Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05117 Selenicereus undatus HOM05D004614 ORTHO05D005339 1.4e-187 659.4 327 100.0
AUR62036884 Chenopodium quinoa HOM05D004614 ORTHO05D005339 1.1e-64 251.1 431 41.5
Ah.00g000370 Amaranthus hybridus HOM05D004614 ORTHO05D005339 1.8e-62 243.8 445 39.3
AUR62043351 Chenopodium quinoa HOM05D004614 ORTHO05D005339 2.3e-57 226.9 207 58.5
EL10Ac1g01977 Beta vulgaris HOM05D004614 ORTHO05D005339 1.4e-54 217.6 236 52.1
Hund01763 Selenicereus undatus HOM05D004614 ORTHO05D005339 1.8e-49 200.7 430 37.0
Hma1.2p1_0507F.1_g168400 Hydrangea macrophylla HOM05D004614 ORTHO05D005339 5.1e-49 199.1 448 36.4
Duzib116G0199 Durio zibethinus HOM05D004614 ORTHO05D005339 6.7e-49 198.7 451 36.6
Duzib041G0192 Durio zibethinus HOM05D004614 ORTHO05D005339 1.5e-48 197.6 389 38.0
arahy.Tifrunner.gnm1.ann1.7DZ9XI Arachis hypogaea HOM05D004614 ORTHO05D005339 2.0e-48 197.2 434 35.9
Glyma.04G018400 Glycine max HOM05D004614 ORTHO05D005339 2.5e-48 196.8 435 36.3
Glyma.06G018700 Glycine max HOM05D004614 ORTHO05D005339 7.4e-48 195.3 458 36.0
arahy.Tifrunner.gnm1.ann1.MYP9FH Arachis hypogaea HOM05D004614 ORTHO05D005339 9.7e-48 194.9 434 35.7
QL02p013984 Quercus lobata HOM05D004614 ORTHO05D005339 9.7e-48 194.9 455 36.5
Ciclev10001231m.g Citrus clementina HOM05D004614 ORTHO05D005339 1.7e-47 194.1 442 36.7
Gorai.009G188200 Gossypium raimondii HOM05D004614 ORTHO05D005339 6.3e-47 192.2 395 38.0
VMungo1309G2703 Vigna mungo HOM05D004614 ORTHO05D005339 8.2e-47 191.8 450 35.6
COL.COLO4_04001 Corchorus olitorius HOM05D004614 ORTHO05D005339 1.1e-46 191.4 394 37.6
Lj1g0005022 Lotus japonicus HOM05D004614 ORTHO05D005339 1.1e-46 191.4 451 34.6
MD15G1002600 Malus domestica HOM05D004614 ORTHO05D005339 1.4e-46 191.0 437 35.0
Thecc.08G058000 Theobroma cacao HOM05D004614 ORTHO05D005339 1.8e-46 190.7 394 37.3
Duzib093G0152 Durio zibethinus HOM05D004614 ORTHO05D005339 2.4e-46 190.3 444 35.8
Cfa014064 Carpinus fangiana HOM05D004614 ORTHO05D005339 3.1e-46 189.9 382 37.4
Manes.05G134900 Manihot esculenta HOM05D004614 ORTHO05D005339 3.1e-46 189.9 384 38.0
Cc10_g00730 Coffea canephora HOM05D004614 ORTHO05D005339 4.1e-46 189.5 452 36.9
CsaV3_6G031620 Cucumis sativus L. HOM05D004614 ORTHO05D005339 5.3e-46 189.1 390 37.2
Gohir.A05G179800 Gossypium hirsutum HOM05D004614 ORTHO05D005339 5.3e-46 189.1 395 37.7
TAR625G0334 Trochodendron aralioides HOM05D004614 ORTHO05D005339 9.1e-46 188.3 322 39.4
CANSAT25G1550 Cannabis sativa HOM05D004614 ORTHO05D005339 1.5e-45 187.6 433 36.3
Oeu056211.1 Olea europaea HOM05D004614 ORTHO05D005339 2.0e-45 187.2 458 34.7
CSS0048285 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 2.6e-45 186.8 451 35.9
Phvul.009G010200 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 2.6e-45 186.8 455 35.4
Rhsim07G0254700 Rhododendron simsii HOM05D004614 ORTHO05D005339 3.4e-45 186.4 420 36.9
THA.LOC104813167 Tarenaya hassleriana HOM05D004614 ORTHO05D005339 3.4e-45 186.4 378 37.3
TAR376G0430 Trochodendron aralioides HOM05D004614 ORTHO05D005339 3.4e-45 186.4 452 34.5
Nn6g31744 Nelumbo nucifera HOM05D004614 ORTHO05D005339 4.5e-45 186.0 449 35.0
Sopen12g031480 Solanum pennellii HOM05D004614 ORTHO05D005339 5.9e-45 185.7 449 33.9
Ca_15438_v3 Cicer arietinum L. HOM05D004614 ORTHO05D005339 7.7e-45 185.3 453 34.7
unitig_82.g27116 Utricularia gibba HOM05D004614 ORTHO05D005339 7.7e-45 185.3 365 36.7
CAN.G311.111 Capsicum annuum HOM05D004614 ORTHO05D005339 1.0e-44 184.9 445 34.6
MELO3C026543.2 Cucumis melo HOM05D004614 ORTHO05D005339 1.3e-44 184.5 403 38.0
Peaxi162Scf00893g00434 Petunia axillaris HOM05D004614 ORTHO05D005339 1.3e-44 184.5 425 35.5
TPR.G38127 Trifolium pratense HOM05D004614 ORTHO05D005339 3.8e-44 183.0 389 36.2
vmacro04401 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 5.0e-44 182.6 405 36.5
Aa31LG8G13830 Aethionema arabicum HOM05D004614 ORTHO05D005339 6.5e-44 182.2 362 36.7
Medtr3g115210 Medicago truncatula HOM05D004614 ORTHO05D005339 6.5e-44 182.2 455 34.5
Prupe.1G354900 Prunus persica HOM05D004614 ORTHO05D005339 6.5e-44 182.2 442 35.1
Actinidia37970 Actinidia chinensis HOM05D004614 ORTHO05D005339 8.5e-44 181.8 394 36.3
PGSC0003DMG400009975 Solanum tuberosum HOM05D004614 ORTHO05D005339 8.5e-44 181.8 331 37.2
Psat5g011520 Pisum sativum HOM05D004614 ORTHO05D005339 1.1e-43 181.4 427 35.1
BcaB04g17805 Brassica carinata HOM05D004614 ORTHO05D005339 1.4e-43 181.0 305 39.7
Rhsim06G0008000 Rhododendron simsii HOM05D004614 ORTHO05D005339 1.4e-43 181.0 367 36.5
Sp1g32010 Schrenkiella parvula HOM05D004614 ORTHO05D005339 3.2e-43 179.9 374 36.6
Sed0024410 Sechium edule HOM05D004614 ORTHO05D005339 3.2e-43 179.9 389 36.0
TWI36G0356 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 3.2e-43 179.9 392 35.5
TWI56G0787 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 3.2e-43 179.9 397 34.8
A08p07800 Brassica napus HOM05D004614 ORTHO05D005339 4.2e-43 179.5 305 39.7
BraA08t32800Z Brassica rapa HOM05D004614 ORTHO05D005339 4.2e-43 179.5 305 39.7
Solyc04g082290.4 Solanum lycopersicum HOM05D004614 ORTHO05D005339 4.2e-43 179.5 449 34.5
CiPaw.07G139400 Carya illinoinensis HOM05D004614 ORTHO05D005339 5.5e-43 179.1 436 35.8
Eucgr.F03550 Eucalyptus grandis HOM05D004614 ORTHO05D005339 5.5e-43 179.1 405 35.8
Carub.0001s3422 Capsella rubella HOM05D004614 ORTHO05D005339 7.2e-43 178.7 368 36.7
Cpa.g.sc26.206 Carica papaya HOM05D004614 ORTHO05D005339 7.2e-43 178.7 428 35.3
DCAR_016768 Daucus carota HOM05D004614 ORTHO05D005339 9.4e-43 178.3 376 36.2
GSVIVG01008677001 Vitis vinifera HOM05D004614 ORTHO05D005339 9.4e-43 178.3 305 39.3
AL1G51310 Arabidopsis lyrata HOM05D004614 ORTHO05D005339 1.2e-42 177.9 366 36.6
ECA232G3530 Erigeron canadensis HOM05D004614 ORTHO05D005339 1.2e-42 177.9 305 40.7
Lj4A805T24 Lonicera japonica HOM05D004614 ORTHO05D005339 1.2e-42 177.9 321 37.4
AT1G42430 Arabidopsis thaliana HOM05D004614 ORTHO05D005339 1.6e-42 177.6 366 36.3
HanXRQChr14g0428261 Helianthus annuus HOM05D004614 ORTHO05D005339 1.6e-42 177.6 368 37.2
BcaC07g37479 Brassica carinata HOM05D004614 ORTHO05D005339 2.1e-42 177.2 305 39.3
C08p09450 Brassica napus HOM05D004614 ORTHO05D005339 2.1e-42 177.2 305 39.3
BolC8t47801H Brassica oleracea HOM05D004614 ORTHO05D005339 2.1e-42 177.2 305 39.3
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.7e-42 176.8 396 34.6
Sopen04g035910 Solanum pennellii HOM05D004614 ORTHO05D005339 3.6e-42 176.4 449 34.3
Atru.chr13.150 Acer truncatum HOM05D004614 ORTHO05D005339 4.7e-42 176.0 218 50.9
Nitab4.5_0010763g0030 Nicotiana tabacum HOM05D004614 ORTHO05D005339 6.1e-42 175.6 367 34.9
PGSC0003DMG400029318 Solanum tuberosum HOM05D004614 ORTHO05D005339 6.1e-42 175.6 415 35.4
TAR381G0464 Trochodendron aralioides HOM05D004614 ORTHO05D005339 1.0e-41 174.9 215 53.0
Thhalv10004272m.g Eutrema salsugineum HOM05D004614 ORTHO05D005339 1.8e-41 174.1 372 37.1
Lalb_Chr11g0061661 Lupinus albus HOM05D004614 ORTHO05D005339 2.3e-41 173.7 305 39.0
Haze_22759 Corylus avellana HOM05D004614 ORTHO05D005339 3.9e-41 172.9 163 58.9
Gohir.D05G182900 Gossypium hirsutum HOM05D004614 ORTHO05D005339 3.9e-41 172.9 157 61.1
MD08G1002900 Malus domestica HOM05D004614 ORTHO05D005339 5.1e-41 172.6 395 35.4
ATR0661G410 Amborella trichopoda HOM05D004614 ORTHO05D005339 6.7e-41 172.2 304 37.2
Dinv31932 Davidia involucrata HOM05D004614 ORTHO05D005339 6.7e-41 172.2 165 60.0
Peaxi162Scf00064g01132 Petunia axillaris HOM05D004614 ORTHO05D005339 8.8e-41 171.8 329 35.6
Migut.C00954 Erythranthe guttata HOM05D004614 ORTHO05D005339 1.5e-40 171.0 351 37.0
Aqoxy6G01739 Aquilegia oxysepala HOM05D004614 ORTHO05D005339 2.0e-40 170.6 324 37.3
Potri.005G249700 Populus trichocarpa HOM05D004614 ORTHO05D005339 2.0e-40 170.6 419 34.6
Lsat_1_v5_gn_2_6461 Lactuca sativa HOM05D004614 ORTHO05D005339 2.6e-40 170.2 425 35.8
ClCG08G009540 Citrullus lanatus HOM05D004614 ORTHO05D005339 3.3e-40 169.9 115 73.0
SGA_v2.0_scaffold275G46591 Striga asiatica HOM05D004614 ORTHO05D005339 7.4e-40 168.7 433 34.9
unitig_748.g7709 Utricularia gibba HOM05D004614 ORTHO05D005339 9.7e-40 168.3 301 37.2
FAN15G3067 Fragaria x ananassa HOM05D004614 ORTHO05D005339 1.3e-39 167.9 217 50.2
Lj4C12G4 Lonicera japonica HOM05D004614 ORTHO05D005339 1.3e-39 167.9 155 60.6
FvH4_2g37530 Fragaria vesca HOM05D004614 ORTHO05D005339 2.2e-39 167.2 217 48.4
Nitab4.5_0000699g0050 Nicotiana tabacum HOM05D004614 ORTHO05D005339 2.8e-39 166.8 300 37.0
Os03g0133300 Oryza sativa ssp. japonica HOM05D004614 ORTHO05D005339 6.3e-39 165.6 304 38.5
Sabra05G0193200 Salix brachista HOM05D004614 ORTHO05D005339 1.1e-38 164.9 445 33.3
HPP92_020707 Vanilla planifolia HOM05D004614 ORTHO05D005339 1.1e-38 164.9 387 34.4
FAN20G3039 Fragaria x ananassa HOM05D004614 ORTHO05D005339 1.4e-38 164.5 217 50.2
RcHm_v2.0_Chr6g0304201 Rosa chinensis HOM05D004614 ORTHO05D005339 1.4e-38 164.5 407 35.6
CiPaw.08G072400 Carya illinoinensis HOM05D004614 ORTHO05D005339 1.8e-38 164.1 373 35.7
FAN27G1062 Fragaria x ananassa HOM05D004614 ORTHO05D005339 3.1e-38 163.3 188 52.1
CDE02G2145 Ceratophyllum demersum HOM05D004614 ORTHO05D005339 4.1e-38 162.9 152 57.9
Gorai.002G118400 Gossypium raimondii HOM05D004614 ORTHO05D005339 5.3e-38 162.5 379 34.6
HanXRQChr05g0146811 Helianthus annuus HOM05D004614 ORTHO05D005339 5.3e-38 162.5 375 33.1
Lsat_1_v5_gn_9_45021 Lactuca sativa HOM05D004614 ORTHO05D005339 5.3e-38 162.5 305 38.7
Potri.002G011300 Populus trichocarpa HOM05D004614 ORTHO05D005339 5.3e-38 162.5 438 34.2
Solyc12g094580.3 Solanum lycopersicum HOM05D004614 ORTHO05D005339 7.0e-38 162.2 214 46.7
CARHR292370 Cardamine hirsuta HOM05D004614 ORTHO05D005339 9.1e-38 161.8 86 84.9
Gohir.D01G093000 Gossypium hirsutum HOM05D004614 ORTHO05D005339 1.5e-37 161.0 379 34.6
Gohir.A01G106500 Gossypium hirsutum HOM05D004614 ORTHO05D005339 3.5e-37 159.8 378 35.2
Manes.18G005900 Manihot esculenta HOM05D004614 ORTHO05D005339 4.5e-37 159.5 86 82.6
Sc15g0004500 Simmondsia chinensis HOM05D004614 ORTHO05D005339 7.7e-37 158.7 302 37.4
Nitab4.5_0000588g0160 Nicotiana tabacum HOM05D004614 ORTHO05D005339 2.2e-36 157.1 139 59.7
SEGI_03937 Sequoiadendron giganteum HOM05D004614 ORTHO05D005339 6.5e-36 155.6 305 36.1
Zm00001eb002680 Zea mays HOM05D004614 ORTHO05D005339 1.5e-35 154.5 86 80.2
HanXRQChr15g0492731 Helianthus annuus HOM05D004614 ORTHO05D005339 7.2e-35 152.1 86 81.4
Actinidia29786 Actinidia chinensis HOM05D004614 ORTHO05D005339 4.7e-34 149.4 394 33.0
Mapoly0189s0007 Marchantia polymorpha HOM05D004614 ORTHO05D005339 4.7e-34 149.4 303 35.6
Zm00001eb402600 Zea mays HOM05D004614 ORTHO05D005339 6.1e-34 149.1 104 68.3
PGR031G0851 Punica granatum HOM05D004614 ORTHO05D005339 6.7e-33 145.6 286 36.7
Pp3c7_400 Physcomitrium patens HOM05D004614 ORTHO05D005339 1.5e-32 144.4 293 35.8
PSO541G0908 Papaver somniferum HOM05D004614 ORTHO05D005339 6.3e-31 139.0 326 31.6
PSO675G0524 Papaver somniferum HOM05D004614 ORTHO05D005339 1.4e-30 137.9 448 28.6
Pp3c11_25930 Physcomitrium patens HOM05D004614 ORTHO05D005339 2.4e-30 137.1 287 35.2
SMO169G0316 Selaginella moellendorffii HOM05D004614 ORTHO05D005339 2.0e-29 134.0 308 33.8
CDE05G2290 Ceratophyllum demersum HOM05D004614 ORTHO05D005339 7.7e-29 132.1 94 70.2
SMO202G0022 Selaginella moellendorffii HOM05D004614 ORTHO05D005339 2.3e-25 120.6 99 59.6
Nn5g30931 Nelumbo nucifera HOM05D004614 ORTHO05D005339 1.0e-20 105.1 456 28.7
Peaxi162Scf00447g00052 Petunia axillaris HOM05D004614 ORTHO05D005339 6.8e-17 92.4 104 49.0
EL10Ac1g01976 Beta vulgaris HOM05D004614 ORTHO05D005339 8.6e-12 75.5 49 83.7
CARHR292380 Cardamine hirsuta HOM05D004614 ORTHO05D005339 5.6e-11 72.8 32 96.9
Solyc12g094570.1 Solanum lycopersicum HOM05D004614 ORTHO05D005339 7.2e-11 72.4 48 66.7
Lj4A12T78 Lonicera japonica HOM05D004614 ORTHO05D005339 2.1e-10 70.9 32 93.8
Dinv25909 Davidia involucrata HOM05D004614 ORTHO05D005339 6.1e-10 69.3 49 63.3
ClCG08G009480 Citrullus lanatus HOM05D004614 ORTHO05D005339 2.3e-09 67.4 47 63.8
MD11G1103700 Malus domestica HOM05D004614 ORTHO05D005339 8.9e-09 65.5 31 87.1
Phvul.L001638 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 2.6e-08 63.9 32 87.5
PGSC0003DMG400033656 Solanum tuberosum HOM05D004614 ORTHO05D005339 5.7e-08 62.8 50 62.0
AagrBONN_evm.TU.Sc2ySwM_117.32 Anthoceros agrestis HOM05D006445 ORTHO05D008030 7.0e-06 55.8 72 38.9
Pp3c25_530 Physcomitrium patens HOM05D006445 ORTHO05D008030 9.2e-06 55.5 89 34.8


User provided reference genes

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