Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05201 Selenicereus undatus HOM05D007166 ORTHO05D009039 3.0e-43 178.3 104 100.0
Manes.18G014600 Manihot esculenta HOM05D007166 ORTHO05D009039 1.1e-18 96.7 81 65.4
EL10Ac5g11627 Beta vulgaris HOM05D007166 ORTHO05D009039 1.3e-17 93.2 100 60.0
Duzib116G0210 Durio zibethinus HOM05D007166 ORTHO05D009039 1.4e-16 89.7 99 52.5
PGR031G2037 Punica granatum HOM05D007166 ORTHO05D009039 1.4e-16 89.7 95 54.7
Dinv31833 Davidia involucrata HOM05D007166 ORTHO05D009039 3.1e-16 88.6 61 72.1
CiPaw.08G065500 Carya illinoinensis HOM05D007166 ORTHO05D009039 5.3e-16 87.8 58 75.9
Haze_22621 Corylus avellana HOM05D007166 ORTHO05D009039 5.3e-16 87.8 58 75.9
GSVIVG01009888001 Vitis vinifera HOM05D007166 ORTHO05D009039 6.9e-16 87.4 99 54.5
Thecc.08G042800 Theobroma cacao HOM05D007166 ORTHO05D009039 9.0e-16 87.0 61 73.8
TWI56G1425 Tripterygium wilfordii HOM05D007166 ORTHO05D009039 9.0e-16 87.0 99 52.5
Ciclev10002412m.g Citrus clementina HOM05D007166 ORTHO05D009039 1.2e-15 86.7 56 80.4
Cfa013938 Carpinus fangiana HOM05D007166 ORTHO05D009039 1.5e-15 86.3 53 81.1
Cc10_g01790 Coffea canephora HOM05D007166 ORTHO05D009039 1.5e-15 86.3 99 53.5
MD15G1013500 Malus domestica HOM05D007166 ORTHO05D009039 1.5e-15 86.3 92 57.6
CANSAT25G3739 Cannabis sativa HOM05D007166 ORTHO05D009039 2.0e-15 85.9 94 64.9
Prupe.1G367000 Prunus persica HOM05D007166 ORTHO05D009039 2.0e-15 85.9 100 55.0
TAR628G0810 Trochodendron aralioides HOM05D007166 ORTHO05D009039 5.9e-15 84.3 61 72.1
COL.COLO4_26159 Corchorus olitorius HOM05D007166 ORTHO05D009039 7.7e-15 84.0 57 75.4
QL02p011380 Quercus lobata HOM05D007166 ORTHO05D009039 7.7e-15 84.0 92 54.3
Potri.005G237800 Populus trichocarpa HOM05D007166 ORTHO05D009039 1.0e-14 83.6 67 68.7
ClCG05G018350 Citrullus lanatus HOM05D007166 ORTHO05D009039 1.3e-14 83.2 103 50.5
MSTRG.1201 Avicennia marina HOM05D007166 ORTHO05D009039 1.7e-14 82.8 58 69.0
Duzib093G1587 Durio zibethinus HOM05D007166 ORTHO05D009039 1.7e-14 82.8 100 49.0
Gohir.D06G000600 Gossypium hirsutum HOM05D007166 ORTHO05D009039 1.7e-14 82.8 99 54.5
Gorai.010G005000 Gossypium raimondii HOM05D007166 ORTHO05D009039 1.7e-14 82.8 99 54.5
Potri.002G023600 Populus trichocarpa HOM05D007166 ORTHO05D009039 2.2e-14 82.4 60 71.7
MD08G1014000 Malus domestica HOM05D007166 ORTHO05D009039 2.9e-14 82.0 92 55.4
Lsat_1_v5_gn_9_46261 Lactuca sativa HOM05D007166 ORTHO05D009039 3.8e-14 81.6 101 50.5
Sabra02G0019200 Salix brachista HOM05D007166 ORTHO05D009039 3.8e-14 81.6 63 68.3
Gohir.A06G004800 Gossypium hirsutum HOM05D007166 ORTHO05D009039 5.0e-14 81.3 99 53.5
FvH4_2g38630 Fragaria vesca HOM05D007166 ORTHO05D009039 6.5e-14 80.9 56 73.2
Atru.chr13.311 Acer truncatum HOM05D007166 ORTHO05D009039 8.5e-14 80.5 94 55.3
Oeu007334.1 Olea europaea HOM05D007166 ORTHO05D009039 8.5e-14 80.5 99 51.5
Zm00001eb081060 Zea mays HOM05D007166 ORTHO05D009039 1.1e-13 80.1 66 65.2
Nn5g29333 Nelumbo nucifera HOM05D007166 ORTHO05D009039 1.4e-13 79.7 95 50.5
MELO3C003759.2 Cucumis melo HOM05D007166 ORTHO05D009039 2.5e-13 79.0 103 49.5
Nitab4.5_0001540g0050 Nicotiana tabacum HOM05D007166 ORTHO05D009039 2.5e-13 79.0 92 50.0
unitig_46.g17964 Utricularia gibba HOM05D007166 ORTHO05D009039 2.5e-13 79.0 56 69.6
RcHm_v2.0_Chr6g0302691 Rosa chinensis HOM05D007166 ORTHO05D009039 3.2e-13 78.6 56 71.4
SGA_v2.0_scaffold92G28245 Striga asiatica HOM05D007166 ORTHO05D009039 4.2e-13 78.2 58 65.5
CsaV3_3G045770 Cucumis sativus L. HOM05D007166 ORTHO05D009039 5.5e-13 77.8 103 48.5
FAN20G1945 Fragaria x ananassa HOM05D007166 ORTHO05D009039 5.5e-13 77.8 47 83.0
Sed0018016 Sechium edule HOM05D007166 ORTHO05D009039 5.5e-13 77.8 60 63.3
CAN.G311.15 Capsicum annuum HOM05D007166 ORTHO05D009039 7.2e-13 77.4 55 65.5
Os03g0244000 Oryza sativa ssp. japonica HOM05D007166 ORTHO05D009039 7.2e-13 77.4 66 63.6
AUR62037091 Chenopodium quinoa HOM05D007166 ORTHO05D009039 1.2e-12 76.6 103 49.5
Thhalv10019268m.g Eutrema salsugineum HOM05D007166 ORTHO05D009039 1.6e-12 76.3 62 64.5
Peaxi162Scf00438g00619 Petunia axillaris HOM05D007166 ORTHO05D009039 1.6e-12 76.3 57 61.4
AT1G75690 Arabidopsis thaliana HOM05D007166 ORTHO05D009039 2.1e-12 75.9 58 67.2
CSS0019896 Camellia sinensis var. sinensis HOM05D007166 ORTHO05D009039 2.1e-12 75.9 100 50.0
CARHR069090 Cardamine hirsuta HOM05D007166 ORTHO05D009039 2.1e-12 75.9 58 67.2
Sp5g30800 Schrenkiella parvula HOM05D007166 ORTHO05D009039 2.1e-12 75.9 58 67.2
THA.LOC104813791 Tarenaya hassleriana HOM05D007166 ORTHO05D009039 2.1e-12 75.9 63 66.7
AL2G35670 Arabidopsis lyrata HOM05D007166 ORTHO05D009039 3.6e-12 75.1 59 66.1
BcaC08g47053 Brassica carinata HOM05D007166 ORTHO05D009039 3.6e-12 75.1 59 64.4
A07p41210 Brassica napus HOM05D007166 ORTHO05D009039 3.6e-12 75.1 59 64.4
C06p49630 Brassica napus HOM05D007166 ORTHO05D009039 3.6e-12 75.1 59 64.4
BolC6t40002H Brassica oleracea HOM05D007166 ORTHO05D009039 3.6e-12 75.1 59 64.4
BraA07t31656Z Brassica rapa HOM05D007166 ORTHO05D009039 3.6e-12 75.1 59 64.4
Glyma.14G218200 Glycine max HOM05D007166 ORTHO05D009039 3.6e-12 75.1 58 67.2
Phvul.001G007500 Phaseolus vulgaris HOM05D007166 ORTHO05D009039 3.6e-12 75.1 60 68.3
VMungo0647G2551 Vigna mungo HOM05D007166 ORTHO05D009039 3.6e-12 75.1 56 69.6
Migut.C00807 Erythranthe guttata HOM05D007166 ORTHO05D009039 6.1e-12 74.3 99 50.5
Carub.0002s2253 Capsella rubella HOM05D007166 ORTHO05D009039 1.0e-11 73.6 59 64.4
Lalb_Chr22g0354371 Lupinus albus HOM05D007166 ORTHO05D009039 1.4e-11 73.2 58 65.5
Sopen04g034940 Solanum pennellii HOM05D007166 ORTHO05D009039 1.4e-11 73.2 101 43.6
BcaB05g24933 Brassica carinata HOM05D007166 ORTHO05D009039 1.8e-11 72.8 55 67.3
BcaC03g15610 Brassica carinata HOM05D007166 ORTHO05D009039 2.3e-11 72.4 59 61.0
C02p33780 Brassica napus HOM05D007166 ORTHO05D009039 2.3e-11 72.4 59 61.0
PSO170G1901 Papaver somniferum HOM05D007166 ORTHO05D009039 3.0e-11 72.0 91 49.5
PGSC0003DMG400003776 Solanum tuberosum HOM05D007166 ORTHO05D009039 3.0e-11 72.0 61 55.7
PSO700G0103 Papaver somniferum HOM05D007166 ORTHO05D009039 3.9e-11 71.6 93 48.4
A02p20150 Brassica napus HOM05D007166 ORTHO05D009039 5.1e-11 71.2 55 63.6
BolC2t09326H Brassica oleracea HOM05D007166 ORTHO05D009039 5.1e-11 71.2 59 61.0
BraA02t07050Z Brassica rapa HOM05D007166 ORTHO05D009039 5.1e-11 71.2 55 63.6
Glyma.17G257400 Glycine max HOM05D007166 ORTHO05D009039 5.1e-11 71.2 56 66.1
Lj4A797T62 Lonicera japonica HOM05D007166 ORTHO05D009039 6.7e-11 70.9 65 61.5
Medtr1g024840 Medicago truncatula HOM05D007166 ORTHO05D009039 6.7e-11 70.9 62 64.5
TPR.G34359 Trifolium pratense HOM05D007166 ORTHO05D009039 6.7e-11 70.9 89 50.6
Eucgr.F00601 Eucalyptus grandis HOM05D007166 ORTHO05D009039 8.8e-11 70.5 58 63.8
Solyc04g081320.4 Solanum lycopersicum HOM05D007166 ORTHO05D009039 8.8e-11 70.5 101 42.6
arahy.Tifrunner.gnm1.ann1.74SAHL Arachis hypogaea HOM05D007166 ORTHO05D009039 1.5e-10 69.7 46 73.9
Cpa.g.sc1059.4 Carica papaya HOM05D007166 ORTHO05D009039 1.5e-10 69.7 99 46.5
CDE02G3586 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 1.5e-10 69.7 55 67.3
ECA232G5036 Erigeron canadensis HOM05D007166 ORTHO05D009039 2.0e-10 69.3 60 60.0
DCAR_017474 Daucus carota HOM05D007166 ORTHO05D009039 3.3e-10 68.6 53 67.9
HanXRQChr05g0146521 Helianthus annuus HOM05D007166 ORTHO05D009039 9.7e-10 67.0 96 46.9
Rhsim06G0022200 Rhododendron simsii HOM05D007166 ORTHO05D009039 1.7e-09 66.2 100 41.0
Actinidia15414 Actinidia chinensis HOM05D007166 ORTHO05D009039 2.2e-09 65.9 51 66.7
CDE02G4515 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 2.8e-09 65.5 50 70.0
Aa31LG4G5920 Aethionema arabicum HOM05D007166 ORTHO05D009039 6.3e-09 64.3 51 64.7
HPP92_015209 Vanilla planifolia HOM05D007166 ORTHO05D009039 3.1e-08 62.0 43 69.8
HPP92_015221 Vanilla planifolia HOM05D007166 ORTHO05D009039 3.1e-08 62.0 43 69.8
FAN15G1492 Fragaria x ananassa HOM05D007166 ORTHO05D009039 4.1e-08 61.6 95 43.2
Mapoly0005s0157 Marchantia polymorpha HOM05D007166 ORTHO05D009039 4.1e-08 61.6 50 56.0
Thecc.09G255600 Theobroma cacao HOM05D007166 ORTHO05D009039 9.1e-08 60.5 61 57.4
AUR62036485 Chenopodium quinoa HOM05D007166 ORTHO05D009039 2.6e-07 58.9 80 48.8
EL10Ac4g08279 Beta vulgaris HOM05D007166 ORTHO05D009039 5.9e-07 57.8 71 53.5
SMO165G0060 Selaginella moellendorffii HOM05D007166 ORTHO05D009039 5.9e-07 57.8 59 45.8
Pp3c22_16100 Physcomitrium patens HOM05D007166 ORTHO05D009039 1.0e-06 57.0 58 53.4


User provided reference genes

Program Settings