Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 0.0e+00 2459.1 1261 100.0
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1461.4 1333 62.7
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1322.4 1293 57.3
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 0.0e+00 1272.7 1321 57.7
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 0.0e+00 1257.7 1337 57.2
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 0.0e+00 1195.6 1273 55.7
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1169.5 1279 53.0
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1113.2 1289 51.4
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1109.7 1128 55.0
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1102.0 1142 53.6
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1100.9 1312 49.8
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1099.7 1314 50.2
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1097.8 1289 50.1
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1087.8 1280 51.0
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1087.4 1111 53.8
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1079.7 1300 49.2
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 3.2e-309 1065.4 1301 49.2
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 7.2e-309 1064.3 1285 48.9
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 3.6e-308 1062.0 1300 47.8
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 2.3e-307 1059.3 1317 48.3
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 5.2e-307 1058.1 1311 48.9
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 5.2e-307 1058.1 1288 47.7
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 8.8e-307 1057.4 1147 52.6
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 2.0e-306 1056.2 1278 49.7
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 2.2e-305 1052.7 1468 44.5
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 4.8e-305 1051.6 956 57.8
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 2.0e-303 1046.2 1289 48.7
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 1.3e-302 1043.5 1181 50.7
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 1.5e-301 1040.0 1125 52.4
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 3.6e-300 1035.4 1291 48.3
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 3.6e-300 1035.4 1104 52.8
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 6.1e-300 1034.6 1278 47.4
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 5.7e-298 1028.1 1292 48.0
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 2.4e-296 1022.7 1310 47.6
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 5.4e-296 1021.5 1301 47.3
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 7.0e-296 1021.1 1282 48.1
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 9.1e-296 1020.8 1280 47.9
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 9.1e-296 1020.8 1296 47.8
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 8.6e-294 1014.2 1145 50.0
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.5e-293 1013.4 1282 47.2
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 9.5e-293 1010.7 1320 46.7
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 4.0e-291 1005.4 1171 49.0
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.9e-291 1004.2 1297 47.0
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.2e-290 1003.8 1288 46.7
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 1.1e-288 997.3 1153 50.6
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 2.7e-287 992.6 1322 45.3
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 2.3e-286 989.6 1250 47.1
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 9.5e-285 984.2 1190 48.6
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 5.2e-283 978.4 1221 48.2
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 5.2e-283 978.4 1327 45.5
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 7.5e-282 974.5 1283 46.1
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.3e-281 973.8 1324 46.4
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 1.3e-281 973.8 1373 45.1
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.4e-280 970.3 1150 49.7
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 3.2e-280 969.1 1271 46.1
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 1.6e-279 966.8 1147 48.6
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 4.6e-279 965.3 1229 47.5
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 4.6e-279 965.3 1374 43.9
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 7.8e-279 964.5 1303 46.2
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 1.7e-278 963.4 1272 45.2
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 3.0e-278 962.6 1269 45.9
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 3.0e-278 962.6 1270 45.3
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 1.9e-277 959.9 1268 46.1
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 1.9e-277 959.9 1227 47.0
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 5.6e-277 958.4 1272 45.3
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 9.5e-277 957.6 1311 44.2
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 2.1e-276 956.4 1273 45.2
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 2.1e-276 956.4 1273 45.2
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 2.1e-276 956.4 1273 45.2
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 3.6e-276 955.7 1327 44.1
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 3.6e-276 955.7 1327 44.8
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 1.8e-275 953.4 1271 44.8
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 6.8e-275 951.4 1268 46.3
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 3.4e-274 949.1 1271 45.6
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.4e-274 949.1 1337 45.0
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 1.1e-272 944.1 1192 47.7
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 4.1e-272 942.2 954 53.7
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 5.4e-272 941.8 1277 45.1
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 3.5e-271 939.1 1028 52.6
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 6.0e-271 938.3 1176 46.7
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 1.7e-270 936.8 1270 45.2
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 3.9e-270 935.6 1202 47.2
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 3.3e-269 932.6 1300 45.0
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 5.6e-269 931.8 1366 44.4
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 2.3e-267 926.4 1107 49.2
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 9.2e-264 914.4 1328 43.7
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 2.5e-261 906.4 992 51.9
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 2.2e-257 893.3 1333 42.1
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 6.4e-257 891.7 1293 44.2
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 6.0e-255 885.2 946 51.9
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 2.3e-238 830.1 1327 40.8
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 1.2e-234 817.8 1175 43.3
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 6.0e-231 805.4 1154 45.0
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.0e-230 804.7 1313 40.1
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 6.7e-230 802.0 1315 39.0
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 3.3e-229 799.7 1189 42.9
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 2.4e-227 793.5 1156 43.3
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 9.7e-213 745.0 1202 39.4
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.2e-201 707.2 550 64.9
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 5.5e-200 702.6 971 43.4
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 1.4e-198 698.0 1238 39.3
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 3.0e-198 696.8 1148 39.5
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 3.3e-197 693.3 513 67.6
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 1.7e-185 654.4 925 42.7
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 6.6e-177 625.9 521 59.7
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 2.7e-170 604.0 973 38.1
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 8.1e-151 539.3 1244 32.0
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 1.2e-143 515.4 1391 29.8
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 9.3e-139 499.2 571 47.8
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.5e-107 394.8 980 30.2
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 8.2e-87 326.6 734 34.7
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.2e-79 300.1 241 62.2
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 2.3e-57 228.8 309 45.3
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 1.9e-51 209.1 236 48.7
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 2.3e-49 202.2 174 57.5
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 6.0e-45 187.6 176 54.0
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 1.7e-44 186.0 135 70.4
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.7e-39 169.5 653 26.8
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 2.4e-30 139.0 105 62.9
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 6.0e-29 134.4 234 36.8
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.9e-28 131.7 118 55.9
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 2.8e-26 125.6 108 59.3
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 2.8e-26 125.6 84 67.9
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 7.6e-24 117.5 121 49.6
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.6e-19 101.3 120 47.5
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 7.3e-19 100.9 121 48.8
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 2.8e-18 99.0 133 41.4
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.6e-18 98.6 125 46.4
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 6.4e-15 87.8 127 38.6
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 7.9e-13 80.9 429 28.0
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 1.5e-11 76.6 143 34.3
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 5.6e-11 74.7 64 54.7
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 7.4e-11 74.3 90 46.7
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 6.9e-09 67.8 123 42.3
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.0e-08 66.2 87 40.2
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.3e-07 63.5 64 53.1


User provided reference genes

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