Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 3.3e-270 934.5 481 100.0
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 4.0e-183 645.2 500 68.2
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 4.0e-167 592.0 502 62.9
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.6e-152 543.5 496 58.3
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 3.6e-152 542.3 552 56.7
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 2.0e-150 536.6 496 57.9
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 5.8e-150 535.0 501 57.7
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 7.6e-150 534.6 507 57.8
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 7.6e-150 534.6 507 58.0
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 6.4e-149 531.6 495 57.6
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 6.4e-149 531.6 496 57.1
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 8.4e-149 531.2 496 57.7
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 1.1e-148 530.8 491 60.1
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 1.1e-148 530.8 501 57.5
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 1.9e-148 530.0 495 58.8
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 1.9e-148 530.0 502 57.2
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 5.1e-146 521.9 499 57.9
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 1.1e-145 520.8 494 57.9
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 1.1e-145 520.8 495 55.2
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.5e-145 520.4 475 58.9
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 1.5e-145 520.4 520 56.0
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 1.5e-145 520.4 446 61.4
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 5.6e-145 518.5 496 57.5
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 9.6e-145 517.7 507 57.6
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 8.1e-144 514.6 499 57.1
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 8.1e-144 514.6 499 55.3
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 1.1e-143 514.2 499 56.3
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 1.8e-143 513.5 513 55.0
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 2.4e-143 513.1 498 56.6
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 2.4e-143 513.1 495 57.4
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.4e-143 513.1 498 58.0
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 4.0e-143 512.3 511 55.4
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 1.2e-142 510.8 474 57.8
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 1.5e-142 510.4 498 56.4
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 3.4e-142 509.2 496 54.6
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 1.7e-141 506.9 497 55.3
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 4.9e-141 505.4 488 57.4
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 6.4e-141 505.0 494 55.3
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 6.4e-141 505.0 510 55.7
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 6.4e-141 505.0 493 55.8
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 6.4e-141 505.0 492 56.3
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 5.4e-140 501.9 498 54.4
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 5.4e-140 501.9 496 55.2
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 1.2e-139 500.7 465 58.3
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 4.6e-139 498.8 498 55.2
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 4.6e-139 498.8 498 56.4
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 1.3e-138 497.3 494 55.3
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 1.3e-138 497.3 453 58.3
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 1.8e-138 496.9 492 54.7
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 1.9e-137 493.4 492 55.1
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 3.3e-137 492.7 447 59.3
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 1.6e-136 490.3 506 55.1
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 2.8e-136 489.6 500 54.6
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 6.2e-136 488.4 506 54.9
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 1.1e-135 487.6 466 56.2
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 5.8e-134 481.9 496 53.8
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 7.6e-134 481.5 490 53.7
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 2.2e-133 479.9 479 54.7
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 1.6e-131 473.8 578 49.1
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 1.6e-131 473.8 472 56.6
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 7.9e-131 471.5 493 51.1
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 5.1e-130 468.8 405 62.2
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 5.1e-130 468.8 485 54.2
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 3.3e-129 466.1 470 54.7
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 4.3e-129 465.7 494 52.0
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 4.3e-129 465.7 499 52.1
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.3e-128 464.2 487 54.0
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 1.3e-128 464.2 506 53.6
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 1.6e-128 463.8 491 53.0
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 4.8e-128 462.2 486 53.3
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 6.2e-128 461.8 493 51.9
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 4.5e-126 455.7 500 51.6
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 5.8e-126 455.3 496 51.8
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 1.3e-125 454.1 520 50.0
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 2.2e-125 453.4 493 50.9
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 3.8e-125 452.6 412 57.8
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 1.1e-124 451.1 495 51.3
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 1.4e-124 450.7 496 50.0
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 5.5e-124 448.7 412 56.3
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 2.7e-123 446.4 498 49.8
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 8.7e-122 441.4 400 61.2
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 7.4e-121 438.3 497 50.3
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 9.7e-121 438.0 497 50.3
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 1.8e-119 433.7 432 55.6
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 2.4e-119 433.3 498 50.2
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 3.1e-119 433.0 524 48.7
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 4.1e-119 432.6 494 53.0
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 7.7e-118 428.3 498 50.0
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 7.7e-118 428.3 498 50.0
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 1.7e-117 427.2 495 49.7
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 1.1e-116 424.5 500 49.4
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 5.1e-114 415.6 493 48.9
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 3.7e-112 409.5 364 60.7
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 1.1e-111 407.9 505 49.5
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.2e-107 394.4 486 45.9
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 2.7e-107 393.3 361 59.8
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 2.7e-107 393.3 486 45.7
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 4.7e-107 392.5 395 52.4
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 2.0e-105 387.1 361 57.1
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 2.2e-96 357.1 494 43.7
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 4.4e-89 332.8 490 41.0
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 2.4e-87 327.0 401 48.1
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 2.7e-86 323.6 489 44.6
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 4.5e-86 322.8 255 63.5
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 2.5e-84 317.0 358 50.0
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.4e-82 311.2 289 57.4
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 5.2e-66 256.1 498 35.9
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 4.6e-62 243.0 253 58.5
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 5.0e-61 239.6 431 36.9
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.5e-60 237.3 186 66.7
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 3.2e-55 220.3 132 83.3
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 4.1e-55 219.9 277 45.8
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 1.9e-52 211.1 484 32.9
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 1.8e-50 204.5 277 44.0
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 4.9e-48 196.4 171 58.5
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 6.4e-48 196.1 342 38.9
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 4.1e-47 193.4 236 48.3
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 1.9e-44 184.5 132 68.2
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 3.0e-37 160.6 241 42.3
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 3.0e-37 160.6 280 38.6
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 2.5e-36 157.5 266 36.8
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 3.1e-34 150.6 105 66.7
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 2.6e-33 147.5 384 31.8
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 5.8e-33 146.4 132 59.8
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 1.3e-29 135.2 139 56.1
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 2.4e-26 124.4 153 51.6
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 1.2e-25 122.1 109 63.3
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 5.5e-23 113.2 168 39.9
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 2.4e-18 97.8 132 43.9
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 7.9e-14 82.8 130 34.6
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 1.5e-12 78.6 109 47.7
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 2.1e-11 74.7 453 21.2
C05p32060 Brassica napus HOM05D005719 ORTHO05D007030 6.5e-08 63.2 89 47.2
BolC5t31933H Brassica oleracea HOM05D005719 ORTHO05D007030 6.5e-08 63.2 89 47.2
Pp3c4_19380 Physcomitrium patens HOM05D005719 ORTHO05D007030 1.6e-06 58.5 103 36.9


User provided reference genes

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