Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04507 Selenicereus undatus HOM05D006421 ORTHO05D008268 4.0e-289 998.0 793 100.0
AUR62031532 Chenopodium quinoa HOM05D006421 ORTHO05D008268 3.2e-129 466.8 787 49.7
EL10Ac2g04201 Beta vulgaris HOM05D006421 ORTHO05D008268 9.7e-118 428.7 773 55.8
TWI34G1016 Tripterygium wilfordii HOM05D006421 ORTHO05D008268 2.6e-107 394.0 788 56.9
AUR62012410 Chenopodium quinoa HOM05D006421 ORTHO05D008268 8.8e-103 379.0 761 53.6
Eucgr.C01728 Eucalyptus grandis HOM05D006421 ORTHO05D008268 2.0e-102 377.9 753 53.1
Gohir.A07G028900 Gossypium hirsutum HOM05D006421 ORTHO05D008268 3.5e-99 367.1 788 55.7
Actinidia15670 Actinidia chinensis HOM05D006421 ORTHO05D008268 2.9e-98 364.0 746 48.8
CiPaw.07G224100 Carya illinoinensis HOM05D006421 ORTHO05D008268 3.0e-95 354.0 787 58.1
Gohir.D07G032900 Gossypium hirsutum HOM05D006421 ORTHO05D008268 5.2e-95 353.2 788 54.6
Gorai.001G034500 Gossypium raimondii HOM05D006421 ORTHO05D008268 9.7e-94 349.0 788 49.7
Manes.16G122900 Manihot esculenta HOM05D006421 ORTHO05D008268 2.5e-89 334.3 797 53.8
Duzib168G2139 Durio zibethinus HOM05D006421 ORTHO05D008268 2.1e-88 331.3 788 56.2
Haze_21503 Corylus avellana HOM05D006421 ORTHO05D008268 2.7e-88 330.9 790 51.6
FAN27G1287 Fragaria x ananassa HOM05D006421 ORTHO05D008268 1.0e-87 328.9 761 49.9
RcHm_v2.0_Chr6g0297771 Rosa chinensis HOM05D006421 ORTHO05D008268 9.8e-86 322.4 788 57.9
FAN15G0163 Fragaria x ananassa HOM05D006421 ORTHO05D008268 4.8e-85 320.1 761 49.9
FAN20G2434 Fragaria x ananassa HOM05D006421 ORTHO05D008268 6.3e-85 319.7 761 45.9
FAN24G1512 Fragaria x ananassa HOM05D006421 ORTHO05D008268 6.3e-85 319.7 792 51.0
Potri.006G255800 Populus trichocarpa HOM05D006421 ORTHO05D008268 1.3e-82 312.0 786 55.2
Hma1.2p1_0243F.1_g100900 Hydrangea macrophylla HOM05D006421 ORTHO05D008268 2.5e-81 307.8 767 54.2
GSVIVG01035871001 Vitis vinifera HOM05D006421 ORTHO05D008268 2.7e-80 304.3 779 53.1
Cfa013134 Carpinus fangiana HOM05D006421 ORTHO05D008268 6.1e-80 303.1 789 55.9
FvH4_2g28941 Fragaria vesca HOM05D006421 ORTHO05D008268 1.8e-79 301.6 790 51.3
Duzib187G1366 Durio zibethinus HOM05D006421 ORTHO05D008268 5.2e-79 300.1 790 50.1
Nitab4.5_0002408g0020 Nicotiana tabacum HOM05D006421 ORTHO05D008268 8.8e-79 299.3 767 59.2
Lj8P705T28 Lonicera japonica HOM05D006421 ORTHO05D008268 2.2e-77 294.7 741 50.5
AT4G32190 Arabidopsis thaliana HOM05D006421 ORTHO05D008268 8.3e-77 292.7 741 50.9
Thhalv10024464m.g Eutrema salsugineum HOM05D006421 ORTHO05D008268 4.1e-76 290.4 752 54.7
Dinv08633 Davidia involucrata HOM05D006421 ORTHO05D008268 7.0e-76 289.7 739 53.0
arahy.Tifrunner.gnm1.ann1.1F1BFK Arachis hypogaea HOM05D006421 ORTHO05D008268 9.2e-76 289.3 796 53.5
Psat6g029040 Pisum sativum HOM05D006421 ORTHO05D008268 2.3e-74 284.6 742 55.1
DCAR_001538 Daucus carota HOM05D006421 ORTHO05D008268 3.3e-73 280.8 786 45.8
MD15G1126300 Malus domestica HOM05D006421 ORTHO05D008268 1.8e-71 275.0 753 50.9
Sabra06G0200100 Salix brachista HOM05D006421 ORTHO05D008268 7.5e-70 269.6 787 52.6
Oeu053117.1 Olea europaea HOM05D006421 ORTHO05D008268 1.1e-68 265.8 500 46.6
Prupe.1G482200 Prunus persica HOM05D006421 ORTHO05D008268 1.8e-68 265.0 788 44.3
Nitab4.5_0002042g0070 Nicotiana tabacum HOM05D006421 ORTHO05D008268 2.4e-68 264.6 768 56.4
Sopen08g011590 Solanum pennellii HOM05D006421 ORTHO05D008268 4.1e-68 263.8 738 41.5
arahy.Tifrunner.gnm1.ann1.658XMK Arachis hypogaea HOM05D006421 ORTHO05D008268 1.6e-67 261.9 799 52.2
Nn8g39522 Nelumbo nucifera HOM05D006421 ORTHO05D008268 1.0e-66 259.2 751 55.5
QL02p021457 Quercus lobata HOM05D006421 ORTHO05D008268 2.3e-66 258.1 789 52.9
MELO3C003706.2 Cucumis melo HOM05D006421 ORTHO05D008268 6.6e-66 256.5 753 53.4
THA.LOC104818618 Tarenaya hassleriana HOM05D006421 ORTHO05D008268 8.6e-66 256.1 788 49.5
Solyc08g022030.3 Solanum lycopersicum HOM05D006421 ORTHO05D008268 2.5e-65 254.6 738 40.7
SalBow4G3177 Salvia bowleyana HOM05D006421 ORTHO05D008268 4.3e-65 253.8 740 53.4
CAN.G117.5 Capsicum annuum HOM05D006421 ORTHO05D008268 9.5e-65 252.7 739 44.1
AL7G19640 Arabidopsis lyrata HOM05D006421 ORTHO05D008268 2.1e-64 251.5 740 47.6
Migut.A00033 Erythranthe guttata HOM05D006421 ORTHO05D008268 1.4e-63 248.8 509 45.4
Medtr1g012620 Medicago truncatula HOM05D006421 ORTHO05D008268 1.4e-63 248.8 741 51.3
Carub.0007s0836 Capsella rubella HOM05D006421 ORTHO05D008268 1.8e-63 248.4 741 52.1
Cc08_g00500 Coffea canephora HOM05D006421 ORTHO05D008268 1.2e-62 245.7 773 47.6
Ciclev10007642m.g Citrus clementina HOM05D006421 ORTHO05D008268 2.6e-62 244.6 690 53.9
TPR.G15679 Trifolium pratense HOM05D006421 ORTHO05D008268 1.4e-60 238.8 739 52.6
Sp7g29980 Schrenkiella parvula HOM05D006421 ORTHO05D008268 1.0e-58 232.6 765 50.8
C01p06780 Brassica napus HOM05D006421 ORTHO05D008268 2.3e-58 231.5 508 44.9
BolC1t00672H Brassica oleracea HOM05D006421 ORTHO05D008268 2.3e-58 231.5 508 44.9
PGSC0003DMG400004306 Solanum tuberosum HOM05D006421 ORTHO05D008268 3.9e-58 230.7 786 42.9
A01p06150 Brassica napus HOM05D006421 ORTHO05D008268 1.1e-57 229.2 485 44.7
Thecc.09G023300 Theobroma cacao HOM05D006421 ORTHO05D008268 8.1e-56 223.0 502 45.0
Rhsim07G0159500 Rhododendron simsii HOM05D006421 ORTHO05D008268 3.1e-55 221.1 501 45.5
TAR625G1222 Trochodendron aralioides HOM05D006421 ORTHO05D008268 5.2e-55 220.3 795 48.9
BcaNung03144 Brassica carinata HOM05D006421 ORTHO05D008268 6.8e-55 219.9 738 49.7
CARHR240120 Cardamine hirsuta HOM05D006421 ORTHO05D008268 2.6e-54 218.0 792 47.5
Sc09g0008160 Simmondsia chinensis HOM05D006421 ORTHO05D008268 2.6e-54 218.0 504 49.2
BcaC09g52004 Brassica carinata HOM05D006421 ORTHO05D008268 3.4e-54 217.6 494 44.9
Phvul.001G050600 Phaseolus vulgaris HOM05D006421 ORTHO05D008268 2.9e-53 214.5 792 50.6
SGA_v2.0_scaffold20G09108 Striga asiatica HOM05D002695 ORTHO05D002964 7.1e-52 209.9 741 44.8
PSO170G2190 Papaver somniferum HOM05D006421 ORTHO05D008268 2.5e-49 201.4 513 41.7
Cpa.g.sc217.10 Carica papaya HOM05D006421 ORTHO05D008268 5.6e-49 200.3 788 49.5
Oeu033132.1 Olea europaea HOM05D006421 ORTHO05D008268 2.8e-48 198.0 749 48.6
ECA246G1400 Erigeron canadensis HOM05D002695 ORTHO05D002964 4.7e-48 197.2 738 47.6
Actinidia14601 Actinidia chinensis HOM05D006421 ORTHO05D008268 1.1e-47 196.1 377 52.3
COL.COLO4_18870 Corchorus olitorius HOM05D006421 ORTHO05D008268 1.8e-47 195.3 788 45.8
Lalb_Chr24g0402151 Lupinus albus HOM05D006421 ORTHO05D008268 5.2e-47 193.7 731 45.4
C02p24100 Brassica napus HOM05D006421 ORTHO05D008268 8.9e-47 193.0 469 44.8
vmacro05173 Vaccinium macrocarpon HOM05D006421 ORTHO05D008268 3.4e-46 191.0 735 42.2
CSS0048874 Camellia sinensis var. sinensis HOM05D006421 ORTHO05D008268 2.2e-45 188.3 739 48.0
BcaC03g14918 Brassica carinata HOM05D006421 ORTHO05D008268 4.9e-45 187.2 438 45.7
Sed0003255 Sechium edule HOM05D006421 ORTHO05D008268 4.9e-45 187.2 756 49.6
Lj5g0021919 Lotus japonicus HOM05D006421 ORTHO05D008268 6.4e-45 186.8 741 46.0
VMungo0647G1945 Vigna mungo HOM05D006421 ORTHO05D008268 1.2e-43 182.6 744 48.1
Peaxi162Scf01131g00117 Petunia axillaris HOM05D006421 ORTHO05D008268 3.5e-43 181.0 738 49.6
MSTRG.11610 Avicennia marina HOM05D006421 ORTHO05D008268 1.0e-42 179.5 790 41.6
TAR636G3563 Trochodendron aralioides HOM05D006421 ORTHO05D008268 1.3e-42 179.1 496 40.5
Atru.chr7.2443 Acer truncatum HOM05D006421 ORTHO05D008268 3.0e-42 177.9 713 51.6
ClCG05G016810 Citrullus lanatus HOM05D006421 ORTHO05D008268 7.3e-41 173.3 779 48.0
PGR031G1896 Punica granatum HOM05D006421 ORTHO05D008268 4.7e-40 170.6 789 44.2
CANSAT35G0532 Cannabis sativa HOM05D006421 ORTHO05D008268 1.1e-39 169.5 788 39.7
CsaV3_3G046330 Cucumis sativus L. HOM05D006421 ORTHO05D008268 4.0e-39 167.5 764 47.9
Ca_13033_v3 Cicer arietinum L. HOM05D006421 ORTHO05D008268 3.8e-37 161.0 745 42.8
CSS0036831 Camellia sinensis var. sinensis HOM05D006421 ORTHO05D008268 6.4e-37 160.2 742 47.4
PSO017G0123 Papaver somniferum HOM05D006421 ORTHO05D008268 2.1e-35 155.2 512 40.0
BraA10t43273Z Brassica rapa HOM05D006421 ORTHO05D008268 1.7e-34 152.1 163 54.0
HanXRQChr16g0510771 Helianthus annuus HOM05D006421 ORTHO05D008268 4.8e-32 144.1 729 39.6
Glyma.17G211900 Glycine max HOM05D006421 ORTHO05D008268 8.1e-32 143.3 355 58.9
unitig_748.g8080 Utricularia gibba HOM05D006421 ORTHO05D008268 3.6e-24 117.9 727 45.4
Glyma.14G115951 Glycine max HOM05D006421 ORTHO05D008268 4.0e-23 114.4 214 52.3
TAR636G0610 Trochodendron aralioides HOM05D006421 ORTHO05D008268 2.0e-22 112.1 194 41.2
Zm00001eb206500 Zea mays HOM05D006421 ORTHO05D008268 4.9e-21 107.5 743 43.9
FAN15G2294 Fragaria x ananassa HOM05D006421 ORTHO05D008268 1.5e-14 85.9 329 32.8
SEGI_00734 Sequoiadendron giganteum HOM05D006421 ORTHO05D008268 5.8e-14 84.0 802 32.2
Aa31LG2G17740 Aethionema arabicum HOM05D006421 ORTHO05D008268 1.0e-13 83.2 742 41.4
ATR0800G069 Amborella trichopoda HOM05D006421 ORTHO05D008268 6.5e-13 80.5 100 51.0
CDE07G0223 Ceratophyllum demersum HOM05D006421 ORTHO05D008268 1.1e-12 79.7 178 34.3
SEGI_28581 Sequoiadendron giganteum HOM05D006421 ORTHO05D008268 7.1e-12 77.0 522 30.7
FAN15G3016 Fragaria x ananassa HOM05D006421 ORTHO05D008268 1.2e-11 76.3 247 47.4
C02p24000 Brassica napus HOM05D006421 ORTHO05D008268 2.3e-10 72.0 318 56.0
Mapoly0009s0162 Marchantia polymorpha HOM05D006421 ORTHO05D008268 6.7e-10 70.5 518 36.7
A03p32460 Brassica napus HOM05D003015 ORTHO05D024548 1.5e-09 69.3 158 38.6
BraA07t31256Z Brassica rapa HOM05D000793 ORTHO05D024548 1.5e-09 69.3 158 38.6
Os02g0186400 Oryza sativa ssp. japonica HOM05D006421 ORTHO05D008268 1.9e-09 68.9 755 46.1
Potri.018G026300 Populus trichocarpa HOM05D006421 ORTHO05D008268 1.9e-09 68.9 442 23.3
CDE06G1662 Ceratophyllum demersum HOM05D006421 ORTHO05D008268 2.5e-09 68.6 71 50.7
FAN15G3111 Fragaria x ananassa HOM05D006421 ORTHO05D008268 7.4e-09 67.0 98 43.9
Sabra18G0028800 Salix brachista HOM05D006421 ORTHO05D008268 1.1e-07 63.2 111 43.2
Lsat_1_v5_gn_5_30240 Lactuca sativa HOM05D006421 ORTHO05D008268 6.9e-07 60.5 755 33.6
A07p36910 Brassica napus HOM05D000793 ORTHO05D024548 4.5e-06 57.8 76 51.3


User provided reference genes

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