Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 1.1e-276 956.1 481 100.0
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 1.4e-180 636.7 526 63.7
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.1e-177 627.1 546 60.8
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.2e-155 553.9 521 58.0
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 2.8e-152 542.7 517 55.9
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.9e-149 532.7 521 55.9
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 7.1e-132 474.9 530 49.8
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.3e-130 470.7 499 53.1
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 5.1e-130 468.8 532 49.8
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 2.6e-126 456.4 528 49.2
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 3.9e-122 442.6 530 46.6
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 5.7e-121 438.7 530 47.4
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 2.2e-120 436.8 531 46.1
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 2.4e-119 433.3 528 45.6
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 6.9e-119 431.8 550 45.8
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.5e-118 430.6 530 47.7
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 5.0e-117 425.6 559 44.0
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 1.4e-116 424.1 552 46.4
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 2.5e-116 423.3 531 46.7
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 2.1e-115 420.2 526 45.6
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 2.1e-115 420.2 535 44.5
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 3.6e-115 419.5 511 45.4
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 7.9e-115 418.3 522 46.4
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 2.3e-114 416.8 530 45.8
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 8.8e-114 414.8 528 45.6
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 8.8e-114 414.8 528 45.6
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 1.1e-113 414.5 531 45.6
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 4.3e-113 412.5 528 44.5
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 4.3e-113 412.5 531 45.4
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.7e-112 410.6 543 43.8
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 1.8e-111 407.1 535 45.4
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 3.4e-110 402.9 532 44.0
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 1.3e-109 401.0 532 44.0
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 2.2e-109 400.2 534 44.4
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 3.8e-109 399.4 530 44.3
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.0e-109 399.1 544 43.0
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 5.0e-109 399.1 526 44.3
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 1.4e-108 397.5 523 43.6
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 1.4e-108 397.5 483 46.6
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 1.9e-108 397.1 526 45.8
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 1.9e-108 397.1 538 42.9
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 2.5e-108 396.7 526 45.6
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 2.5e-108 396.7 528 43.9
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 3.2e-108 396.4 527 43.8
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.5e-108 395.6 542 43.2
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 5.5e-108 395.6 532 43.4
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.1e-107 393.7 542 42.8
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.7e-107 393.3 542 43.2
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.7e-107 393.3 455 49.5
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.3e-106 390.2 545 42.4
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 2.3e-106 390.2 528 43.4
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 3.0e-106 389.8 536 43.1
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 3.9e-106 389.4 530 43.0
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 6.7e-106 388.7 542 43.0
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 6.7e-106 388.7 545 42.4
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 1.5e-105 387.5 523 42.8
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 2.6e-105 386.7 537 44.1
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 3.3e-105 386.3 532 41.9
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 8.2e-104 381.7 559 40.8
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 8.2e-104 381.7 534 41.9
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 1.8e-103 380.6 538 41.8
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 7.0e-103 378.6 528 42.2
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 9.1e-103 378.3 526 42.4
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 1.2e-102 377.9 555 41.3
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 2.6e-102 376.7 532 41.0
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 3.5e-102 376.3 528 42.2
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 7.7e-102 375.2 534 42.1
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 1.3e-101 374.4 530 41.5
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 1.3e-101 374.4 524 40.6
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 3.8e-101 372.9 530 40.9
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 6.5e-101 372.1 533 40.3
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 1.1e-100 371.3 531 41.8
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.5e-100 370.9 525 43.4
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 1.5e-100 370.9 499 43.9
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 1.2e-99 367.9 532 41.0
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 1.6e-99 367.5 528 41.7
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 4.7e-99 365.9 516 42.6
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 4.4e-97 359.4 528 41.3
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 5.7e-97 359.0 530 42.6
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 1.7e-96 357.5 530 42.1
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 6.3e-96 355.5 530 41.1
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.4e-95 354.4 538 40.7
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 1.8e-95 354.0 535 41.1
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.4e-95 353.6 534 40.4
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 3.1e-95 353.2 533 39.6
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 2.0e-94 350.5 534 41.4
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 2.0e-94 350.5 534 41.4
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 2.0e-94 350.5 534 41.4
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 3.5e-94 349.7 439 46.0
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.5e-94 349.7 536 39.6
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 1.7e-93 347.4 528 41.3
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 8.5e-93 345.1 436 47.5
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 8.5e-93 345.1 538 38.8
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.5e-92 344.4 534 39.7
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 3.6e-91 339.7 539 40.6
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 1.8e-90 337.4 534 40.8
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 1.8e-90 337.4 534 40.8
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 4.0e-90 336.3 534 38.2
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 5.2e-90 335.9 524 40.3
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.1e-87 328.2 607 35.7
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 5.4e-87 325.9 540 37.6
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 4.5e-86 322.8 523 39.4
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 7.7e-86 322.0 534 39.0
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.2e-85 320.5 537 40.0
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 8.0e-83 312.0 529 39.1
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 4.1e-79 299.7 488 40.4
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 4.5e-78 296.2 543 35.9
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 1.3e-77 294.7 555 33.5
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 1.1e-76 291.6 555 33.9
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 1.1e-76 291.6 529 36.9
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 4.0e-74 283.1 560 34.3
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 5.2e-74 282.7 528 36.9
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 8.9e-74 282.0 432 41.4
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 1.2e-73 281.6 386 42.5
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 3.4e-73 280.0 415 40.2
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 1.1e-71 275.0 677 31.3
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 4.1e-71 273.1 385 41.0
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 8.3e-64 248.8 345 42.6
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 7.3e-60 235.7 335 40.9
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 9.5e-60 235.3 483 34.2
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 1.3e-53 214.9 172 63.4
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 5.8e-49 199.5 283 41.7
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.5e-44 184.9 445 32.1
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 4.3e-44 183.3 390 35.1
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 1.9e-39 167.9 280 37.9
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 9.3e-39 165.6 131 62.6
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 4.3e-36 156.8 294 37.4
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.3e-35 155.2 162 51.9
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 1.1e-34 152.1 155 48.4
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 2.4e-34 151.0 155 49.0
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 6.9e-34 149.4 268 36.2
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.0e-33 147.9 339 31.6
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 2.9e-32 144.1 150 48.0
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 1.9e-31 141.4 308 31.8
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 5.4e-31 139.8 151 48.3
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 4.6e-30 136.7 168 45.8
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 5.6e-28 129.8 244 36.9
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 2.1e-27 127.9 264 37.1
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 3.6e-27 127.1 185 39.5
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 1.4e-26 125.2 142 46.5
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 3.1e-26 124.0 524 23.3
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 2.9e-24 117.5 192 39.1
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 3.9e-21 107.1 138 45.7
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 9.6e-12 75.9 190 27.4
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 2.4e-10 71.2 184 25.0
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 1.3e-08 65.5 165 27.9
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 2.5e-07 61.2 89 40.4
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 5.5e-07 60.1 96 33.3


User provided reference genes

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