Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 1.2e-297 1025.8 515 100.0
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 1.9e-170 603.2 514 64.4
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 1.8e-157 560.1 510 60.2
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 5.3e-157 558.5 531 58.2
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.1e-154 550.8 512 60.2
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.1e-153 546.6 512 59.8
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 3.5e-153 545.8 514 58.0
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 3.0e-152 542.7 518 57.7
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 6.6e-152 541.6 516 57.0
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 8.7e-152 541.2 522 54.8
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 2.5e-151 539.7 511 55.8
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 1.5e-148 530.4 515 56.1
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 2.0e-148 530.0 521 54.9
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 2.6e-148 529.6 518 54.2
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 2.6e-148 529.6 563 52.9
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 5.8e-148 528.5 515 55.3
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 5.8e-148 528.5 515 54.8
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 9.9e-148 527.7 502 55.8
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 9.9e-148 527.7 513 55.6
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 1.3e-147 527.3 526 55.5
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 3.8e-147 525.8 511 56.9
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 1.9e-146 523.5 523 54.5
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 5.4e-146 521.9 504 55.8
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 9.3e-146 521.2 530 55.3
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 3.5e-145 519.2 511 55.4
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 4.6e-145 518.8 513 54.6
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 7.9e-145 518.1 520 53.7
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.8e-144 516.9 513 54.6
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 2.3e-144 516.5 512 55.1
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 3.0e-144 516.2 516 55.0
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 6.7e-144 515.0 524 54.6
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 1.5e-143 513.8 515 56.1
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 3.3e-143 512.7 556 52.9
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 7.4e-143 511.5 554 51.4
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 7.4e-143 511.5 516 54.7
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 7.4e-143 511.5 507 54.2
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 9.6e-143 511.1 505 54.5
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 1.3e-142 510.8 505 54.5
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.6e-142 510.4 516 53.9
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 3.7e-142 509.2 510 52.5
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.1e-141 507.7 512 54.1
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 1.4e-141 507.3 582 49.3
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 1.8e-141 506.9 500 53.0
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 2.4e-141 506.5 517 54.7
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 5.3e-141 505.4 512 52.7
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 2.0e-140 503.4 518 52.5
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 3.4e-140 502.7 503 53.1
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 4.5e-140 502.3 503 54.3
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 7.6e-140 501.5 505 53.9
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 1.7e-139 500.4 491 55.2
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 2.2e-139 500.0 505 53.3
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 4.9e-139 498.8 527 52.8
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 6.4e-139 498.4 516 53.1
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 7.1e-138 495.0 513 51.5
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 9.3e-138 494.6 513 54.0
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 9.3e-138 494.6 524 52.5
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 2.1e-137 493.4 536 52.1
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 2.7e-137 493.0 533 52.3
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 2.7e-137 493.0 512 51.2
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 3.5e-137 492.7 516 51.7
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 3.5e-137 492.7 507 53.1
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 4.6e-137 492.3 516 51.4
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 7.9e-137 491.5 515 53.2
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 3.0e-136 489.6 508 53.0
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.1e-135 487.6 516 51.9
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 1.5e-135 487.3 511 52.3
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 3.3e-135 486.1 526 51.9
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 6.2e-134 481.9 541 47.5
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 6.2e-134 481.9 517 53.6
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 5.3e-133 478.8 520 52.3
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 1.5e-132 477.2 555 49.7
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 1.5e-132 477.2 504 51.8
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 2.6e-132 476.5 503 51.7
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 4.5e-132 475.7 501 51.5
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 7.6e-132 474.9 502 52.0
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 2.2e-131 473.4 515 49.9
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 2.9e-131 473.0 504 52.2
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 1.1e-130 471.1 538 48.1
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 1.4e-130 470.7 496 51.4
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 1.4e-130 470.7 486 54.3
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 2.5e-130 469.9 503 51.5
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 4.2e-130 469.2 496 51.2
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 1.8e-128 463.8 497 51.3
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 2.3e-128 463.4 498 51.0
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 3.0e-128 463.0 502 50.2
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 5.1e-128 462.2 502 51.2
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 5.1e-128 462.2 478 51.7
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 4.3e-127 459.1 496 50.0
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 9.7e-127 458.0 496 50.2
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 1.4e-125 454.1 498 50.8
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 1.4e-125 454.1 498 50.8
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 2.4e-125 453.4 497 50.9
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 3.1e-125 453.0 504 49.2
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 3.1e-125 453.0 496 49.8
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 9.0e-125 451.4 496 49.8
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 2.1e-121 440.3 505 50.3
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 2.7e-121 439.9 487 51.3
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 5.1e-120 435.6 518 48.6
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 9.7e-119 431.4 506 49.4
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 6.3e-118 428.7 547 46.3
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 1.4e-117 427.6 542 45.9
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 3.1e-117 426.4 555 47.0
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 2.6e-116 423.3 537 46.9
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 1.0e-112 411.4 456 50.2
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 1.5e-106 391.0 411 51.6
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 5.7e-103 379.0 503 44.1
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 1.7e-102 377.5 440 47.5
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 2.3e-96 357.1 516 41.5
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 2.9e-91 340.1 378 50.3
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.1e-90 338.2 360 50.6
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 1.0e-88 331.6 422 45.3
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 3.0e-88 330.1 559 37.7
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 4.2e-82 309.7 436 44.7
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 1.2e-81 308.1 544 37.7
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 4.1e-77 293.1 596 33.1
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.2e-76 291.6 338 48.2
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 2.1e-65 254.2 677 30.4
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 3.5e-60 236.9 594 31.1
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 1.4e-48 198.4 531 29.9
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 6.8e-48 196.1 526 27.8
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 2.5e-42 177.6 569 27.6
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.1e-40 172.2 239 43.5
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 3.4e-39 167.2 239 45.2
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 3.5e-36 157.1 225 41.8
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 2.0e-31 141.4 219 41.6
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 3.4e-23 114.0 119 50.4
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.2e-20 105.5 90 58.9
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 1.3e-19 102.1 263 32.7
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 8.7e-19 99.4 263 31.9
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.0e-15 88.2 74 54.1
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 5.0e-14 83.6 233 27.0
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 1.4e-13 82.0 124 41.9
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 2.7e-12 77.8 91 51.6
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 3.5e-12 77.4 65 61.5
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 1.0e-11 75.9 239 28.5
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 1.8e-11 75.1 114 46.5
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 1.5e-10 72.0 112 42.9
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 5.7e-10 70.1 114 43.9
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 1.8e-08 65.1 144 33.3
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 2.4e-08 64.7 39 69.2
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 5.9e-07 60.1 92 45.7
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 7.7e-07 59.7 34 79.4
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.7e-06 58.5 92 43.5
BolC4t25844H Brassica oleracea HOM05D004999 ORTHO05D021597 1.7e-06 58.5 50 56.0


User provided reference genes

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