Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 0.0e+00 1154.4 567 100.0
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 7.6e-258 893.6 545 77.8
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 1.9e-248 862.4 558 75.4
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 9.6e-245 850.1 556 75.9
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 1.3e-244 849.7 552 75.0
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 5.8e-242 840.9 563 72.8
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 9.9e-242 840.1 553 73.8
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.3e-241 839.7 553 73.1
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 2.2e-241 839.0 552 74.3
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.2e-241 839.0 555 73.5
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 8.4e-241 837.0 553 74.3
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.4e-240 836.3 553 73.1
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 1.4e-240 836.3 554 73.6
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 5.5e-240 834.3 553 74.0
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 2.1e-239 832.4 553 72.2
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 6.0e-239 830.9 553 73.8
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 7.9e-239 830.5 555 72.8
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 6.7e-238 827.4 554 73.3
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 8.7e-238 827.0 553 72.5
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.5e-237 825.5 580 69.7
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 4.3e-237 824.7 549 73.2
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 4.3e-237 824.7 556 72.3
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 9.6e-237 823.5 554 72.0
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 9.6e-237 823.5 554 72.0
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.6e-236 822.8 552 71.7
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 2.1e-236 822.4 552 72.6
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 2.1e-236 822.4 554 71.8
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.8e-236 822.0 556 72.1
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 3.7e-236 821.6 571 70.4
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 4.8e-236 821.2 554 71.1
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.8e-235 819.3 556 71.9
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 3.1e-235 818.5 554 72.0
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 6.9e-235 817.4 556 71.8
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 1.2e-234 816.6 538 73.8
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 2.6e-234 815.5 556 71.2
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 1.3e-233 813.1 555 72.1
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 1.3e-233 813.1 556 70.7
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 2.2e-233 812.4 542 72.3
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 2.9e-233 812.0 553 71.8
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 4.9e-233 811.2 555 71.4
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 1.4e-232 809.7 555 71.4
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 1.9e-232 809.3 554 71.3
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 2.5e-232 808.9 556 71.0
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.2e-231 806.6 558 72.4
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 1.6e-231 806.2 554 72.0
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 2.1e-231 805.8 561 72.0
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 3.5e-231 805.1 536 73.5
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 1.3e-230 803.1 555 69.9
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 1.3e-230 803.1 553 71.1
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.8e-230 802.7 556 70.1
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.8e-230 802.7 572 68.7
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 3.0e-230 802.0 561 70.4
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 6.7e-230 800.8 538 71.9
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 1.5e-229 799.7 555 72.1
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 1.9e-229 799.3 555 71.0
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 1.9e-229 799.3 574 69.2
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 2.5e-229 798.9 557 69.8
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 2.5e-229 798.9 555 69.5
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 4.3e-229 798.1 556 69.6
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 7.4e-229 797.3 561 70.2
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 7.4e-229 797.3 553 71.2
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 2.2e-228 795.8 556 70.5
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 6.3e-228 794.3 553 71.1
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 1.4e-227 793.1 556 69.4
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 2.4e-227 792.3 554 70.2
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 2.4e-227 792.3 557 70.2
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 3.1e-227 792.0 557 70.7
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 4.1e-227 791.6 553 70.2
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 6.9e-227 790.8 554 70.4
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 2.0e-226 789.3 596 66.6
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 5.9e-226 787.7 554 68.4
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 5.9e-226 787.7 553 69.6
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 2.9e-225 785.4 555 69.0
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 2.9e-225 785.4 556 69.6
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.9e-225 785.4 555 69.4
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.9e-225 785.4 555 69.4
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.9e-225 785.4 555 69.4
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 3.8e-225 785.0 559 68.3
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 6.5e-225 784.3 554 69.0
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 1.1e-224 783.5 554 69.7
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 1.4e-224 783.1 559 68.9
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 9.4e-224 780.4 557 68.6
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 2.1e-223 779.2 555 68.8
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 2.1e-223 779.2 557 68.4
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 2.1e-223 779.2 555 69.2
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 3.6e-223 778.5 555 69.4
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.4e-222 776.5 554 68.8
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 3.0e-222 775.4 555 68.5
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 3.9e-222 775.0 555 68.5
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 3.9e-222 775.0 555 68.8
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.5e-221 773.1 553 68.5
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 7.4e-221 770.8 555 68.5
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 2.2e-220 769.2 553 68.5
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.8e-220 768.8 596 65.6
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 6.3e-220 767.7 557 69.1
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 4.1e-219 765.0 561 67.7
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 6.9e-219 764.2 561 67.7
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 2.6e-218 762.3 553 68.2
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 3.4e-218 761.9 573 66.5
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 1.7e-217 759.6 563 68.0
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 1.1e-216 756.9 551 67.3
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 1.1e-216 756.9 515 70.7
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 1.4e-216 756.5 551 67.3
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 6.1e-215 751.1 558 66.3
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 7.9e-215 750.7 538 67.5
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 1.8e-214 749.6 527 69.8
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.7e-212 743.0 560 64.6
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 6.3e-212 741.1 560 67.5
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 1.0e-209 733.8 542 66.4
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.5e-208 729.2 554 65.7
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 3.6e-207 725.3 559 65.1
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 8.0e-207 724.2 555 66.3
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 5.7e-205 718.0 490 71.6
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 5.0e-201 704.9 562 63.5
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.4e-198 696.8 488 68.2
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.4e-197 692.2 540 65.0
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 4.4e-197 691.8 438 76.0
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.3e-190 669.5 540 63.3
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 8.3e-188 661.0 549 58.8
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 3.9e-177 625.5 386 78.2
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.6e-177 624.8 562 58.2
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 3.7e-172 609.0 548 54.4
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 8.3e-172 607.8 432 70.8
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.1e-168 597.4 387 73.9
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 1.0e-161 574.3 543 53.4
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 6.8e-158 561.6 388 70.4
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 7.1e-155 551.6 557 52.6
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 9.6e-152 541.2 548 51.3
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 8.1e-151 538.1 484 54.3
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 8.1e-143 511.5 322 76.1
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 7.6e-133 478.4 288 80.9
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.9e-128 463.8 290 76.2
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 5.8e-125 452.2 336 66.4
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 3.2e-123 446.4 320 67.8
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 1.0e-121 441.4 304 71.1
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 1.0e-121 441.4 323 65.0
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 4.8e-103 379.4 270 69.6
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.7e-100 370.9 274 66.8
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 2.1e-90 337.4 234 70.1
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.6e-88 330.5 242 66.9
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 5.3e-86 322.8 234 68.8
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 9.1e-78 295.4 240 63.8
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 2.5e-75 287.3 263 57.0
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 6.8e-49 199.5 137 70.1
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.2e-48 198.7 139 68.3
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.4e-48 197.2 138 68.8
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 7.5e-48 196.1 139 67.6
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 6.4e-47 193.0 179 54.2
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 1.3e-44 185.3 140 64.3
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.3e-43 180.6 128 68.0
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 1.2e-34 152.1 98 71.4
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 3.6e-34 150.6 118 61.0
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 1.1e-22 112.5 105 54.3
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 9.6e-19 99.4 63 71.4
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.6e-18 98.6 65 72.3
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.8e-18 97.1 65 70.8
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 6.2e-18 96.7 63 68.3
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 3.1e-17 94.4 71 60.6
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 1.5e-16 92.0 63 66.7
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 7.1e-14 83.2 245 26.1
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 9.3e-14 82.8 494 24.3
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 2.7e-13 81.3 73 52.1
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 4.6e-13 80.5 57 59.6
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 6.7e-12 76.6 433 24.0
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 2.8e-10 71.2 54 63.0
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 2.4e-09 68.2 508 24.0
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 4.9e-07 60.5 52 50.0


User provided reference genes

Program Settings