Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 8.8e-265 916.4 457 100.0
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 2.1e-149 533.1 461 60.7
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 2.3e-148 529.6 460 59.6
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 5.7e-147 525.0 461 59.0
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 1.6e-133 480.3 380 61.3
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 3.6e-125 452.6 468 53.4
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 8.0e-125 451.4 468 52.1
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.7e-122 443.7 468 51.7
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 3.7e-122 442.6 467 52.0
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 4.9e-122 442.2 388 58.0
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 1.6e-117 427.2 467 49.5
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 2.8e-117 426.4 466 49.8
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 1.8e-116 423.7 469 49.0
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 5.2e-116 422.2 468 48.9
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 2.0e-112 410.2 470 48.1
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 2.7e-112 409.8 463 46.7
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 7.8e-112 408.3 465 46.7
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 1.7e-111 407.1 466 47.9
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 1.5e-110 404.1 376 55.3
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 1.1e-108 397.9 467 47.5
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 1.3e-106 391.0 462 46.3
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 6.4e-106 388.7 462 47.0
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 8.3e-106 388.3 460 45.7
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 1.9e-105 387.1 391 51.9
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 6.0e-104 382.1 462 46.3
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 1.0e-103 381.3 388 51.8
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 1.0e-103 381.3 460 46.3
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.3e-103 380.9 464 45.9
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 5.6e-102 375.6 467 46.0
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 5.6e-102 375.6 485 44.7
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 3.6e-101 372.9 370 52.2
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 8.1e-101 371.7 467 44.3
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 8.9e-100 368.2 466 43.3
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 1.2e-99 367.9 475 43.2
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.2e-99 367.9 456 45.0
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 2.6e-99 366.7 456 45.0
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 2.2e-98 363.6 472 44.7
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 2.7e-96 356.7 465 43.0
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 2.7e-96 356.7 472 44.5
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 6.0e-96 355.5 464 42.7
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 7.8e-96 355.1 462 43.7
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 1.0e-95 354.8 468 42.3
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.3e-95 354.4 468 42.1
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 1.3e-95 354.4 386 48.4
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.0e-95 353.2 397 48.6
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 3.0e-95 353.2 466 43.6
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 3.9e-95 352.8 462 43.3
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 5.1e-95 352.4 466 42.1
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.1e-95 352.4 464 43.8
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 6.6e-95 352.1 403 47.4
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 1.1e-94 351.3 467 41.3
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 1.9e-94 350.5 365 51.8
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 2.5e-94 350.1 385 49.4
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.3e-94 349.4 464 42.7
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 5.6e-94 349.0 461 42.7
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.6e-94 349.0 458 43.0
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 9.6e-94 348.2 458 43.4
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 1.2e-93 347.8 464 43.3
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 1.4e-92 344.4 386 47.4
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 4.0e-92 342.8 463 43.4
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.2e-92 342.4 461 43.0
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 5.2e-92 342.4 463 42.3
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.5e-91 340.9 463 42.5
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 4.4e-91 339.3 463 42.3
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 4.4e-91 339.3 463 41.9
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 5.8e-91 339.0 408 45.6
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 2.2e-90 337.0 462 42.2
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 3.8e-90 336.3 380 48.4
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 8.4e-90 335.1 463 41.5
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 8.4e-90 335.1 400 46.2
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 8.4e-90 335.1 459 42.0
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 6.6e-87 325.5 465 40.2
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 1.9e-86 323.9 390 44.9
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 7.3e-86 322.0 382 46.3
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.6e-85 320.9 463 42.3
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.6e-85 319.7 463 40.6
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.6e-85 319.7 463 40.6
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 4.8e-85 319.3 393 44.8
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 8.1e-85 318.5 466 39.1
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.1e-84 318.2 502 39.6
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.4e-84 317.8 387 45.2
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 4.0e-84 316.2 463 41.3
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.3e-84 315.8 446 42.6
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 1.5e-83 314.3 464 38.1
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 3.4e-83 313.2 506 39.3
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 2.9e-82 310.1 376 42.3
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 4.9e-82 309.3 458 39.1
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.2e-81 306.6 382 44.5
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 4.2e-81 306.2 466 37.6
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 3.5e-80 303.1 463 39.7
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 7.9e-80 302.0 467 39.0
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 7.9e-80 302.0 467 37.0
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 3.0e-79 300.1 368 43.8
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 8.7e-79 298.5 461 38.4
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 1.9e-78 297.4 468 37.8
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 9.6e-78 295.0 471 38.0
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 8.1e-77 292.0 472 36.9
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 2.0e-75 287.3 471 36.9
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 5.8e-75 285.8 471 36.7
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 1.1e-73 281.6 332 47.0
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 1.6e-72 277.7 450 36.4
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 1.0e-71 275.0 471 35.5
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 1.8e-71 274.2 410 39.5
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 3.7e-69 266.5 449 35.9
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 5.3e-68 262.7 457 35.4
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 7.6e-67 258.8 466 34.8
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 3.3e-62 243.4 465 33.5
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 4.3e-62 243.0 389 36.5
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 4.5e-59 233.0 376 37.2
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 6.1e-56 222.6 206 54.4
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 2.3e-55 220.7 356 36.8
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 8.8e-55 218.8 406 34.2
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 3.1e-52 210.3 251 45.4
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 4.5e-51 206.5 388 33.2
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 2.9e-50 203.8 432 30.3
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.9e-49 201.1 251 44.2
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 2.6e-46 190.7 379 34.0
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 3.3e-46 190.3 389 31.9
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 6.5e-42 176.0 338 32.8
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 9.4e-41 172.2 438 28.3
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 8.0e-40 169.1 183 43.7
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 3.9e-39 166.8 420 29.3
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.3e-37 161.8 487 27.1
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 1.3e-37 161.8 427 30.0
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 4.1e-36 156.8 395 29.6
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 5.3e-36 156.4 158 51.3
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 2.6e-35 154.1 447 28.4
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 9.4e-33 145.6 153 48.4
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 4.5e-27 126.7 442 28.3
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 1.7e-26 124.8 339 27.4
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.2e-22 112.1 200 35.5
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.1e-20 105.5 236 32.6
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 1.8e-15 88.2 77 54.5
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 5.7e-14 83.2 212 30.2
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 5.7e-14 83.2 62 54.8
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 5.4e-12 76.6 84 40.5
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 4.3e-09 67.0 62 51.6
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.4e-07 62.0 220 25.0
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.8e-07 61.6 82 41.5


User provided reference genes

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