Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 4.2e-65 251.1 120 100.0
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 6.5e-58 227.3 120 88.3
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 4.2e-57 224.6 120 86.7
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 4.6e-56 221.1 120 85.8
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 4.6e-56 221.1 120 86.7
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 6.0e-56 220.7 118 85.6
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 7.9e-56 220.3 120 85.0
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 1.3e-55 219.5 120 84.2
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 1.3e-55 219.5 120 85.0
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 85.8
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 85.8
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 85.8
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 84.2
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.3e-55 218.8 120 85.8
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 5.1e-55 217.6 120 84.2
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 5.1e-55 217.6 120 84.2
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 5.1e-55 217.6 120 85.0
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 5.1e-55 217.6 120 83.3
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 6.7e-55 217.2 120 82.5
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 6.7e-55 217.2 120 85.0
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.7e-55 217.2 120 85.0
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 6.7e-55 217.2 120 84.2
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 82.5
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 82.5
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 82.5
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 5.7e-54 214.2 117 83.8
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 5.7e-54 214.2 118 82.2
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 83.3
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 1.6e-53 212.6 120 82.5
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 1.6e-53 212.6 120 83.3
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 82.5
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 2.8e-53 211.8 120 83.3
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 2.8e-53 211.8 120 83.3
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 6.3e-53 210.7 120 80.0
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 6.3e-53 210.7 118 80.5
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 6.3e-53 210.7 118 80.5
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 1.4e-52 209.5 120 81.7
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 1.4e-52 209.5 115 82.6
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 80.8
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 80.8
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 80.8
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 3.1e-52 208.4 118 81.4
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 3.1e-52 208.4 115 82.6
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.0
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 5.3e-52 207.6 118 81.4
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 6.9e-52 207.2 117 82.1
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 6.9e-52 207.2 118 78.8
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 79.2
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 1.5e-51 206.1 120 79.2
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 83.3
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 79.2
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 2.6e-51 205.3 120 77.5
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 2.6e-51 205.3 118 78.0
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 2.6e-51 205.3 120 79.2
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 77.5
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 78.3
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 77.5
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 77.5
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 78.3
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 76.7
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 80.0
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 78.3
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 4.5e-51 204.5 119 78.2
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 5.9e-51 204.1 120 78.3
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 5.9e-51 204.1 120 78.3
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 5.9e-51 204.1 117 82.1
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 7.7e-51 203.8 117 80.3
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 7.7e-51 203.8 120 79.2
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 1.0e-50 203.4 118 78.8
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 1.3e-50 203.0 120 77.5
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 1.3e-50 203.0 118 79.7
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.3e-50 203.0 120 77.5
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 1.3e-50 203.0 144 70.8
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 77.5
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 79.2
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 2.2e-50 202.2 118 78.0
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 2.2e-50 202.2 120 77.5
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 2.2e-50 202.2 120 75.8
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 2.9e-50 201.8 120 79.2
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 76.7
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 76.7
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 76.7
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 76.7
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 76.7
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 77.5
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 76.7
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 5.0e-50 201.1 120 76.7
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 5.0e-50 201.1 120 76.7
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 5.0e-50 201.1 120 76.7
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 5.0e-50 201.1 120 76.7
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 5.0e-50 201.1 120 76.7
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 5.0e-50 201.1 120 76.7
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 75.8
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 76.7
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 76.7
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 77.5
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 76.7
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 76.7
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 1.1e-49 199.9 118 77.1
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 1.9e-49 199.1 118 77.1
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 2.5e-49 198.7 120 75.0
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 3.2e-49 198.4 120 75.8
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 4.2e-49 198.0 111 82.9
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 4.2e-49 198.0 111 83.8
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 9.4e-49 196.8 118 75.4
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 1.2e-48 196.4 120 76.7
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 1.2e-48 196.4 120 74.2
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 1.6e-48 196.1 120 76.7
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 1.6e-48 196.1 117 76.9
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 1.6e-48 196.1 120 75.8
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 1.6e-48 196.1 120 75.0
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 2.1e-48 195.7 120 75.0
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 2.1e-48 195.7 120 75.0
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 2.7e-48 195.3 110 81.8
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 1.0e-47 193.4 110 83.6
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 2.3e-47 192.2 120 73.3
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 3.0e-47 191.8 120 74.2
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 3.3e-46 188.3 110 78.2
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.1e-44 183.3 110 77.3
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 1.4e-44 183.0 111 75.7
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 1.8e-44 182.6 112 76.8
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 7.7e-43 177.2 110 78.2
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 1.1e-41 173.3 213 46.5
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 1.9e-41 172.6 107 79.4
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 1.2e-40 169.9 120 65.8
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 6.1e-40 167.5 95 82.1
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 7.9e-40 167.2 95 82.1
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 1.8e-39 166.0 131 62.6
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 3.9e-39 164.9 94 83.0
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 2.0e-38 162.5 91 82.4
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 2.0e-38 162.5 120 63.3
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.4e-38 161.4 93 82.8
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 5.7e-38 161.0 93 80.6
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 5.7e-38 161.0 91 83.5
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 2.8e-37 158.7 122 66.4
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.7e-37 158.3 91 82.4
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.8e-36 156.0 91 82.4
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 1.8e-36 156.0 169 50.9
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 3.1e-36 155.2 110 69.1
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 3.1e-36 155.2 110 69.1
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 4.1e-36 154.8 85 83.5
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 5.3e-36 154.5 91 80.2
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 2.6e-35 152.1 110 68.2
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 1.3e-34 149.8 133 54.9
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 1.7e-34 149.4 136 61.0
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 1.7e-34 149.4 120 63.3
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 2.2e-34 149.1 120 59.2
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 4.2e-33 144.8 91 73.6
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 5.5e-33 144.4 90 75.6
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 1.2e-32 143.3 91 73.6
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 1.6e-32 142.9 91 72.5
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 8.8e-31 137.1 86 70.9
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.3e-30 135.2 77 84.4
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 7.4e-30 134.0 95 64.2
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 6.3e-29 131.0 93 65.6
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 7.7e-27 124.0 62 90.3
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 1.7e-26 122.9 62 90.3
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 2.2e-26 122.5 95 64.2
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 9.4e-25 117.1 62 83.9
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 9.4e-25 117.1 119 44.5
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.7e-24 114.8 120 53.3
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 1.4e-23 113.2 62 82.3
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 5.2e-23 111.3 110 45.5
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 3.3e-22 108.6 89 62.9
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 7.7e-19 97.4 84 61.9
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.0e-18 97.1 62 75.8
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 5.0e-18 94.7 62 74.2
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 8.5e-18 94.0 115 41.7
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 1.5e-17 93.2 57 73.7
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.8e-15 86.3 57 73.7
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 6.6e-10 67.8 44 70.5
Thecc.10G088100 Theobroma cacao HOM05D004197 ORTHO05D004975 4.0e-07 58.5 35 74.3


User provided reference genes

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