Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 0.0e+00 1205.7 594 100.0
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.0e-260 903.3 601 76.4
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 5.5e-259 897.5 599 75.3
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 6.7e-257 890.6 601 75.4
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 2.0e-253 879.0 600 73.7
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 1.7e-252 875.9 594 75.3
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 3.3e-248 861.7 602 72.6
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 6.3e-247 857.4 599 71.8
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 8.2e-247 857.1 602 71.9
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.4e-246 856.3 599 72.0
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 4.1e-246 854.7 597 72.2
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 9.1e-246 853.6 600 71.8
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.2e-245 853.2 602 71.9
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.3e-244 849.7 601 71.5
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 5.0e-244 847.8 597 72.0
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 1.9e-243 845.9 600 71.0
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 7.2e-243 844.0 601 71.2
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 1.6e-242 842.8 600 70.8
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 2.7e-242 842.0 600 70.8
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.7e-242 842.0 602 70.4
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 6.1e-242 840.9 604 70.7
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 8.0e-242 840.5 602 70.3
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 1.0e-241 840.1 599 70.6
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 1.4e-241 839.7 599 69.9
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 1.8e-241 839.3 599 70.1
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.0e-241 838.6 602 70.1
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 4.0e-241 838.2 595 72.1
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.5e-240 836.3 600 69.8
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 2.0e-240 835.9 604 70.9
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 4.4e-240 834.7 600 71.0
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 5.7e-240 834.3 600 69.5
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 7.5e-240 833.9 603 70.1
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 7.5e-240 833.9 600 69.3
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 1.3e-239 833.2 600 71.2
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 8.3e-239 830.5 599 68.9
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 1.2e-237 826.6 605 68.9
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.7e-237 825.5 598 69.1
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 3.5e-237 825.1 600 69.5
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 1.3e-236 823.2 605 68.6
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 2.9e-236 822.0 596 69.5
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 3.8e-236 821.6 597 70.0
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 6.5e-236 820.8 584 70.9
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 1.1e-235 820.1 599 69.3
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 1.9e-235 819.3 602 70.1
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.9e-235 819.3 601 69.2
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 4.2e-235 818.1 600 68.8
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 4.2e-235 818.1 600 69.2
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 5.5e-235 817.8 604 69.0
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 2.1e-234 815.8 574 72.1
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 2.1e-234 815.8 602 69.8
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 2.7e-234 815.5 602 68.9
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 3.6e-234 815.1 617 67.9
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 4.7e-234 814.7 603 69.0
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 6.1e-234 814.3 602 68.9
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 8.0e-234 813.9 601 68.6
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 1.8e-233 812.8 600 67.8
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 4.0e-233 811.6 601 68.4
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 4.0e-233 811.6 601 68.7
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 1.2e-232 810.1 600 69.0
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 3.4e-232 808.5 600 68.3
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 4.4e-232 808.1 600 68.3
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 5.7e-232 807.7 601 68.4
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.3e-231 806.6 629 65.7
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 1.7e-231 806.2 596 68.3
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 2.2e-231 805.8 603 68.0
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 3.7e-231 805.1 600 67.7
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 8.3e-231 803.9 600 66.7
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.1e-230 803.5 602 68.6
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.1e-230 803.5 602 68.6
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.1e-230 803.5 602 68.6
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 3.5e-229 798.5 596 69.5
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 5.9e-229 797.7 602 68.6
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 1.7e-228 796.2 602 68.8
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 2.3e-228 795.8 603 67.8
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 2.3e-228 795.8 603 66.7
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 2.5e-227 792.3 602 67.8
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 2.5e-227 792.3 600 67.0
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 3.3e-227 792.0 602 68.4
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 1.2e-226 790.0 603 67.0
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.6e-226 789.6 602 67.6
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 2.8e-226 788.9 603 66.7
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 4.7e-226 788.1 579 69.3
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.4e-225 786.6 596 66.6
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 6.8e-225 784.3 608 66.9
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 2.0e-224 782.7 608 66.8
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 2.6e-224 782.3 618 64.4
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 3.4e-224 781.9 581 67.6
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 3.4e-224 781.9 603 67.0
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 5.7e-224 781.2 600 66.0
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 9.8e-224 780.4 599 65.4
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 2.2e-223 779.2 620 65.6
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 4.9e-223 778.1 600 65.3
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.4e-222 776.5 607 66.2
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.6e-221 773.1 599 66.8
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 4.6e-221 771.5 599 64.8
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 5.9e-221 771.2 615 66.2
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 5.9e-221 771.2 591 64.6
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 1.0e-220 770.4 599 64.1
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 1.2e-218 763.5 557 69.1
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 1.4e-217 760.0 594 64.5
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 1.4e-217 760.0 603 65.0
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 2.3e-217 759.2 576 68.1
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 2.3e-217 759.2 585 65.5
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 3.7e-215 751.9 596 64.4
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 3.7e-215 751.9 602 63.8
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 1.1e-214 750.4 596 64.6
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.9e-214 749.6 645 61.2
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 5.2e-209 731.5 606 63.4
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 2.6e-208 729.2 605 63.0
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 2.6e-208 729.2 583 63.8
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 7.3e-203 711.1 533 67.2
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.6e-202 709.9 588 62.6
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 3.4e-200 702.2 600 60.3
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 7.1e-198 694.5 603 60.4
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 9.2e-198 694.1 600 58.0
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.1e-195 687.2 588 61.2
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 7.3e-195 684.5 531 64.4
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 6.4e-191 671.4 485 69.5
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.4e-185 652.9 392 81.1
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.0e-184 649.8 592 55.2
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.4e-177 626.3 606 55.8
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 4.9e-167 592.0 397 74.1
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 7.1e-166 588.2 403 72.0
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.2e-165 587.4 593 50.3
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 2.1e-165 586.6 588 51.7
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 4.3e-163 578.9 476 63.4
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 1.0e-151 541.2 596 49.2
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 5.0e-151 538.9 591 48.6
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 1.3e-143 514.2 323 77.4
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.6e-139 500.0 529 48.6
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.3e-122 444.5 334 66.8
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 8.3e-122 441.8 308 72.7
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 2.6e-115 420.2 365 60.5
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.3e-114 415.6 379 57.8
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 5.9e-112 409.1 267 72.7
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 6.6e-111 405.6 364 58.2
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 1.1e-110 404.8 311 65.9
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 8.6e-103 378.6 245 77.1
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 1.4e-100 371.3 238 77.7
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 2.3e-100 370.5 313 60.4
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 6.6e-95 352.4 275 64.7
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 1.5e-78 298.1 267 57.3
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 1.6e-72 278.1 242 62.0
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 2.5e-54 217.6 140 77.9
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 3.4e-51 207.2 179 58.1
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.3e-46 190.7 128 71.1
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.8e-45 187.6 128 70.3
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.7e-45 187.2 128 70.3
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.4e-44 185.3 128 69.5
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.4e-44 184.5 128 68.8
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 6.7e-39 166.4 98 78.6
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 1.1e-36 159.1 98 75.5
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 2.9e-26 124.4 105 59.0
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 4.4e-22 110.5 63 79.4
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 4.4e-22 110.5 63 81.0
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 2.2e-21 108.2 71 70.4
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 1.1e-20 105.9 63 77.8
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 4.2e-17 94.0 73 61.6
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 5.5e-17 93.6 63 69.8
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 7.2e-17 93.2 63 69.8
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 1.2e-16 92.4 57 68.4
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 5.7e-14 83.6 537 22.3
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 7.5e-14 83.2 54 74.1
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 5.3e-12 77.0 54 64.8
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 5.3e-12 77.0 532 22.4
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 4.2e-09 67.4 54 51.9
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 5.2e-07 60.5 64 57.8
ECA247G1273 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.5e-06 58.9 61 45.9


User provided reference genes

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