Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 3.8e-88 328.2 169 100.0
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 3.3e-84 315.1 168 94.0
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.2e-83 312.4 169 92.9
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 2.2e-83 312.4 169 92.3
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 4.8e-83 311.2 169 92.9
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 4.5e-81 304.7 195 82.6
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.0e-80 303.5 195 82.6
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 1.3e-80 303.1 195 82.6
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 1.3e-80 303.1 195 82.6
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 2.2e-80 302.4 195 81.5
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 2.9e-80 302.0 195 82.1
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 2.9e-80 302.0 195 82.6
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 3.8e-80 301.6 195 82.1
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 3.8e-80 301.6 195 81.5
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 3.8e-80 301.6 195 82.1
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 5.0e-80 301.2 195 81.5
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 6.5e-80 300.8 195 81.5
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 6.5e-80 300.8 195 82.1
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 8.5e-80 300.4 195 81.5
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 8.5e-80 300.4 195 81.0
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 8.5e-80 300.4 195 81.5
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 1.1e-79 300.1 195 80.5
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 1.1e-79 300.1 195 81.0
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 1.1e-79 300.1 195 82.1
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 1.4e-79 299.7 195 81.0
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 1.4e-79 299.7 195 80.5
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 1.4e-79 299.7 195 81.0
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 1.9e-79 299.3 195 80.5
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 1.9e-79 299.3 195 81.0
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 2.5e-79 298.9 195 81.0
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.2e-79 298.5 195 80.5
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 3.2e-79 298.5 195 80.5
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 4.2e-79 298.1 195 80.5
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 4.2e-79 298.1 195 80.5
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 4.2e-79 298.1 160 93.1
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 4.2e-79 298.1 160 93.1
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 4.2e-79 298.1 195 80.5
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 5.5e-79 297.7 195 80.5
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 5.5e-79 297.7 195 81.0
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 5.5e-79 297.7 195 81.0
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 7.2e-79 297.4 195 80.5
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 9.4e-79 297.0 195 80.0
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 1.2e-78 296.6 195 80.5
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 1.2e-78 296.6 195 80.5
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 2.1e-78 295.8 195 80.0
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.1e-78 295.8 195 80.0
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.7e-78 295.4 160 92.5
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 2.7e-78 295.4 195 80.0
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 2.7e-78 295.4 195 80.0
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 3.6e-78 295.0 195 79.5
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 6.1e-78 294.3 195 79.0
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 6.1e-78 294.3 193 79.8
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.1e-78 294.3 195 79.5
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 6.1e-78 294.3 195 79.0
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 6.1e-78 294.3 195 79.0
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 7.9e-78 293.9 193 79.8
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 7.9e-78 293.9 193 79.8
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 7.9e-78 293.9 193 79.8
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 7.9e-78 293.9 195 79.0
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 1.0e-77 293.5 195 79.0
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 1.0e-77 293.5 195 79.5
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 1.0e-77 293.5 195 79.5
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.0e-77 293.5 195 80.0
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 1.4e-77 293.1 193 79.3
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 1.4e-77 293.1 195 79.5
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 1.8e-77 292.7 193 79.3
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 1.8e-77 292.7 193 79.3
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 1.8e-77 292.7 193 79.3
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 1.8e-77 292.7 195 77.9
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 2.3e-77 292.4 195 77.4
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 2.3e-77 292.4 193 79.8
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 2.3e-77 292.4 199 79.4
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 3.0e-77 292.0 195 79.0
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 3.0e-77 292.0 195 79.5
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 3.0e-77 292.0 195 79.0
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 5.1e-77 291.2 195 77.9
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 6.7e-77 290.8 187 82.4
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 6.7e-77 290.8 195 79.0
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 6.7e-77 290.8 195 79.0
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.1e-76 290.0 195 77.9
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.1e-76 290.0 195 77.9
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 1.1e-76 290.0 193 79.3
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 1.5e-76 289.7 195 76.9
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 2.5e-76 288.9 185 82.2
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 4.3e-76 288.1 186 81.7
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 4.3e-76 288.1 195 77.4
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 5.7e-76 287.7 195 76.4
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 7.4e-76 287.3 196 78.1
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 9.7e-76 287.0 189 79.4
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 9.7e-76 287.0 193 77.7
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 1.3e-75 286.6 185 81.6
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 1.3e-75 286.6 185 81.6
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 2.2e-75 285.8 186 81.2
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.2e-75 285.8 195 76.9
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.7e-75 285.0 189 79.4
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 3.7e-75 285.0 188 79.3
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 6.3e-75 284.3 189 79.4
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 8.2e-75 283.9 187 79.1
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.1e-74 283.5 185 79.5
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 1.4e-74 283.1 185 80.5
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 2.4e-74 282.3 187 79.1
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 4.1e-74 281.6 186 79.0
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 5.3e-74 281.2 195 74.9
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 1.2e-73 280.0 185 78.9
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 1.2e-73 280.0 185 78.9
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 1.2e-73 280.0 185 78.9
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 1.2e-73 280.0 186 79.0
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 1.2e-73 280.0 186 78.5
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 3.4e-73 278.5 185 78.9
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 3.4e-73 278.5 185 78.9
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 1.3e-72 276.6 195 76.9
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 6.5e-72 274.2 186 76.3
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 6.5e-72 274.2 216 69.0
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 1.1e-71 273.5 218 69.3
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 4.2e-71 271.6 195 72.8
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 1.4e-69 266.5 195 71.8
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 3.0e-69 265.4 195 73.3
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 6.7e-69 264.2 226 65.5
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 7.4e-68 260.8 195 72.3
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 1.8e-66 256.1 195 67.7
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 4.5e-65 251.5 194 65.5
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 4.5e-65 251.5 172 77.3
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 7.7e-65 250.8 195 70.8
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 2.6e-60 235.7 187 66.8
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 7.0e-58 227.6 120 94.2
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 7.7e-57 224.2 166 72.3
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 1.2e-54 216.9 150 78.7
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 2.1e-46 189.5 134 74.6
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 4.7e-46 188.3 181 55.2
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 2.4e-42 176.0 142 65.5
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 3.1e-42 175.6 93 94.6
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.5e-39 166.0 95 89.5
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.2e-39 165.2 180 53.9
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 4.2e-39 165.2 124 71.8
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.4e-37 160.2 86 93.0
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 4.5e-33 145.2 180 52.2
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 7.8e-33 144.4 79 92.4
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 1.3e-32 143.7 188 43.6
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 1.0e-29 134.0 173 44.5
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.0e-28 129.8 70 92.9
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.4e-28 128.6 70 91.4
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 2.8e-22 109.4 57 93.0
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 8.0e-22 107.8 86 69.8
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 5.2e-21 105.1 58 86.2
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 7.5e-20 101.3 54 90.7
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 8.3e-19 97.8 49 95.9
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 8.3e-19 97.8 49 95.9
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 1.6e-17 93.6 90 61.1
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 3.0e-16 89.4 66 69.7
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.1e-15 87.4 47 87.2
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 5.2e-13 78.6 70 64.3
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 1.2e-12 77.4 41 92.7
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.6e-12 76.3 50 74.0
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 1.3e-11 73.9 39 92.3
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 3.2e-10 69.3 43 76.7
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 3.2e-10 69.3 43 76.7


User provided reference genes

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