Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 2.6e-113 412.1 217 100.0
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 2.9e-80 302.4 217 73.7
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 1.0e-77 293.9 217 74.7
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 1.0e-77 293.9 213 76.1
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 2.3e-74 282.7 214 71.0
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 6.8e-74 281.2 213 69.0
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 4.4e-73 278.5 209 70.3
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 4.4e-73 278.5 194 73.7
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 1.7e-72 276.6 215 69.3
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 2.2e-72 276.2 215 69.3
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 8.3e-72 274.2 214 68.2
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 8.3e-72 274.2 216 68.5
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 1.4e-71 273.5 214 69.6
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 1.9e-71 273.1 195 73.8
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 2.4e-71 272.7 213 69.5
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 3.2e-71 272.3 214 68.7
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 4.1e-71 271.9 208 69.7
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 9.2e-71 270.8 215 67.9
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 1.2e-70 270.4 215 68.4
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 1.6e-70 270.0 216 67.1
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 2.1e-70 269.6 214 66.4
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 2.1e-70 269.6 200 71.5
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 2.7e-70 269.2 215 67.9
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 3.5e-70 268.9 214 68.2
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 3.5e-70 268.9 214 67.3
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 7.8e-70 267.7 222 65.8
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 1.7e-69 266.5 198 71.2
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.7e-69 266.5 215 67.0
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 2.3e-69 266.2 218 64.2
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 3.0e-69 265.8 214 64.5
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 3.0e-69 265.8 225 65.3
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 3.0e-69 265.8 218 65.6
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 3.9e-69 265.4 208 66.8
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 5.1e-69 265.0 218 65.1
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 5.1e-69 265.0 219 66.7
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 8.6e-69 264.2 236 63.1
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 8.6e-69 264.2 208 67.3
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 8.6e-69 264.2 214 65.0
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 1.1e-68 263.8 214 65.0
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 1.9e-68 263.1 215 67.0
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 2.5e-68 262.7 218 64.2
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 2.5e-68 262.7 213 67.1
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 3.3e-68 262.3 214 66.4
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 5.6e-68 261.5 218 66.5
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 9.5e-68 260.8 201 67.7
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 9.5e-68 260.8 218 66.1
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 9.5e-68 260.8 214 65.9
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.2e-67 260.4 214 64.5
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 1.6e-67 260.0 214 65.9
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 2.8e-67 259.2 216 64.4
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 2.8e-67 259.2 237 61.2
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 4.7e-67 258.5 208 65.4
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 8.1e-67 257.7 193 69.4
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 1.1e-66 257.3 208 65.9
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 1.8e-66 256.5 214 65.4
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 3.1e-66 255.8 218 64.7
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 4.0e-66 255.4 193 69.4
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 6.8e-66 254.6 193 67.9
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 8.9e-66 254.2 208 65.4
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 1.5e-65 253.4 203 66.0
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 2.0e-65 253.1 214 63.6
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 2.6e-65 252.7 219 63.5
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 2.9e-64 249.2 214 62.1
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 4.9e-64 248.4 191 69.6
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 6.4e-64 248.1 207 62.8
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 8.4e-64 247.7 204 65.2
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 6.6e-61 238.0 218 61.0
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 8.6e-61 237.7 215 59.1
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 2.5e-60 236.1 214 63.1
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 4.3e-60 235.3 167 74.3
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 5.6e-60 235.0 183 67.2
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 9.6e-60 234.2 198 62.6
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 1.2e-59 233.8 230 56.5
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 2.1e-59 233.0 167 73.1
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 2.8e-59 232.6 167 72.5
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 4.7e-59 231.9 167 68.3
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 1.8e-58 229.9 212 58.0
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 2.4e-58 229.6 209 59.8
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 4.4e-57 225.3 167 69.5
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 9.9e-57 224.2 170 66.5
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 2.2e-56 223.0 193 62.2
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 1.0e-53 214.2 155 72.9
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 3.9e-53 212.2 155 77.4
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 8.1e-51 204.5 227 52.4
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 3.1e-50 202.6 152 75.0
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 6.9e-50 201.4 214 54.2
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 1.5e-49 200.3 141 71.6
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 1.7e-48 196.8 218 49.5
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 3.8e-48 195.7 140 68.6
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 2.5e-44 183.0 136 69.1
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 2.7e-38 162.9 214 48.1
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 6.0e-38 161.8 137 67.2
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 7.9e-38 161.4 137 66.4
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 3.2e-23 112.8 95 66.3
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 6.7e-21 105.1 188 38.3
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.1e-20 104.4 80 71.2
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.1e-20 104.4 80 71.2
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 5.3e-18 95.5 73 69.9
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 2.9e-16 89.7 59 74.6
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 2.9e-16 89.7 75 65.3
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 8.8e-13 78.2 73 49.3
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 4.4e-12 75.9 188 36.2
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 1.7e-11 73.9 157 35.7


User provided reference genes

Program Settings