Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05083 Selenicereus undatus HOM05D005712 ORTHO05D007865 7.3e-195 683.7 349 100.0
Ah.00g001120 Amaranthus hybridus HOM05D005712 ORTHO05D007865 8.3e-122 441.0 350 69.1
AUR62024105 Chenopodium quinoa HOM05D005712 ORTHO05D007865 1.1e-121 440.7 303 75.2
EL10Ac1g01884 Beta vulgaris HOM05D005712 ORTHO05D007865 7.8e-120 434.5 381 64.3
AUR62035160 Chenopodium quinoa HOM05D005712 ORTHO05D007865 9.2e-113 411.0 351 64.7
CSS0017080 Camellia sinensis var. sinensis HOM05D005712 ORTHO05D007865 1.4e-105 387.1 348 60.9
Dinv31977 Davidia involucrata HOM05D005712 ORTHO05D007865 1.2e-104 384.0 331 62.5
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.3e-103 380.6 304 66.1
QL02p015343 Quercus lobata HOM05D005712 ORTHO05D007865 3.3e-102 375.9 323 63.8
Ciclev10001686m.g Citrus clementina HOM05D005712 ORTHO05D007865 4.3e-102 375.6 345 58.6
Actinidia15518 Actinidia chinensis HOM05D005712 ORTHO05D007865 3.6e-101 372.5 323 60.7
Actinidia17068 Actinidia chinensis HOM05D005712 ORTHO05D007865 6.2e-101 371.7 342 58.5
CiPaw.07G134700 Carya illinoinensis HOM05D005712 ORTHO05D007865 6.2e-101 371.7 333 59.2
Manes.05G126100 Manihot esculenta HOM05D005712 ORTHO05D007865 1.1e-100 370.9 324 62.3
Sabra05G0197900 Salix brachista HOM05D005712 ORTHO05D007865 1.4e-100 370.5 286 66.1
Thecc.08G064200 Theobroma cacao HOM05D005712 ORTHO05D007865 1.5e-99 367.1 316 60.8
Potri.002G006300 Populus trichocarpa HOM05D005712 ORTHO05D007865 4.4e-99 365.5 284 67.3
TAR381G1666 Trochodendron aralioides HOM05D005712 ORTHO05D007865 7.5e-99 364.8 325 59.1
Atru.chr13.78 Acer truncatum HOM05D005712 ORTHO05D007865 9.9e-99 364.4 266 68.4
Cpa.g.sc26.149 Carica papaya HOM05D005712 ORTHO05D007865 7.1e-97 358.2 337 57.9
Duzib116G0237 Durio zibethinus HOM05D005712 ORTHO05D007865 7.1e-97 358.2 295 62.7
TAR625G0170 Trochodendron aralioides HOM05D005712 ORTHO05D007865 7.1e-97 358.2 333 57.1
Gohir.D05G181100 Gossypium hirsutum HOM05D005712 ORTHO05D007865 9.2e-97 357.8 316 58.9
Gorai.009G186100 Gossypium raimondii HOM05D005712 ORTHO05D007865 9.2e-97 357.8 316 58.9
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 9.2e-97 357.8 328 58.2
COL.COLO4_07687 Corchorus olitorius HOM05D005712 ORTHO05D007865 1.6e-96 357.1 303 61.4
Cfa014126 Carpinus fangiana HOM05D005712 ORTHO05D007865 2.1e-96 356.7 334 57.2
Gohir.A05G177700 Gossypium hirsutum HOM05D005712 ORTHO05D007865 2.1e-96 356.7 316 58.5
Potri.005G255300 Populus trichocarpa HOM05D005712 ORTHO05D007865 2.7e-96 356.3 313 60.4
Sed0012463 Sechium edule HOM05D005712 ORTHO05D007865 2.7e-96 356.3 322 59.6
Nn5g31025 Nelumbo nucifera HOM05D005712 ORTHO05D007865 7.8e-96 354.8 325 59.4
GSVIVG01013413001 Vitis vinifera HOM05D005712 ORTHO05D007865 1.7e-95 353.6 307 60.6
vmacro21777 Vaccinium macrocarpon HOM05D005712 ORTHO05D007865 2.3e-95 353.2 364 54.1
Nitab4.5_0004637g0020 Nicotiana tabacum HOM05D005712 ORTHO05D007865 5.1e-95 352.1 307 59.9
CsaV3_4G037540 Cucumis sativus L. HOM05D005712 ORTHO05D007865 1.2e-93 347.4 330 57.9
Nitab4.5_0000486g0150 Nicotiana tabacum HOM05D005712 ORTHO05D007865 2.1e-93 346.7 337 57.0
Hma1.2p1_0699F.1_g205630 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 3.6e-93 345.9 356 55.1
TWI12G0719 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 3.1e-92 342.8 351 54.4
MELO3C017048.2 Cucumis melo HOM05D005712 ORTHO05D007865 4.0e-92 342.4 317 58.7
PGSC0003DMG400000968 Solanum tuberosum HOM05D005712 ORTHO05D007865 4.0e-92 342.4 294 61.2
Cc10_g00320 Coffea canephora HOM05D005712 ORTHO05D007865 5.2e-92 342.0 259 66.8
CAN.G36.16 Capsicum annuum HOM05D005712 ORTHO05D007865 2.0e-91 340.1 239 68.6
ECA238G0561 Erigeron canadensis HOM05D005712 ORTHO05D007865 2.0e-91 340.1 337 54.9
TWI56G0384 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 4.4e-91 339.0 322 55.6
Sopen08g012540 Solanum pennellii HOM05D005712 ORTHO05D007865 5.8e-91 338.6 289 60.6
Lj4C5T14 Lonicera japonica HOM05D005712 ORTHO05D007865 9.9e-91 337.8 284 62.7
Solyc08g042080.3 Solanum lycopersicum HOM05D005712 ORTHO05D007865 1.3e-90 337.4 289 60.9
MBI05_g08201_MAGBIO Magnolia biondii HOM05D005712 ORTHO05D007865 2.9e-90 336.3 351 55.3
MSTRG.22087 Avicennia marina HOM05D005712 ORTHO05D007865 6.4e-90 335.1 309 58.3
Haze_22847 Corylus avellana HOM05D005712 ORTHO05D007865 6.4e-90 335.1 378 51.1
ClCG11G018940 Citrullus lanatus HOM05D005712 ORTHO05D007865 3.2e-89 332.8 363 52.3
Lsat_1_v5_gn_2_2221 Lactuca sativa HOM05D005712 ORTHO05D007865 9.2e-89 331.3 299 59.5
Oeu004544.1 Olea europaea HOM05D005712 ORTHO05D007865 9.2e-89 331.3 216 75.9
Aqoxy6G01560 Aquilegia oxysepala HOM05D005712 ORTHO05D007865 4.6e-88 328.9 325 54.5
HanXRQChr06g0185301 Helianthus annuus HOM05D005712 ORTHO05D007865 6.0e-88 328.6 285 61.4
Glyma.06G015100 Glycine max HOM05D005712 ORTHO05D007865 1.0e-87 327.8 230 68.7
Aa31LG7G4990 Aethionema arabicum HOM05D005712 ORTHO05D007865 1.7e-87 327.0 294 60.9
Migut.N02981 Erythranthe guttata HOM05D005712 ORTHO05D007865 6.6e-87 325.1 328 54.6
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 8.6e-87 324.7 297 58.9
CDE04G2669 Ceratophyllum demersum HOM05D005712 ORTHO05D007865 3.3e-86 322.8 306 56.9
MD06G1005200 Malus domestica HOM05D005712 ORTHO05D007865 4.3e-86 322.4 319 55.8
arahy.Tifrunner.gnm1.ann1.CTTM8W Arachis hypogaea HOM05D005712 ORTHO05D007865 7.3e-86 321.6 243 67.5
Lj1g0001697 Lotus japonicus HOM05D005712 ORTHO05D007865 7.3e-86 321.6 247 66.4
CARHR021260 Cardamine hirsuta HOM05D005712 ORTHO05D007865 2.1e-85 320.1 300 59.0
Eucgr.F03584 Eucalyptus grandis HOM05D005712 ORTHO05D007865 4.7e-85 318.9 320 55.9
Glyma.04G015100 Glycine max HOM05D005712 ORTHO05D007865 4.7e-85 318.9 231 68.8
BcaB03g12849 Brassica carinata HOM05D005712 ORTHO05D007865 8.1e-85 318.2 317 55.2
Peaxi162Scf00632g00416 Petunia axillaris HOM05D005712 ORTHO05D007865 8.1e-85 318.2 273 60.8
Phvul.009G007500 Phaseolus vulgaris HOM05D005712 ORTHO05D007865 8.1e-85 318.2 235 66.8
VMungo1309G2122 Vigna mungo HOM05D005712 ORTHO05D007865 1.1e-84 317.8 221 71.5
SalBow6G6969 Salvia bowleyana HOM05D005712 ORTHO05D007865 2.4e-84 316.6 340 52.6
RcHm_v2.0_Chr7g0216471 Rosa chinensis HOM05D005712 ORTHO05D007865 4.0e-84 315.8 338 52.4
Ca_15390_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 6.9e-84 315.1 250 62.8
SGA_v2.0_scaffold54G19632 Striga asiatica HOM05D005712 ORTHO05D007865 6.9e-84 315.1 305 57.4
CANSAT35G0891 Cannabis sativa HOM05D005712 ORTHO05D007865 1.2e-83 314.3 323 56.7
THA.LOC104813742 Tarenaya hassleriana HOM05D005712 ORTHO05D007865 1.2e-83 314.3 290 59.7
Lalb_Chr23g0265571 Lupinus albus HOM05D005712 ORTHO05D007865 1.5e-83 313.9 234 67.9
BraA06t24791Z Brassica rapa HOM05D005712 ORTHO05D007865 2.0e-83 313.5 355 50.7
FAN18G0352 Fragaria x ananassa HOM05D005712 ORTHO05D007865 2.6e-83 313.2 299 57.2
BcaC05g25986 Brassica carinata HOM05D005712 ORTHO05D007865 3.4e-83 312.8 356 50.8
A06p16820 Brassica napus HOM05D005712 ORTHO05D007865 3.4e-83 312.8 243 65.0
C05p19380 Brassica napus HOM05D005712 ORTHO05D007865 3.4e-83 312.8 356 50.8
Thhalv10007995m.g Eutrema salsugineum HOM05D005712 ORTHO05D007865 3.4e-83 312.8 246 65.9
Carub.0001s2029 Capsella rubella HOM05D005712 ORTHO05D007865 5.8e-83 312.0 316 54.7
FAN13G2028 Fragaria x ananassa HOM05D005712 ORTHO05D007865 9.9e-83 311.2 299 57.2
AT1G20830 Arabidopsis thaliana HOM05D005712 ORTHO05D007865 1.3e-82 310.8 290 59.0
Sp1g18530 Schrenkiella parvula HOM05D005712 ORTHO05D007865 1.7e-82 310.5 246 65.4
Medtr3g116050 Medicago truncatula HOM05D005712 ORTHO05D007865 2.2e-82 310.1 261 60.5
PSO541G4707 Papaver somniferum HOM05D005712 ORTHO05D007865 2.2e-82 310.1 306 55.2
PSO675G3648 Papaver somniferum HOM05D005712 ORTHO05D007865 2.2e-82 310.1 300 55.0
BcaB07g32078 Brassica carinata HOM05D005712 ORTHO05D007865 2.9e-82 309.7 353 49.3
BolC5t30641H Brassica oleracea HOM05D005712 ORTHO05D007865 8.4e-82 308.1 357 50.7
Prupe.5G006400 Prunus persica HOM05D005712 ORTHO05D007865 5.4e-81 305.4 260 61.2
Ca_29628_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 2.1e-80 303.5 206 70.9
FAN08G0897 Fragaria x ananassa HOM05D005712 ORTHO05D007865 3.5e-80 302.8 294 57.1
FAN04G3045 Fragaria x ananassa HOM05D005712 ORTHO05D007865 6.0e-80 302.0 309 55.7
RcHm_v2.0_Chr4g0410601 Rosa chinensis HOM05D005712 ORTHO05D007865 6.0e-80 302.0 257 61.1
AL1G33850 Arabidopsis lyrata HOM05D005712 ORTHO05D007865 3.9e-79 299.3 233 65.2
Hma1.2p1_0699F.1_g205640 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 1.1e-78 297.7 187 77.0
FvH4_5g25940 Fragaria vesca HOM05D005712 ORTHO05D007865 5.6e-78 295.4 245 61.6
TPR.G38133 Trifolium pratense HOM05D005712 ORTHO05D007865 2.8e-77 293.1 252 60.3
ATR0807G100 Amborella trichopoda HOM05D005712 ORTHO05D007865 1.4e-76 290.8 305 54.8
arahy.Tifrunner.gnm1.ann1.16JRKN Arachis hypogaea HOM05D005712 ORTHO05D007865 7.6e-75 285.0 193 71.5
unitig_22.g5745 Utricularia gibba HOM05D005712 ORTHO05D007865 9.9e-75 284.6 196 73.5
Psat5g008680 Pisum sativum HOM05D005712 ORTHO05D007865 2.8e-69 266.5 186 69.4
HPP92_022548 Vanilla planifolia HOM05D005712 ORTHO05D007865 4.0e-68 262.7 273 52.7
SEGI_27803 Sequoiadendron giganteum HOM05D005712 ORTHO05D007865 1.4e-65 254.2 243 53.9
Zm00001eb428100 Zea mays HOM05D005712 ORTHO05D007865 7.4e-62 241.9 237 52.3
Zm00001eb072780 Zea mays HOM05D005712 ORTHO05D007865 1.3e-61 241.1 237 53.2
Os04g0584900 Oryza sativa ssp. japonica HOM05D005712 ORTHO05D007865 8.2e-61 238.4 261 48.3
Cpa.g.sc26.148 Carica papaya HOM05D005712 ORTHO05D007865 2.4e-60 236.9 153 77.8
Mapoly0022s0159 Marchantia polymorpha HOM05D005712 ORTHO05D007865 7.4e-54 215.3 310 42.3
SMO276G0054 Selaginella moellendorffii HOM05D005712 ORTHO05D007865 3.1e-52 209.9 252 48.8
AagrBONN_evm.TU.Sc2ySwM_117.1031 Anthoceros agrestis HOM05D005712 ORTHO05D007865 2.6e-51 206.8 173 58.4
Pp3c9_6030 Physcomitrium patens HOM05D005712 ORTHO05D007865 1.9e-49 200.7 205 54.1
Oeu019899.1 Olea europaea HOM05D005712 ORTHO05D007865 2.5e-49 200.3 121 78.5
Pp3c15_5620 Physcomitrium patens HOM05D005712 ORTHO05D007865 7.2e-49 198.7 210 50.0
Duzib093G1432 Durio zibethinus HOM05D005712 ORTHO05D007865 3.3e-46 189.9 103 86.4
Cpa.g.c30366.3 Carica papaya HOM05D005712 ORTHO05D007865 8.2e-29 132.1 79 77.2
Cpa.g.c44851 Carica papaya HOM05D005712 ORTHO05D007865 2.4e-28 130.6 69 87.0
Oeu019902.1 Olea europaea HOM05D005712 ORTHO05D007865 1.3e-18 98.2 181 40.3
A07p15460 Brassica napus HOM05D005712 ORTHO05D007865 5.7e-14 82.8 61 63.9
BolC8t49668H Brassica oleracea HOM05D005712 ORTHO05D032168 3.3e-09 67.0 133 33.8
BcaB03g14422 Brassica carinata HOM05D005712 ORTHO05D014368 2.3e-07 60.8 43 65.1
EL10Ac7g16970 Beta vulgaris HOM05D000810 ORTHO05D014916 2.0e-06 57.8 84 42.9
EL10Ac5g10765 Beta vulgaris HOM05D001787 ORTHO05D088741 2.6e-06 57.4 90 38.9
BcaC07g39055 Brassica carinata HOM05D005712 ORTHO05D032168 5.7e-06 56.2 150 30.0
C08p20390 Brassica napus HOM05D005712 ORTHO05D032168 9.8e-06 55.5 132 34.8


User provided reference genes

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