5 867 58.5
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.5e-274 949.1 864 59.7
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 4.2e-274 948.3 910 55.9
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 4.2e-274 948.3 863 59.4
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 7.2e-274 947.6 905 57.8
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 4.7e-273 944.9 907 57.0
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 4.7e-273 944.9 902 57.4
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 6.1e-273 944.5 907 56.2
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 6.1e-273 944.5 910 55.8
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.4e-272 943.3 897 56.6
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 2.0e-271 939.5 906 57.6
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 4.4e-271 938.3 933 55.7
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 9.8e-271 937.2 899 56.8
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 1.3e-270 936.8 939 55.8
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 4.1e-269 931.8 902 57.3
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 5.4e-269 931.4 935 54.9
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 1.2e-268 930.2 931 55.3
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 1.2e-268 930.2 875 58.5
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 2.3e-267 926.0 928 55.8
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 1.5e-266 923.3 917 55.3
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 1.5e-266 923.3 914 56.8
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 9.5e-266 920.6 929 55.0
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 9.5e-266 920.6 935 55.7
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 1.6e-265 919.8 937 55.1
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 3.0e-264 915.6 904 56.3
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 2.6e-263 912.5 983 52.9
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 2.6e-263 912.5 900 56.7
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 5.8e-263 911.4 881 56.5
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 2.9e-262 909.1 936 54.4
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 6.4e-262 907.9 870 57.5
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 5.4e-261 904.8 925 54.7
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 9.2e-261 904.0 896 55.9
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 2.7e-260 902.5 871 56.3
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 9.5e-258 894.0 935 53.4
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 2.3e-256 889.4 901 55.0
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 8.3e-254 880.9 907 53.7
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 1.1e-253 880.6 887 55.2
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 3.2e-253 879.0 921 54.5
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 3.5e-252 875.5 888 54.6
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 1.7e-251 873.2 907 54.6
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 4.3e-250 868.6 895 54.0
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 4.7e-249 865.1 887 55.2
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 3.1e-248 862.4 888 54.1
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 6.8e-248 861.3 901 53.5
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 8.9e-248 860.9 929 52.9
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 2.6e-247 859.4 889 55.0
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 3.7e-246 855.5 892 54.7
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 3.7e-246 855.5 892 54.7
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 4.1e-245 852.0 827 56.6
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 3.9e-243 845.5 857 53.6
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 1.9e-242 843.2 864 54.1
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 2.8e-241 839.3 939 51.2
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 1.5e-239 833.6 887 52.4
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 2.6e-239 832.8 935 51.3
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 1.0e-235 820.8 856 55.8
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.3e-227 793.1 802 54.6
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 3.3e-226 789.3 858 51.0
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 4.8e-225 785.4 751 56.6
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 4.8e-225 785.4 805 54.7
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 1.4e-224 783.9 864 49.9
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 7.6e-223 778.1 909 50.9
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 1.9e-221 773.5 648 63.3
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 2.1e-217 760.0 781 55.1
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.0e-215 753.4 404 98.8
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 2.5e-205 719.9 802 50.5
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 1.0e-187 661.4 670 56.4
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 4.8e-185 652.5 550 60.5
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 6.5e-174 615.5 551 57.5
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 4.0e-171 606.3 614 53.3
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 4.5e-167 592.8 890 41.6
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 1.5e-165 587.8 895 41.0
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 6.3e-161 572.4 914 38.7
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.4e-160 571.2 915 37.8
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 2.6e-154 550.4 712 47.2
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 2.3e-150 537.3 476 59.5
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 1.7e-145 521.2 804 42.8
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 1.4e-139 501.5 866 37.5
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.1e-128 465.3 348 71.0
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 3.9e-118 430.3 480 51.5
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 6.0e-111 406.4 452 55.8
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 1.1e-104 385.6 921 31.8
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 5.4e-104 383.3 408 54.4
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 5.8e-98 363.2 956 32.5
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 1.9e-96 358.2 979 29.5
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.5e-90 338.6 181 97.2
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 1.0e-81 309.3 309 50.8
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 6.1e-79 300.1 288 51.0
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 2.3e-78 298.1 948 27.5
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.5e-74 285.4 341 50.1
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 4.8e-68 263.8 454 42.5
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 3.3e-61 241.1 260 51.2
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 1.9e-56 225.3 219 57.1
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 9.4e-56 223.0 265 48.7
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 3.2e-48 198.0 157 64.3
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.1e-47 195.3 266 41.0
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 8.0e-47 193.4 398 38.7
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 6.8e-46 190.3 330 40.0
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 4.9e-44 184.1 175 56.0
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 8.9e-38 163.3 133 62.4
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 3.5e-34 151.4 133 56.4
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 1.7e-33 149.1 175 54.9
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.2e-31 142.9 177 39.5
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 4.0e-30 137.9 105 66.7
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.0e-29 135.6 78 93.6
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 7.0e-27 127.1 129 58.9
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 1.6e-23 115.9 97 63.9
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 2.9e-20 105.1 138 47.8
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 5.1e-17 94.4 197 30.5
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 6.6e-17 94.0 156 43.6
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 2.1e-15 89.0 92 54.3
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 1.1e-14 86.7 176 36.9
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 4.0e-14 84.7 180 38.3
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 7.6e-13 80.5 52 73.1
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 6.6e-09 67.4 77 50.6
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 6.6e-09 67.4 67 49.3
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.3e-08 65.1 96 40.6


User provided reference genes

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