Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1815.4 922 100.0
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1503.8 923 83.1
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1499.2 924 83.7
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1498.0 924 83.9
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1484.2 924 81.9
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1424.1 928 79.2
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1395.2 938 75.6
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1395.2 940 76.0
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1394.8 938 75.5
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1383.2 939 75.8
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1382.1 939 75.4
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1380.9 930 75.8
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1373.2 941 74.2
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1372.1 936 74.8
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1370.9 942 74.8
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1366.3 931 74.7
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1364.0 939 74.1
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1363.6 936 73.7
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1356.7 936 73.0
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1354.0 937 72.9
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1352.0 936 73.1
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1352.0 1028 68.1
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1351.7 924 74.5
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1349.7 939 73.6
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1348.2 983 71.6
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1348.2 983 71.6
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1347.0 972 72.5
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1346.3 939 72.9
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1345.9 940 72.9
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1345.1 937 73.4
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1344.7 933 73.1
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1343.6 940 73.1
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1343.6 941 73.1
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1343.2 942 73.8
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1342.8 933 72.6
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1342.4 939 72.8
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1342.0 952 71.4
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1341.6 937 72.9
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1338.2 930 72.6
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1337.4 933 72.7
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1336.6 942 72.2
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1334.3 900 75.6
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1331.6 952 71.3
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1330.9 936 71.9
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1330.5 933 72.2
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1330.1 924 73.6
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1328.9 938 72.3
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1327.8 952 71.2
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1327.8 940 72.7
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1325.5 938 72.0
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1318.5 938 70.9
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1317.0 940 71.0
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1314.7 928 73.0
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1313.5 938 70.0
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1310.4 937 71.4
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1308.1 937 71.4
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1308.1 926 71.8
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1305.8 938 71.2
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1304.7 1016 67.8
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1304.7 936 72.4
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1301.2 948 70.8
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1299.6 939 70.7
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1298.1 932 71.8
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1297.0 926 72.2
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1295.0 948 70.7
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1295.0 931 71.1
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1294.6 934 70.8
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1290.0 930 70.6
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1286.2 930 70.4
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1285.8 934 70.9
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1279.2 934 70.7
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1278.8 925 70.3
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1278.8 928 70.2
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1277.7 925 70.4
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1275.8 923 70.1
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1275.0 929 69.5
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1275.0 925 70.2
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1275.0 925 70.2
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1275.0 940 70.1
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1271.5 930 70.1
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1270.0 938 70.1
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1268.1 864 75.0
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1266.5 929 69.1
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1263.8 931 68.7
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1245.0 946 67.9
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1244.2 938 68.1
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1234.6 920 69.2
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1213.4 827 75.1
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1211.4 930 67.2
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1181.0 928 66.5
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1179.1 943 65.1
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1177.9 934 66.4
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1171.4 932 64.5
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1162.1 929 66.7
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1159.1 934 63.4
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1138.6 927 63.0
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1135.2 922 64.5
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1133.6 938 61.7
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 3.4e-308 1061.6 747 73.5
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 8.8e-280 967.2 756 67.9
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 2.4e-269 932.6 952 54.2
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 6.8e-248 861.3 966 49.2
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 7.5e-247 857.8 579 75.1
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 3.3e-226 789.3 948 47.7
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 5.2e-224 781.9 596 67.4
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 2.3e-219 766.5 919 47.6
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.5e-204 716.1 641 59.1
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.3e-190 671.0 917 43.1
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 3.0e-187 659.8 424 78.8
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 1.3e-166 591.3 1060 38.0
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.8e-160 570.9 905 40.3
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 1.5e-149 534.6 430 63.5
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.4e-146 523.5 745 42.1
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.8e-144 517.7 492 58.5
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.0e-142 511.9 865 38.7
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 2.1e-124 451.1 352 65.9
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 6.0e-111 406.4 330 67.6
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 1.9e-104 384.8 251 81.3
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 2.4e-96 357.8 361 53.2
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 2.7e-95 354.4 311 59.8
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.3e-89 335.5 303 56.8
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 1.0e-86 325.9 389 46.8
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 4.6e-63 247.3 155 78.1
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 6.7e-62 243.4 269 50.2
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 2.1e-47 195.3 117 77.8
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.1e-45 189.5 159 61.0
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 4.1e-43 181.0 209 51.2
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 6.5e-41 173.7 197 51.3
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 4.7e-31 141.0 159 51.6
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 3.0e-30 138.3 86 82.6
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.0e-29 135.6 138 53.6
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.8e-28 131.7 159 47.8
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 7.7e-18 97.1 59 76.3
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.1e-16 93.2 71 62.0
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 9.5e-16 90.1 57 75.4
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.0e-13 82.4 241 29.5
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.5e-08 66.2 56 62.5
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 1.9e-08 65.9 38 73.7
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 9.5e-08 63.5 180 27.8
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 2.8e-07 62.0 39 71.8


User provided reference genes

Program Settings